Ggra9490.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ggra9490.t1
Unique Name	Ggra9490.t1
Type	polypeptide
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	313

Homology

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BLAST of Ggra9490.t1 vs. uniprot
Match: A0A2V3J5S8 (Chromatin assembly factor 1 subunit FSM n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5S8_9FLOR)

HSP 1 Score: 299 bits (765), Expect = 6.180e-89
Identity = 187/287 (65.16%), Postives = 220/287 (76.66%), Query Frame = 0

Query:   28 VTGRRPFRKDSELDYDHDSXAEWEEEE-GEDIQDVEDDKELASEEAELRKLYGSDXXXXXXXXXXXXXXXXXXXXXXGDDGSGQNGDTEKKDKKGEI-IDLTKNTQKDSQKARDIARLKRRKALMGSVLVEGVSFTGASKLDAYPVSTFTNSKPIQMFNPFVFSASDIVAEHLKTKVPSTRAARASNIDEQAKLDLAVALVNDGSNRDRIVLQFCESRRTRGLNVPAKSEVVRAISEMASREKRDGDTRAVWHLNDAKLERMVQQMGIQRRPIGTAGPITTPLSMMK 312
            V+GRRPF+KD+ ++YDHDS         GEDI DVE +KELASEEAEL+KLYGSD    XX  XXXXXXXXXXX   G+DG G        +KK  I +DLT+  Q + +K RD  ++KR+K+   +V++EG+S +G SKLDAYPV+ F NSKPI MFNPFVFSASDI AEHLK+KVP TRA + SNIDE+AKLDLAVALVNDGSNRDRIV QFCESRRTRGL VPAKSEVVRAIS+MA+REKRDGD+RAVW+LNDA LERMVQQMG   +   ++ PI   LS  K
Sbjct: 1053 VSGRRPFKKDNSINYDHDSEXXXXXXXXGEDILDVEAEKELASEEAELKKLYGSDDEDDXXFLXXXXXXXXXXX---GEDGEGNQSQGTDGEKKAAIEMDLTQGQQNEVKKPRDGMKVKRKKSAFCTVVIEGISLSGPSKLDAYPVTAFANSKPIPMFNPFVFSASDIAAEHLKSKVPPTRAVKLSNIDEKAKLDLAVALVNDGSNRDRIVYQFCESRRTRGLIVPAKSEVVRAISQMATREKRDGDSRAVWYLNDAHLERMVQQMGHIGQATDSSRPIAATLSSGK 1336

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BLAST of Ggra9490.t1 vs. uniprot
Match: R7Q4K3 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q4K3_CHOCR)

HSP 1 Score: 145 bits (365), Expect = 3.230e-35
Identity = 124/299 (41.47%), Postives = 159/299 (53.18%), Query Frame = 0

Query:   31 RRPFRKDSELDYDHDSXAEWEEEEG-EDIQDVEDDKELASEEAELRKLYGSDXXXXXXXXXXXXXXXXXXXXXX----------GDDGSG-------------QNGDTEKKDKKGEIIDLT----------KNTQKDSQKARDIARLKRRKALMGSVLVEGVSFTGA---SKLDAYPVSTFTNSKPIQMFNPFVFSASDIVAEHLKTKVPSTRAARASNIDEQAKLDLAVALVNDGS--NRDRIVLQFCESRRTRGLNVPAKSEVVRAISEMASREKRDGDTRAVWHLNDAKLERMVQQ 290
            RRP  K+ +LDY +DS  EWEEEE  ED+ D+E DKE A E+AELRKLYGSD           XXXXXXXXXXX          G DG               Q G     D   E++ LT           N  KD+       + +R +    S++++GVS   A   S LD Y VS+   +  I+MFNP++   +D + E    K    R  R S +DE AK DLAV LV   S  +RD +V +FCE RR++GL VP K EVVRAI  +A+ EKR GD+RA WHLND  L   +++
Sbjct:  366 RRPILKEPDLDYAYDSGEEWEEEEDVEDLLDIEVDKERADEDAELRKLYGSDEEEDDDFLDDGXXXXXXXXXXXSSCDGEAAGEGHDGKKPGHEVSLPSSLVTQTGPITDGDAPTEMVGLTITTSGTGNKRVNASKDASNENLRKKRRRHRKFKSSIVIQGVSLPKAGEQSPLDCYAVSSIEGAPRIRMFNPYITHVTDFLHETSMPKPAPIRIPRTS-LDEGAKHDLAVVLVTGTSKTSRDNLVFEFCERRRSQGLPVPPKIEVVRAIRVLATNEKRSGDSRAAWHLNDQLLAARIRE 663

The following BLAST results are available for this feature:

BLAST of Ggra9490.t1 vs. uniprot

BLAST of Ggra9490.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A2V3J5S8	6.180e-89	65.16	Chromatin assembly factor 1 subunit FSM n=1 Tax=Gr...	[more]
R7Q4K3	3.230e-35	41.47	Uncharacterized protein n=1 Tax=Chondrus crispus T...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 51..71
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 83..108
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..67
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..82
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..131
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 109..131
None	No IPR available	PANTHER	PTHR15272	CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT A CAF-1 SUBUNIT A	coord: 26..188
IPR022043	Chromatin assembly factor 1 subunit A	PFAM	PF12253	CAF1A	coord: 23..71 e-value: 9.7E-12 score: 44.9

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000873_pilon	contig	tig00000873_pilon:169075..173059 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9490.t1	Ggra9490.t1	Gracilaria gracilis GNS1m male	mRNA	tig00000873_pilon 169075..173059 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ggra9490.t1 ID=Ggra9490.t1|Name=Ggra9490.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=313bp
MVGRLQRIIHALQLIRARALLQSRPRVVTGRRPFRKDSELDYDHDSDAEW
EEEEGEDIQDVEDDKELASEEAELRKLYGSDDEDDDDFLDDDEAGDDDDD
DDEGDDGSGQNGDTEKKDKKGEIIDLTKNTQKDSQKARDIARLKRRKALM
GSVLVEGVSFTGASKLDAYPVSTFTNSKPIQMFNPFVFSASDIVAEHLKT
KVPSTRAARASNIDEQAKLDLAVALVNDGSNRDRIVLQFCESRRTRGLNV
PAKSEVVRAISEMASREKRDGDTRAVWHLNDAKLERMVQQMGIQRRPIGT
AGPITTPLSMMK*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR022043	CAF1A