Ggra9490.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9490.t1
Unique NameGgra9490.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length313
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000873_piloncontigtig00000873_pilon:169075..173059 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9490Ggra9490Gracilaria gracilis GNS1m malegenetig00000873_pilon 169075..173059 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9490.t1Ggra9490.t1Gracilaria gracilis GNS1m malepolypeptidetig00000873_pilon 169075..173059 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9490.t1.start1Ggra9490.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000873_pilon 169075..169077 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9490.t1.CDS1Ggra9490.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000873_pilon 169075..169151 +
Ggra9490.t1.CDS2Ggra9490.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000873_pilon 172198..173059 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9490.t1.exon1Ggra9490.t1.exon1Gracilaria gracilis GNS1m maleexontig00000873_pilon 169075..169151 +
Ggra9490.t1.exon2Ggra9490.t1.exon2Gracilaria gracilis GNS1m maleexontig00000873_pilon 172198..173059 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9490.t1.intron1Ggra9490.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000873_pilon 169152..172197 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9490.t1.stop1Ggra9490.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000873_pilon 173057..173059 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9490.t1 ID=Ggra9490.t1|Name=Ggra9490.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=313bp
MVGRLQRIIHALQLIRARALLQSRPRVVTGRRPFRKDSELDYDHDSDAEW
EEEEGEDIQDVEDDKELASEEAELRKLYGSDDEDDDDFLDDDEAGDDDDD
DDEGDDGSGQNGDTEKKDKKGEIIDLTKNTQKDSQKARDIARLKRRKALM
GSVLVEGVSFTGASKLDAYPVSTFTNSKPIQMFNPFVFSASDIVAEHLKT
KVPSTRAARASNIDEQAKLDLAVALVNDGSNRDRIVLQFCESRRTRGLNV
PAKSEVVRAISEMASREKRDGDTRAVWHLNDAKLERMVQQMGIQRRPIGT
AGPITTPLSMMK*
back to top

spliced messenger RNA

>Ggra9490.t1 ID=Ggra9490.t1|Name=Ggra9490.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=939bp|location=Sequence derived from alignment at tig00000873_pilon:169075..173059+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCGGCCGGTTGCAGCGTATTATACATGCGCTGCAGCTCATCCGAGC
GCGCGCGCTTCTGCAAAGCCGGCCTCGAGTGGTTACGGGTCGTCGGCCAT
TCAGAAAGGATAGTGAGCTGGACTATGATCACGATAGTGACGCTGAATGG
GAGGAGGAGGAGGGCGAGGACATCCAAGATGTGGAGGATGATAAAGAGCT
CGCCAGTGAAGAAGCCGAACTAAGAAAGTTGTACGGCAGTgatgacgagg
atgatgatgactttctggacgatgatgaagctggggatgatgatgatgac
gacgacgaaggggacgatggCAGTGGGCAGAACGGGGATACAGAAAAGAA
GGACAAGAAAGGCGAGATTATAGACTTGACGAAGAATACGCAAAAGGATT
CGCAGAAAGCGCGCGATATCGCGCGATTGAAACGCAGAAAAGCGCTGATG
GGATCGGTGCTTGTCGAAGGCGTGAGCTTTACTGGGGCGAGCAAGTTGGA
CGCGTATCCGGTAAGCACGTTTACCAACTCGAAACCGATACAAATGTTCA
ACCCGTTCGTGTTCTCCGCGTCTGACATAGTTGCGGAACATCTCAAGACA
AAGGTGCCTTCTACTCGAGCGGCCAGAGCGAGCAACATCGACGAGCAGGC
CAAACTGGATCTGGCGGTGGCTCTGGTGAACGATGGCTCAAATCGGGACC
GCATCGTGTTGCAATTTTGTGAGAGTAGACGAACTAGAGGGCTGAATGTT
CCGGCAAAAAGTGAGGTGGTTCGAGCCATTTCTGAAATGGCAAGCAGGGA
GAAACGCGACGGTGACACTAGGGCGGTTTGGCATCTCAACGACGCCAAGC
TGGAGAGAATGGTGCAGCAGATGGGTATTCAAAGACGGCCGATTGGCACG
GCTGGACCGATTACCACGCCTTTGTCGATGATGAAGTAG
back to top

protein sequence of Ggra9490.t1

>Ggra9490.t1 ID=Ggra9490.t1|Name=Ggra9490.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=313bp
MVGRLQRIIHALQLIRARALLQSRPRVVTGRRPFRKDSELDYDHDSDAEW
EEEEGEDIQDVEDDKELASEEAELRKLYGSDDEDDDDFLDDDEAGDDDDD
DDEGDDGSGQNGDTEKKDKKGEIIDLTKNTQKDSQKARDIARLKRRKALM
GSVLVEGVSFTGASKLDAYPVSTFTNSKPIQMFNPFVFSASDIVAEHLKT
KVPSTRAARASNIDEQAKLDLAVALVNDGSNRDRIVLQFCESRRTRGLNV
PAKSEVVRAISEMASREKRDGDTRAVWHLNDAKLERMVQQMGIQRRPIGT
AGPITTPLSMMK*
back to top

mRNA from alignment at tig00000873_pilon:169075..173059+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9490.t1 ID=Ggra9490.t1|Name=Ggra9490.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=3985bp|location=Sequence derived from alignment at tig00000873_pilon:169075..173059+ (Gracilaria gracilis GNS1m male)
ATGGTCGGCCGGTTGCAGCGTATTATACATGCGCTGCAGCTCATCCGAGC
GCGCGCGCTTCTGCAAAGCCGGCCTCGGTCTGAGCGGCGCGGGCGGCACG
GGCGGCATGGGCGCCACAGGCGGtcgcccgccgctctgcgccacgctggg
cggcaacggctgcatgacggacgccggcttggcggacgccaccagcggcg
gcacggtgctcttctccacccattcgtggtccgtaacgtagctgcgcatg
cccgtgtccaggtccttgagcaggaagtgctcgatgcgcggcggcttgtg
cgcggtcggcggcgcgcgcggcgcgacaacgggagaagaaggcgctgaat
tggacgccatgcgttcgctgcgccggctgcgcggctgggctgcGCGGCTG
GGCTGCGCAGTTGGGACGCGCGTCGCGTGTCGCGCTCCTTGTAACTTATC
TACCTAACCAGCCCCTTAGATAACTGGGACGCCATGTAAGAACGGGCCTT
GTCTGCCGTTGTTATAGTTGTTGTTTAGCACTTGATGATTCACACGTCCT
TCTTCACCGACACGTCCACGCAGCCGCGCCGCGCCAGCGTCCACACGTGT
GTACGGGCTGCGCAGCGCTCAATTTTGGCGCCAaaaacaccgccacgaag
cgaaacaccaccacgcagcgcgcaacacccgcgggcgcgattcggcggcg
catcgaccggtcgcgcctcgtccccagTGCAGCCCCATCGTCCGTGTGcg
ccgcgccgtcgccacacacccgcgcccaccgtcgccgcccaccccgccgt
caccgcccgccccgccgtcgccgcccgccccgcccctgtcgtccgccgcc
gttgccgccgcgcccatgtcggacgccccgcgtctcgcgccggccgccgc
cgccgtgccgccgcgcacctcgtcgccgTACGcgccgccgccgccgccgc
cgccgcccgcctcgtcgccgcccgccgctggcgtggcggcgtcgccgcgt
caacccgcgccgtcgcgcgctttcgcgccgttcgccgccacttttcccat
gtacatgcccgcgcgcacgcacatgcagctgcagacggcgcctgccactg
tgcgtcgcggtctcgcgcctgttggcgcgtcggcgcggccttctgctgct
gctcgacaggacgtgccgtctttgccctcggctgtggctcggccttctgc
tgctgctcgacaggacgtgccgtctttgccttcggctgtggctcgaatgc
gcatggcgtctcagtcgtcgtcggctgttgctccacatcgcgtggcgtct
cagtcgtcccctgttgctccacagcgtgtttcatctctgccgtcggctgt
tgctccacatcgcctggcgtctcagtcgtcgcctgttgttccacagcgtg
tttcatctctgccgtcggctgttgctccacatcgcctggcgtctcattcg
tcggctgttgctccacagcccatggcatctcagcctccggctgcggctca
gcagcgcgtgtcgtctcggacgatgactgttgctcaacagcacatgtcat
ctcagccatcggttttggctcagcagcgcgtgtcgtttcagccgtcggct
gtggctcaacagcacatgtcgtctcaactattggctctggctcaacagcg
catgtcatccccgccgtcggctgttgctcaacagcgcatgtcctctctgc
cgtcgcctgtttctcaacagcaaatgtcgtctctgccgctggctgtggct
caacagcccaaatcattcccgccctcggctgtggctcaacagcgcatgtc
atctcagccgtcggcggtggctcaacagcgcgtgtcgtctcagccctcgg
cagtcgcagtacagcccgcgcagcacggcgtgcagctcgcacagaacgcc
aagcagttctgtcgcagtcgcattgtgccgcgtgcacgcgagcctacgtt
gatacattactaccaacgactgcacaacaccgttgaagaggctacgcgct
tctcgttaaatcttcgtttcccgtctgacggcatgccacccgatccgacg
cagatcgcgcgtgtcgttgctcacgagctacagggtgttctcggctctga
ggtcaactcgttggtagcaaagcatgcgtcggacaagtcatatgttcaag
ctttccgatccaatgtggctggtcactttgtcgaatacggcgtgtctgga
actcatctgtcgtacatttccgacgcgctcatggccacgcctgaaagctc
actgtcttcgacgccgcctcccaccccaccgcagctgatgcactcgcacc
ccgtcgtggaacgagtgcgcgtgcgagtgtttgaggctgagattactcat
ctgccgttggcgtttgtcgagcagctcgtcaagacccggcgcgccatgcg
tcgcttcaaatctcgcatcgagctgcacgtgcgcatcatcctcgcgctcg
aggggaagggacgtaaggtcagcgacgcgcagctggatcgcttgaaactg
caattagagaaggctgatcaacaagccgaaaacgagcgcaagcgcaggat
ggctgctgaagcagcgaagctcgagaaggaacggcgtgcaaaagaggccg
ccaaacagagtgagaggaatggactgaaggagaaggaaatgaagaagcgc
cgtcgtcaggagaatgcgcaggcctcctttatgaagcgctttgtgaaacc
caagattgaggagcgtcagcgggacgatgctcagcatgttcgctacgtgc
ctcgcgagcgttccggtcattatgcgcaagaggttgcggacgatccagat
gtcatgagcgtcgactggtggctgctatctgaactacagttcatgtccat
atcggcactggaccaactactcaaggaaggagcaagcgatctcaagtccc
atctagtggattgtgccatgcggagaaaggaagcggaaaagactatcatc
agcgttcttcaagactaccgtgttcgccgtcgcgctccttgcgatgatcg
ctacccgcgatttgcgagaaagcgcgctgaagtgcgagggcgagggaagc
agggcgtgatcaaactgctacagtttgacgagaactatcggcctgcgtac
tacgGTACATTTCGCAAGTCAAGAGTGGTTACGGGTCGTCGGCCATTCAG
AAAGGATAGTGAGCTGGACTATGATCACGATAGTGACGCTGAATGGGAGG
AGGAGGAGGGCGAGGACATCCAAGATGTGGAGGATGATAAAGAGCTCGCC
AGTGAAGAAGCCGAACTAAGAAAGTTGTACGGCAGTgatgacgaggatga
tgatgactttctggacgatgatgaagctggggatgatgatgatgacgacg
acgaaggggacgatggCAGTGGGCAGAACGGGGATACAGAAAAGAAGGAC
AAGAAAGGCGAGATTATAGACTTGACGAAGAATACGCAAAAGGATTCGCA
GAAAGCGCGCGATATCGCGCGATTGAAACGCAGAAAAGCGCTGATGGGAT
CGGTGCTTGTCGAAGGCGTGAGCTTTACTGGGGCGAGCAAGTTGGACGCG
TATCCGGTAAGCACGTTTACCAACTCGAAACCGATACAAATGTTCAACCC
GTTCGTGTTCTCCGCGTCTGACATAGTTGCGGAACATCTCAAGACAAAGG
TGCCTTCTACTCGAGCGGCCAGAGCGAGCAACATCGACGAGCAGGCCAAA
CTGGATCTGGCGGTGGCTCTGGTGAACGATGGCTCAAATCGGGACCGCAT
CGTGTTGCAATTTTGTGAGAGTAGACGAACTAGAGGGCTGAATGTTCCGG
CAAAAAGTGAGGTGGTTCGAGCCATTTCTGAAATGGCAAGCAGGGAGAAA
CGCGACGGTGACACTAGGGCGGTTTGGCATCTCAACGACGCCAAGCTGGA
GAGAATGGTGCAGCAGATGGGTATTCAAAGACGGCCGATTGGCACGGCTG
GACCGATTACCACGCCTTTGTCGATGATGAAGTAG
back to top

Coding sequence (CDS) from alignment at tig00000873_pilon:169075..173059+

>Ggra9490.t1 ID=Ggra9490.t1|Name=Ggra9490.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=939bp|location=Sequence derived from alignment at tig00000873_pilon:169075..173059+ (Gracilaria gracilis GNS1m male)
ATGGTCGGCCGGTTGCAGCGTATTATACATGCGCTGCAGCTCATCCGAGC
GCGCGCGCTTCTGCAAAGCCGGCCTCGAGTGGTTACGGGTCGTCGGCCAT
TCAGAAAGGATAGTGAGCTGGACTATGATCACGATAGTGACGCTGAATGG
GAGGAGGAGGAGGGCGAGGACATCCAAGATGTGGAGGATGATAAAGAGCT
CGCCAGTGAAGAAGCCGAACTAAGAAAGTTGTACGGCAGTgatgacgagg
atgatgatgactttctggacgatgatgaagctggggatgatgatgatgac
gacgacgaaggggacgatggCAGTGGGCAGAACGGGGATACAGAAAAGAA
GGACAAGAAAGGCGAGATTATAGACTTGACGAAGAATACGCAAAAGGATT
CGCAGAAAGCGCGCGATATCGCGCGATTGAAACGCAGAAAAGCGCTGATG
GGATCGGTGCTTGTCGAAGGCGTGAGCTTTACTGGGGCGAGCAAGTTGGA
CGCGTATCCGGTAAGCACGTTTACCAACTCGAAACCGATACAAATGTTCA
ACCCGTTCGTGTTCTCCGCGTCTGACATAGTTGCGGAACATCTCAAGACA
AAGGTGCCTTCTACTCGAGCGGCCAGAGCGAGCAACATCGACGAGCAGGC
CAAACTGGATCTGGCGGTGGCTCTGGTGAACGATGGCTCAAATCGGGACC
GCATCGTGTTGCAATTTTGTGAGAGTAGACGAACTAGAGGGCTGAATGTT
CCGGCAAAAAGTGAGGTGGTTCGAGCCATTTCTGAAATGGCAAGCAGGGA
GAAACGCGACGGTGACACTAGGGCGGTTTGGCATCTCAACGACGCCAAGC
TGGAGAGAATGGTGCAGCAGATGGGTATTCAAAGACGGCCGATTGGCACG
GCTGGACCGATTACCACGCCTTTGTCGATGATGAAGTAG
back to top