Ggra9382.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra9382.t1
Unique NameGgra9382.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length429
Homology
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BLAST of Ggra9382.t1 vs. uniprot
Match: R7QFL2 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QFL2_CHOCR)

HSP 1 Score: 73.9 bits (180), Expect = 1.370e-10
Identity = 106/432 (24.54%), Postives = 169/432 (39.12%), Query Frame = 0 
Query:    1 MLQLNVNSNIVNGVYCAVTVLMFILLSRF-LQLIASCYNLHVIYDVRKPLRLETTRVFLLMDPGLAPRWLSHQLTILALLFTLLLMAGGFSFVGATEPVYKTVYVRNKVVPATRGNYIDFRNH--ISPDG-------RMVSATFLLLFSAD-CT----TSGLRFSTTYAKTNDLQNLNDTLWSFSEDAIL---NSTCVNEANGFKEDILRTEELGLPTYHNPDCYSFIVSETVRQQQLT--PILSPPYNGTCPYRDLEMRCSNVFGFHCLGSARVQDDWGGFTFFHISRHPVGFIIRSSDTRRPER----EDAQVLEGVALLIPFFSESFSLSIRDHVSSRVEENVSVRKHVRDRNVTQVKTGWMMGTFGSAMVLLVAVIAVAMVMWVRVVWLKGRGRYNSFSANEDALACAVQALFWRTNGERRLRIYLGM 408
            +L L VNS++V+G    +  ++ + + R+  QL+ +  N+ ++YD R P+R  TTR   L      P  L   L  L +L T  ++  GF   G T P ++       V         DF N   + P G       RMVS   L L     CT    T G  +S  Y    DL     TL    E+ +       CVNE    +  + R+  +      + DC    +     +   +  P    P   +CP    +M C       C      + D G  T +++   P    +     R P      + A  +  VA L           +     S V +NV++ +    RNV+ +     + TF       + ++ +A+  WVRVV LKGR  YN+FS+  + L   V     +  G +  R ++G+
Sbjct:    9 VLTLQVNSSLVSGFAALIFDILLLGIIRYHAQLLCAAANIALLYDYRCPIRPATTRWAALTGGPTGPILLVRFLAFLIMLSTAAVIILGFCINGETVPEFENRMYGAVVNFTGMPTKFDFANEFELQPPGCSGDSCKRMVSKRILALTDPSRCTEKNFTHGFVYSYAY---RDL-----TLDDKKEELVQLYPGGICVNEKQFNESWVSRSYRMSNSA--DLDCVLDAIDNPFGEGPASGGPRKVEPIIDSCPMEVKDMYCYKTDRTSCAAWGISEIDTG--TAYYVVLIPDIETMNEESNRIPSAIAKGDPAGYVANVAFLSAVGFNGGPSRLSSMAVSEVLQNVTLNRKQAIRNVSTIDLRIAIPTFAVLATTALVLVVLALASWVRVVLLKGRSEYNTFSSVPEILELVVVEKASKFKGRKTSRRFIGI 428
The following BLAST results are available for this feature:
BLAST of Ggra9382.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
R7QFL21.370e-1024.54Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 73..94
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 365..428
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 31..72
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..11
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 95..339
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 340..364
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..30
NoneNo IPR availableTMHMMTMhelixcoord: 13..35
NoneNo IPR availableTMHMMTMhelixcoord: 342..364
NoneNo IPR availableTMHMMTMhelixcoord: 73..95

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000883_piloncontigtig00000883_pilon:273542..274828 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9382.t1Ggra9382.t1Gracilaria gracilis GNS1m malemRNAtig00000883_pilon 273542..274828 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra9382.t1 ID=Ggra9382.t1|Name=Ggra9382.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=429bp
MLQLNVNSNIVNGVYCAVTVLMFILLSRFLQLIASCYNLHVIYDVRKPLR
LETTRVFLLMDPGLAPRWLSHQLTILALLFTLLLMAGGFSFVGATEPVYK
TVYVRNKVVPATRGNYIDFRNHISPDGRMVSATFLLLFSADCTTSGLRFS
TTYAKTNDLQNLNDTLWSFSEDAILNSTCVNEANGFKEDILRTEELGLPT
YHNPDCYSFIVSETVRQQQLTPILSPPYNGTCPYRDLEMRCSNVFGFHCL
GSARVQDDWGGFTFFHISRHPVGFIIRSSDTRRPEREDAQVLEGVALLIP
FFSESFSLSIRDHVSSRVEENVSVRKHVRDRNVTQVKTGWMMGTFGSAMV
LLVAVIAVAMVMWVRVVWLKGRGRYNSFSANEDALACAVQALFWRTNGER
RLRIYLGMGSGVNRGRVAPLRLSARDVH*
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