Ggra9382.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ggra9382.t1
Unique Name	Ggra9382.t1
Type	polypeptide
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	429

Homology

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BLAST of Ggra9382.t1 vs. uniprot
Match: R7QFL2 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QFL2_CHOCR)

HSP 1 Score: 73.9 bits (180), Expect = 1.370e-10
Identity = 106/432 (24.54%), Postives = 169/432 (39.12%), Query Frame = 0

Query:    1 MLQLNVNSNIVNGVYCAVTVLMFILLSRF-LQLIASCYNLHVIYDVRKPLRLETTRVFLLMDPGLAPRWLSHQLTILALLFTLLLMAGGFSFVGATEPVYKTVYVRNKVVPATRGNYIDFRNH--ISPDG-------RMVSATFLLLFSAD-CT----TSGLRFSTTYAKTNDLQNLNDTLWSFSEDAIL---NSTCVNEANGFKEDILRTEELGLPTYHNPDCYSFIVSETVRQQQLT--PILSPPYNGTCPYRDLEMRCSNVFGFHCLGSARVQDDWGGFTFFHISRHPVGFIIRSSDTRRPER----EDAQVLEGVALLIPFFSESFSLSIRDHVSSRVEENVSVRKHVRDRNVTQVKTGWMMGTFGSAMVLLVAVIAVAMVMWVRVVWLKGRGRYNSFSANEDALACAVQALFWRTNGERRLRIYLGM 408
            +L L VNS++V+G    +  ++ + + R+  QL+ +  N+ ++YD R P+R  TTR   L      P  L   L  L +L T  ++  GF   G T P ++       V         DF N   + P G       RMVS   L L     CT    T G  +S  Y    DL     TL    E+ +       CVNE    +  + R+  +      + DC    +     +   +  P    P   +CP    +M C       C      + D G  T +++   P    +     R P      + A  +  VA L           +     S V +NV++ +    RNV+ +     + TF       + ++ +A+  WVRVV LKGR  YN+FS+  + L   V     +  G +  R ++G+
Sbjct:    9 VLTLQVNSSLVSGFAALIFDILLLGIIRYHAQLLCAAANIALLYDYRCPIRPATTRWAALTGGPTGPILLVRFLAFLIMLSTAAVIILGFCINGETVPEFENRMYGAVVNFTGMPTKFDFANEFELQPPGCSGDSCKRMVSKRILALTDPSRCTEKNFTHGFVYSYAY---RDL-----TLDDKKEELVQLYPGGICVNEKQFNESWVSRSYRMSNSA--DLDCVLDAIDNPFGEGPASGGPRKVEPIIDSCPMEVKDMYCYKTDRTSCAAWGISEIDTG--TAYYVVLIPDIETMNEESNRIPSAIAKGDPAGYVANVAFLSAVGFNGGPSRLSSMAVSEVLQNVTLNRKQAIRNVSTIDLRIAIPTFAVLATTALVLVVLALASWVRVVLLKGRSEYNTFSSVPEILELVVVEKASKFKGRKTSRRFIGI 428

The following BLAST results are available for this feature:

BLAST of Ggra9382.t1 vs. uniprot

BLAST of Ggra9382.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
R7QFL2	1.370e-10	24.54	Uncharacterized protein n=1 Tax=Chondrus crispus T...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 73..94
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 365..428
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 31..72
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..11
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 95..339
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 340..364
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 12..30
None	No IPR available	TMHMM	TMhelix		coord: 13..35
None	No IPR available	TMHMM	TMhelix		coord: 342..364
None	No IPR available	TMHMM	TMhelix		coord: 73..95

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000883_pilon	contig	tig00000883_pilon:273542..274828 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9382.t1	Ggra9382.t1	Gracilaria gracilis GNS1m male	mRNA	tig00000883_pilon 273542..274828 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ggra9382.t1 ID=Ggra9382.t1|Name=Ggra9382.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=429bp
MLQLNVNSNIVNGVYCAVTVLMFILLSRFLQLIASCYNLHVIYDVRKPLR
LETTRVFLLMDPGLAPRWLSHQLTILALLFTLLLMAGGFSFVGATEPVYK
TVYVRNKVVPATRGNYIDFRNHISPDGRMVSATFLLLFSADCTTSGLRFS
TTYAKTNDLQNLNDTLWSFSEDAILNSTCVNEANGFKEDILRTEELGLPT
YHNPDCYSFIVSETVRQQQLTPILSPPYNGTCPYRDLEMRCSNVFGFHCL
GSARVQDDWGGFTFFHISRHPVGFIIRSSDTRRPEREDAQVLEGVALLIP
FFSESFSLSIRDHVSSRVEENVSVRKHVRDRNVTQVKTGWMMGTFGSAMV
LLVAVIAVAMVMWVRVVWLKGRGRYNSFSANEDALACAVQALFWRTNGER
RLRIYLGMGSGVNRGRVAPLRLSARDVH*