Ggra9092.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra9092.t1
Unique NameGgra9092.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length363
Homology
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BLAST of Ggra9092.t1 vs. uniprot
Match: A0A2V3IRY9 (Fez family zinc finger protein 2 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IRY9_9FLOR)

HSP 1 Score: 101 bits (252), Expect = 3.470e-20
Identity = 45/52 (86.54%), Postives = 46/52 (88.46%), Query Frame = 0 
Query:  229 RDRVFACTICSSTFFFKQNRDRHINEVHLGRRPYKCNYDNCNGAFKNLSGLK 280
            R R FACTIC STFFFKQNRDRHINEVHLGRRP+KCNY  CN AFKNLSGLK
Sbjct:  292 RPRQFACTICPSTFFFKQNRDRHINEVHLGRRPHKCNYPQCNAAFKNLSGLK 343
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BLAST of Ggra9092.t1 vs. uniprot
Match: R7QF55 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QF55_CHOCR)

HSP 1 Score: 82.8 bits (203), Expect = 1.250e-13
Identity = 34/47 (72.34%), Postives = 39/47 (82.98%), Query Frame = 0 
Query:  229 RDRVFACTICSSTFFFKQNRDRHINEVHLGRRPYKCNYDNCNGAFKN 275
            R R FAC+ C STFFFKQNRDRH+NEVHLG RP+KCN+  C+ AFKN
Sbjct:  463 RSRQFACSQCPSTFFFKQNRDRHVNEVHLGHRPHKCNFPGCDSAFKN 509
The following BLAST results are available for this feature:
BLAST of Ggra9092.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IRY93.470e-2086.54Fez family zinc finger protein 2 n=1 Tax=Gracilari... [more]
R7QF551.250e-1372.34Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 233..256
e-value: 4.0
score: 16.4
coord: 322..345
e-value: 0.0054
score: 25.9
coord: 293..316
e-value: 0.022
score: 23.9
coord: 262..287
e-value: 0.0038
score: 26.4
IPR013087Zinc finger C2H2-typePFAMPF00096zf-C2H2coord: 262..287
e-value: 0.0035
score: 17.7
coord: 322..345
e-value: 0.0024
score: 18.2
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 324..345
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 235..256
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 295..316
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 264..287
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 262..292
score: 12.840115
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 233..261
score: 11.406082
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 322..345
score: 8.870543
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 293..321
score: 11.177467
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 206..288
e-value: 8.5E-12
score: 46.9
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 320..347
e-value: 6.9E-5
score: 25.0
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 289..319
e-value: 5.5E-7
score: 31.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 199..221
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 199..225
NoneNo IPR availablePANTHERPTHR24390:SF81FI23536P1coord: 213..345
NoneNo IPR availablePANTHERPTHR24390ZINC FINGER PROTEINcoord: 213..345
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 255..302
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 219..267
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 287..340

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000176_piloncontigtig00000176_pilon:173461..174549 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9092.t1Ggra9092.t1Gracilaria gracilis GNS1m malemRNAtig00000176_pilon 173461..174549 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra9092.t1 ID=Ggra9092.t1|Name=Ggra9092.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=363bp
MRKCCGGDCRCPPALCRCPQSAVPTAFQCHQNHVRSLSDSIARSVAAALN
LESSSSLAASVPSQLPSTALPVSAAAVAAPSSGCASRGAVDVVAPPSCCA
GGAGVQSEAASAVVPAANDASVAAIADYGDDVASASAQVVAAASAAAAAS
AAAAAAVASAPASSCCGTAAAVADVKPPAPSVAATSLAQVSQVSATQSSL
PSASASSTAQSAQPRRSSNARSSRSSRSRDRVFACTICSSTFFFKQNRDR
HINEVHLGRRPYKCNYDNCNGAFKNLSGLKQHQKTVHEKARPFKCERCDS
AFGQRNHLRQHVLVVHDKVKMYSCHVCNMSFSNVGNRTQHIKRRHPEVEV
LRSKSRSTQNKS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR036236Znf_C2H2_sf