Ggra9092.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9092.t1
Unique Name	Ggra9092.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	363

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000176_pilon	contig	tig00000176_pilon:173461..174549 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	7159.AAEL012392-PA
Preferred name	ZKSCAN7
PFAMs	KRAB,SCAN,zf-AD,zf-C2H2,zf-C2H2_4,zf-C2H2_6,zf-met
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K09228,ko:K09229
Evalue	2.33e-06
EggNOG OGs	KOG1721@1\|root,KOG1721@2759\|Eukaryota,38BZ9@33154\|Opisthokonta,3BA9A@33208\|Metazoa,3CT35@33213\|Bilateria,426PI@6656\|Arthropoda,3SWQT@50557\|Insecta,4569D@7147\|Diptera,45K0B@7148\|Nematocera
Description	Zinc finger, C2H2 type
COG category	S
BRITE	ko00000,ko03000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9092	Ggra9092	Gracilaria gracilis GNS1m male	gene	tig00000176_pilon 173461..174549 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9092.t1.start1	Ggra9092.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000176_pilon 173461..173463 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9092.t1.CDS1	Ggra9092.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000176_pilon 173461..174549 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9092.t1.exon1	Ggra9092.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000176_pilon 173461..174549 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9092.t1.stop1	Ggra9092.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000176_pilon 174547..174549 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9092.t1	Ggra9092.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000176_pilon 173461..174549 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000176_pilon:173461..174549+
coding sequence from alignment at tig00000176_pilon:173461..174549+

mRNA sequence

>Ggra9092.t1 ID=Ggra9092.t1|Name=Ggra9092.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=363bp
MRKCCGGDCRCPPALCRCPQSAVPTAFQCHQNHVRSLSDSIARSVAAALN
LESSSSLAASVPSQLPSTALPVSAAAVAAPSSGCASRGAVDVVAPPSCCA
GGAGVQSEAASAVVPAANDASVAAIADYGDDVASASAQVVAAASAAAAAS
AAAAAAVASAPASSCCGTAAAVADVKPPAPSVAATSLAQVSQVSATQSSL
PSASASSTAQSAQPRRSSNARSSRSSRSRDRVFACTICSSTFFFKQNRDR
HINEVHLGRRPYKCNYDNCNGAFKNLSGLKQHQKTVHEKARPFKCERCDS
AFGQRNHLRQHVLVVHDKVKMYSCHVCNMSFSNVGNRTQHIKRRHPEVEV
LRSKSRSTQNKS*

spliced messenger RNA

>Ggra9092.t1 ID=Ggra9092.t1|Name=Ggra9092.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1089bp|location=Sequence derived from alignment at tig00000176_pilon:173461..174549+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCAAGTGCTGCGGCGGCGATTGCCGTTGTCCGCCAGCGCTTTGTCG
CTGCCCGCAGTCGGCGGTGCCCACGGCCTTCCAGTGCCATCAGAATCATG
TGCGTTCTCTGTCCGATTCCATCGCGCGCTCCGTCGCCGCTGCGCTCAAC
CTGGAGTCGTCCTCTTCGTTGGCTGCGTCGGTGCCGTCCCAGCTGCCGTC
CACCGCGCTTCCAGTGTCCGCAGCCGCTGTGGCCGCACCTTCGTCGGGCT
GTGCATCGCGTGGTGCGGTTGATGTTGTCGCGCCGCCTTCCTGCTGTGCG
GGCGGGGCAGGTGTTCAGAGTGAGGCCGCTTCCGCTGTCGTTCCGGCTGC
GAACGATGCTTCCGTTGCTGCCATCGCTGATTACGGCGAtgatgttgctt
ctgcgtctgcgcaagtggttgctgccgcctccgctgctgctgccgcctcc
gctgctgctgctgccgccgtcgcctcggcgcctgcgtccagttgctgcgg
cacggccgccgctgttgcGGATGTGAAGCCCCCCGCCCCTTCGGTAGCTG
CCACGTCGCTGGCACAAGTGTCGCAGGTATCTGCGACACAGTCGTCGCTG
CCCAGTGCATCTGCATCGTCCACAGCACAGTCTGCCCAACCTAGACGTTC
TTCCAACGCGCGTTCGTCGCGATCGTCACGCTCGCGCGACCGCGTCTTTG
CATGCACCATCTGTTCCTCCACCTTCTTTTTCAAGCAGAACAGAGATCGG
CACATAAACGAGGTACATCTCGGCCGACGTCCGTACAAGTGCAATTACGA
TAATTGTAATGGCGCTTTCAAGAACCTCAGTGGACTTAAACAACATCAGA
AGACTGTGCATGAGAAGGCTAGACCGTTTAAGTGTGAACGATGTGACAGT
GCGTTCGGGCAGCGTAATCACTTGCGCCAGCATGTTTTGGTGGTACATGA
CAAGGTTAAGATGTACTCTTGTCATGTGTGTAACATGTCCTTTTCTAATG
TTGGCAATCGCACTCAGCACATCAAGCGTCGACATCCTGAAGTCGAAGTT
CTTAGGAGCAAGTCCCGCTCAACCCAAAACAAATCTTAG

protein sequence of Ggra9092.t1

>Ggra9092.t1 ID=Ggra9092.t1|Name=Ggra9092.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=363bp
MRKCCGGDCRCPPALCRCPQSAVPTAFQCHQNHVRSLSDSIARSVAAALN
LESSSSLAASVPSQLPSTALPVSAAAVAAPSSGCASRGAVDVVAPPSCCA
GGAGVQSEAASAVVPAANDASVAAIADYGDDVASASAQVVAAASAAAAAS
AAAAAAVASAPASSCCGTAAAVADVKPPAPSVAATSLAQVSQVSATQSSL
PSASASSTAQSAQPRRSSNARSSRSSRSRDRVFACTICSSTFFFKQNRDR
HINEVHLGRRPYKCNYDNCNGAFKNLSGLKQHQKTVHEKARPFKCERCDS
AFGQRNHLRQHVLVVHDKVKMYSCHVCNMSFSNVGNRTQHIKRRHPEVEV
LRSKSRSTQNKS*

mRNA from alignment at tig00000176_pilon:173461..174549+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9092.t1 ID=Ggra9092.t1|Name=Ggra9092.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1089bp|location=Sequence derived from alignment at tig00000176_pilon:173461..174549+ (Gracilaria gracilis GNS1m male)
ATGCGCAAGTGCTGCGGCGGCGATTGCCGTTGTCCGCCAGCGCTTTGTCG
CTGCCCGCAGTCGGCGGTGCCCACGGCCTTCCAGTGCCATCAGAATCATG
TGCGTTCTCTGTCCGATTCCATCGCGCGCTCCGTCGCCGCTGCGCTCAAC
CTGGAGTCGTCCTCTTCGTTGGCTGCGTCGGTGCCGTCCCAGCTGCCGTC
CACCGCGCTTCCAGTGTCCGCAGCCGCTGTGGCCGCACCTTCGTCGGGCT
GTGCATCGCGTGGTGCGGTTGATGTTGTCGCGCCGCCTTCCTGCTGTGCG
GGCGGGGCAGGTGTTCAGAGTGAGGCCGCTTCCGCTGTCGTTCCGGCTGC
GAACGATGCTTCCGTTGCTGCCATCGCTGATTACGGCGAtgatgttgctt
ctgcgtctgcgcaagtggttgctgccgcctccgctgctgctgccgcctcc
gctgctgctgctgccgccgtcgcctcggcgcctgcgtccagttgctgcgg
cacggccgccgctgttgcGGATGTGAAGCCCCCCGCCCCTTCGGTAGCTG
CCACGTCGCTGGCACAAGTGTCGCAGGTATCTGCGACACAGTCGTCGCTG
CCCAGTGCATCTGCATCGTCCACAGCACAGTCTGCCCAACCTAGACGTTC
TTCCAACGCGCGTTCGTCGCGATCGTCACGCTCGCGCGACCGCGTCTTTG
CATGCACCATCTGTTCCTCCACCTTCTTTTTCAAGCAGAACAGAGATCGG
CACATAAACGAGGTACATCTCGGCCGACGTCCGTACAAGTGCAATTACGA
TAATTGTAATGGCGCTTTCAAGAACCTCAGTGGACTTAAACAACATCAGA
AGACTGTGCATGAGAAGGCTAGACCGTTTAAGTGTGAACGATGTGACAGT
GCGTTCGGGCAGCGTAATCACTTGCGCCAGCATGTTTTGGTGGTACATGA
CAAGGTTAAGATGTACTCTTGTCATGTGTGTAACATGTCCTTTTCTAATG
TTGGCAATCGCACTCAGCACATCAAGCGTCGACATCCTGAAGTCGAAGTT
CTTAGGAGCAAGTCCCGCTCAACCCAAAACAAATCTTAG

Coding sequence (CDS) from alignment at tig00000176_pilon:173461..174549+

>Ggra9092.t1 ID=Ggra9092.t1|Name=Ggra9092.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1089bp|location=Sequence derived from alignment at tig00000176_pilon:173461..174549+ (Gracilaria gracilis GNS1m male)
ATGCGCAAGTGCTGCGGCGGCGATTGCCGTTGTCCGCCAGCGCTTTGTCG
CTGCCCGCAGTCGGCGGTGCCCACGGCCTTCCAGTGCCATCAGAATCATG
TGCGTTCTCTGTCCGATTCCATCGCGCGCTCCGTCGCCGCTGCGCTCAAC
CTGGAGTCGTCCTCTTCGTTGGCTGCGTCGGTGCCGTCCCAGCTGCCGTC
CACCGCGCTTCCAGTGTCCGCAGCCGCTGTGGCCGCACCTTCGTCGGGCT
GTGCATCGCGTGGTGCGGTTGATGTTGTCGCGCCGCCTTCCTGCTGTGCG
GGCGGGGCAGGTGTTCAGAGTGAGGCCGCTTCCGCTGTCGTTCCGGCTGC
GAACGATGCTTCCGTTGCTGCCATCGCTGATTACGGCGAtgatgttgctt
ctgcgtctgcgcaagtggttgctgccgcctccgctgctgctgccgcctcc
gctgctgctgctgccgccgtcgcctcggcgcctgcgtccagttgctgcgg
cacggccgccgctgttgcGGATGTGAAGCCCCCCGCCCCTTCGGTAGCTG
CCACGTCGCTGGCACAAGTGTCGCAGGTATCTGCGACACAGTCGTCGCTG
CCCAGTGCATCTGCATCGTCCACAGCACAGTCTGCCCAACCTAGACGTTC
TTCCAACGCGCGTTCGTCGCGATCGTCACGCTCGCGCGACCGCGTCTTTG
CATGCACCATCTGTTCCTCCACCTTCTTTTTCAAGCAGAACAGAGATCGG
CACATAAACGAGGTACATCTCGGCCGACGTCCGTACAAGTGCAATTACGA
TAATTGTAATGGCGCTTTCAAGAACCTCAGTGGACTTAAACAACATCAGA
AGACTGTGCATGAGAAGGCTAGACCGTTTAAGTGTGAACGATGTGACAGT
GCGTTCGGGCAGCGTAATCACTTGCGCCAGCATGTTTTGGTGGTACATGA
CAAGGTTAAGATGTACTCTTGTCATGTGTGTAACATGTCCTTTTCTAATG
TTGGCAATCGCACTCAGCACATCAAGCGTCGACATCCTGAAGTCGAAGTT
CTTAGGAGCAAGTCCCGCTCAACCCAAAACAAATCTTAG