Ggra9080.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra9080.t1
Unique NameGgra9080.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length227
Homology
BLAST of Ggra9080.t1 vs. uniprot
Match: A0A2V3IRZ4 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IRZ4_9FLOR)

HSP 1 Score: 255 bits (652), Expect = 1.110e-74
Identity = 133/226 (58.85%), Postives = 172/226 (76.11%), Query Frame = 0
Query:    6 SPDPTVTDTDLCSNLPSVVPDSSLLARTENFQRVRLTLQVAGPNMTNTCQLKGDVVQRFVNLSAMSTLSNAHLWFVTSIEDGPAVYEDGSTLVVVEE-----ELGATESVSPQVSSSPEG-FEELFPGSVIFGITVFLNPFSVELVEAAYVDYVRSQNIVRALRRRGHDEIHWTGIISEPVVVDQRKAPTVSVSSGVSGGYVAGIAFGTLLIVGAAVFIIAEAGWP 225
            SP P       C NLP +VPDSSLLART+NFQRVR+ +QVAGPN+T++C L   + QRF+NLSAM+TLSN +LWF+TSIEDGPAVY+  S+LV++E+     ++  T S SP  S S E   +EL+PGSV+F +T FL+PFSVEL   AY++Y++SQNIVRAL   G+D+I W G+I EP ++D R+A  V VSSG+SGGY+AGIAFGT++I+GAAVFI AEA  P
Sbjct: 2135 SPSPGAVPGLNCPNLPPIVPDSSLLARTDNFQRVRMGMQVAGPNLTSSCDLTNVIAQRFINLSAMNTLSNRNLWFITSIEDGPAVYDGESSLVLIEDLEEVTDIEITLSNSPSPSQSLEASVQELYPGSVVFRVTAFLDPFSVELAIGAYIEYIQSQNIVRALAVTGYDDIQWIGMILEPAIIDTRRAENVVVSSGLSGGYIAGIAFGTIVILGAAVFIAAEARRP 2360          
BLAST of Ggra9080.t1 vs. uniprot
Match: R7QNU8 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QNU8_CHOCR)

HSP 1 Score: 149 bits (375), Expect = 8.190e-38
Identity = 89/225 (39.56%), Postives = 133/225 (59.11%), Query Frame = 0
Query:    2 IWTPSPDPTVTDTDLCSNLPSVVPDSSLLARTENFQRVRLTLQVAGPNMTNTCQLKGDVVQRFVNLSAMSTLSNAHLWFVTSIEDGPAVYEDGSTLVVVEE--ELGAT-ESVSPQVSSSPEGFEELFPGSVIFGITVFLNPFSVELVEAAYVDYVRSQNIVRALRRRGHDEIHWTGIISEPVVVDQRKAPTVSVSSGVS--GGYVAGIAFGTLLIVGAAVFIIAE 221
            +W+P P         C++   +V D   L  T N+QRV + +QVAGPN+TNTC L   V++RF+N SA +T SNA  W+VT +EDGPAVY    +LV + E  E G+  E+ SP  S++ +   EL+ GSVIF +  ++ P SV+L   +Y+DYV SQ IV AL+ +G  +I WTG++  P ++D R A         S  GG +  +  G + +V  A+F++ +
Sbjct:  444 VWSPVPSEEYVPLFPCADY-GLVHDMRELNHTNNYQRVSMQIQVAGPNVTNTCGLTERVLERFINFSAANTQSNARQWYVTRVEDGPAVYSGQFSLVTIVEPDEFGSVNETGSPSPSATAKA-AELYRGSVIFAVVAYMKPASVDLAAGSYMDYVMSQRIVYALQDQGFRDILWTGMLMSPQLLDLRTASVEDSEEKGSNIGGTIGLVCLGVVGVVVLAIFVVKD 666          
The following BLAST results are available for this feature:
BLAST of Ggra9080.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IRZ41.110e-7458.85Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QNU88.190e-3839.56Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 221..226
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 200..220
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..199
NoneNo IPR availableTMHMMTMhelixcoord: 198..220

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000176_piloncontigtig00000176_pilon:138027..138707 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9080.t1Ggra9080.t1Gracilaria gracilis GNS1m malemRNAtig00000176_pilon 138027..138707 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra9080.t1 ID=Ggra9080.t1|Name=Ggra9080.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=227bp
MIWTPSPDPTVTDTDLCSNLPSVVPDSSLLARTENFQRVRLTLQVAGPNM
TNTCQLKGDVVQRFVNLSAMSTLSNAHLWFVTSIEDGPAVYEDGSTLVVV
EEELGATESVSPQVSSSPEGFEELFPGSVIFGITVFLNPFSVELVEAAYV
DYVRSQNIVRALRRRGHDEIHWTGIISEPVVVDQRKAPTVSVSSGVSGGY
VAGIAFGTLLIVGAAVFIIAEAGWPV*
back to top