Ggra9080.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9080.t1
Unique NameGgra9080.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length227
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000176_piloncontigtig00000176_pilon:138027..138707 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9080Ggra9080Gracilaria gracilis GNS1m malegenetig00000176_pilon 138027..138707 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9080.t1.stop1Ggra9080.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000176_pilon 138027..138029 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9080.t1.CDS1Ggra9080.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000176_pilon 138027..138707 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9080.t1.exon1Ggra9080.t1.exon1Gracilaria gracilis GNS1m maleexontig00000176_pilon 138027..138707 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9080.t1.start1Ggra9080.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000176_pilon 138705..138707 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9080.t1Ggra9080.t1Gracilaria gracilis GNS1m malepolypeptidetig00000176_pilon 138027..138707 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9080.t1 ID=Ggra9080.t1|Name=Ggra9080.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=227bp
MIWTPSPDPTVTDTDLCSNLPSVVPDSSLLARTENFQRVRLTLQVAGPNM
TNTCQLKGDVVQRFVNLSAMSTLSNAHLWFVTSIEDGPAVYEDGSTLVVV
EEELGATESVSPQVSSSPEGFEELFPGSVIFGITVFLNPFSVELVEAAYV
DYVRSQNIVRALRRRGHDEIHWTGIISEPVVVDQRKAPTVSVSSGVSGGY
VAGIAFGTLLIVGAAVFIIAEAGWPV*
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spliced messenger RNA

>Ggra9080.t1 ID=Ggra9080.t1|Name=Ggra9080.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=681bp|location=Sequence derived from alignment at tig00000176_pilon:138027..138707- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTTGGACGCCATCGCCGGATCCGACTGTGACGGACACGGATCTATG
CTCAAATCTGCCATCGGTCGTGCCGGACTCCTCTCTTTTGGCAAGGACGG
AAAACTTCCAGAGAGTGCGGCTCACACTTCAGGTTGCAGGTCCGAATATG
ACCAACACGTGCCAGCTGAAAGGTGATGTTGTTCAGAGGTTTGTCAACCT
GAGCGCTATGAGCACCCTTTCTAATGCTCATCTTTGGTTTGTTACGTCCA
TCGAAGATGGACCGGCGGTGTATGAAGATGGGTCGACCCTGGTCGTTGTG
GAGGAGGAACTCGGGGCGACCGAATCCGTGAGTCCACAGGTCTCTTCAAG
TCCTGAGGGCTTTGAGGAACTCTTCCCGGGCTCTGTCATATTTGGGATCA
CGGTCTTCTTGAATCCGTTTTCGGTTGAGCTTGTGGAAGCGGCGTACGTA
GACTACGTTCGATCGCAAAACATAGTGAGGGCACTGAGGCGAAGGGGTCA
CGATGAGATCCACTGGACCGGTATAATTTCGGAACCGGTCGTAGTTGACC
AGCGGAAGGCGCCCACCGTAAGCGTTAGTAGCGGGGTCTCAGGGGGCTAC
GTGGCTGGTATAGCGTTTGGCACCCTCTTGATCGTGGGCGCCGCCGTGTT
CATAATAGCGGAAGCTGGGTGGCCGGTATAG
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protein sequence of Ggra9080.t1

>Ggra9080.t1 ID=Ggra9080.t1|Name=Ggra9080.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=227bp
MIWTPSPDPTVTDTDLCSNLPSVVPDSSLLARTENFQRVRLTLQVAGPNM
TNTCQLKGDVVQRFVNLSAMSTLSNAHLWFVTSIEDGPAVYEDGSTLVVV
EEELGATESVSPQVSSSPEGFEELFPGSVIFGITVFLNPFSVELVEAAYV
DYVRSQNIVRALRRRGHDEIHWTGIISEPVVVDQRKAPTVSVSSGVSGGY
VAGIAFGTLLIVGAAVFIIAEAGWPV*
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mRNA from alignment at tig00000176_pilon:138027..138707-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9080.t1 ID=Ggra9080.t1|Name=Ggra9080.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=681bp|location=Sequence derived from alignment at tig00000176_pilon:138027..138707- (Gracilaria gracilis GNS1m male)
ATGATTTGGACGCCATCGCCGGATCCGACTGTGACGGACACGGATCTATG
CTCAAATCTGCCATCGGTCGTGCCGGACTCCTCTCTTTTGGCAAGGACGG
AAAACTTCCAGAGAGTGCGGCTCACACTTCAGGTTGCAGGTCCGAATATG
ACCAACACGTGCCAGCTGAAAGGTGATGTTGTTCAGAGGTTTGTCAACCT
GAGCGCTATGAGCACCCTTTCTAATGCTCATCTTTGGTTTGTTACGTCCA
TCGAAGATGGACCGGCGGTGTATGAAGATGGGTCGACCCTGGTCGTTGTG
GAGGAGGAACTCGGGGCGACCGAATCCGTGAGTCCACAGGTCTCTTCAAG
TCCTGAGGGCTTTGAGGAACTCTTCCCGGGCTCTGTCATATTTGGGATCA
CGGTCTTCTTGAATCCGTTTTCGGTTGAGCTTGTGGAAGCGGCGTACGTA
GACTACGTTCGATCGCAAAACATAGTGAGGGCACTGAGGCGAAGGGGTCA
CGATGAGATCCACTGGACCGGTATAATTTCGGAACCGGTCGTAGTTGACC
AGCGGAAGGCGCCCACCGTAAGCGTTAGTAGCGGGGTCTCAGGGGGCTAC
GTGGCTGGTATAGCGTTTGGCACCCTCTTGATCGTGGGCGCCGCCGTGTT
CATAATAGCGGAAGCTGGGTGGCCGGTATAG
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Coding sequence (CDS) from alignment at tig00000176_pilon:138027..138707-

>Ggra9080.t1 ID=Ggra9080.t1|Name=Ggra9080.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=681bp|location=Sequence derived from alignment at tig00000176_pilon:138027..138707- (Gracilaria gracilis GNS1m male)
ATGATTTGGACGCCATCGCCGGATCCGACTGTGACGGACACGGATCTATG
CTCAAATCTGCCATCGGTCGTGCCGGACTCCTCTCTTTTGGCAAGGACGG
AAAACTTCCAGAGAGTGCGGCTCACACTTCAGGTTGCAGGTCCGAATATG
ACCAACACGTGCCAGCTGAAAGGTGATGTTGTTCAGAGGTTTGTCAACCT
GAGCGCTATGAGCACCCTTTCTAATGCTCATCTTTGGTTTGTTACGTCCA
TCGAAGATGGACCGGCGGTGTATGAAGATGGGTCGACCCTGGTCGTTGTG
GAGGAGGAACTCGGGGCGACCGAATCCGTGAGTCCACAGGTCTCTTCAAG
TCCTGAGGGCTTTGAGGAACTCTTCCCGGGCTCTGTCATATTTGGGATCA
CGGTCTTCTTGAATCCGTTTTCGGTTGAGCTTGTGGAAGCGGCGTACGTA
GACTACGTTCGATCGCAAAACATAGTGAGGGCACTGAGGCGAAGGGGTCA
CGATGAGATCCACTGGACCGGTATAATTTCGGAACCGGTCGTAGTTGACC
AGCGGAAGGCGCCCACCGTAAGCGTTAGTAGCGGGGTCTCAGGGGGCTAC
GTGGCTGGTATAGCGTTTGGCACCCTCTTGATCGTGGGCGCCGCCGTGTT
CATAATAGCGGAAGCTGGGTGGCCGGTATAG
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