Ggra9033.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ggra9033.t1
Unique Name	Ggra9033.t1
Type	polypeptide
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	165

Homology

[Close]

BLAST of Ggra9033.t1 vs. uniprot
Match: A0A835A0V5 (RING-type E3 ubiquitin transferase n=2 Tax=Digitaria exilis TaxID=1010633 RepID=A0A835A0V5_9POAL)

HSP 1 Score: 62.8 bits (151), Expect = 3.100e-9
Identity = 24/58 (41.38%), Postives = 39/58 (67.24%), Query Frame = 0

Query:  107 RAAASAQLNCTICLDALDGGQKARYLRHCSHSFHAKCIEQWLRYANRCPLCGTPIVQQ 164
            +AAA+   +C +CL+A + G + R L  C HSFHA+C++ WLR ++ CP+C   +V +
Sbjct:   78 KAAAAVGGDCAVCLEAFEPGDRCRRLPRCEHSFHAECVDSWLRKSSACPVCRADVVDR 135

[Close]

BLAST of Ggra9033.t1 vs. uniprot
Match: M2XB59 (Ring finger protein-like protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XB59_GALSU)

HSP 1 Score: 64.7 bits (156), Expect = 3.180e-9
Identity = 28/45 (62.22%), Postives = 33/45 (73.33%), Query Frame = 0

Query:  116 CTICLDALDGGQKARYLRHCSHSFHAKCIEQWLRYANRCPLCGTP 160
            C +CLD +  G K R L+ C H+FH+ CIEQWLR ANRCPLC TP
Sbjct:  259 CAVCLDPIMPGVKLRVLQ-CRHAFHSPCIEQWLRSANRCPLCNTP 302

[Close]

BLAST of Ggra9033.t1 vs. uniprot
Match: A0A3L6S278 (RING-type E3 ubiquitin transferase n=3 Tax=Panicum TaxID=4539 RepID=A0A3L6S278_PANMI)

HSP 1 Score: 62.0 bits (149), Expect = 5.740e-9
Identity = 22/50 (44.00%), Postives = 34/50 (68.00%), Query Frame = 0

Query:  115 NCTICLDALDGGQKARYLRHCSHSFHAKCIEQWLRYANRCPLCGTPIVQQ 164
            +C +CL+A + G + R L  C HSFHA+C++ WLR +  CP+C T +V +
Sbjct:   87 DCAVCLEAFEPGDRCRRLPRCEHSFHAECVDSWLRKSGACPVCRTDVVDR 136

[Close]

BLAST of Ggra9033.t1 vs. uniprot
Match: A0A0D9WP60 (RING-type E3 ubiquitin transferase n=1 Tax=Leersia perrieri TaxID=77586 RepID=A0A0D9WP60_9ORYZ)

HSP 1 Score: 60.5 bits (145), Expect = 1.320e-8
Identity = 22/48 (45.83%), Postives = 32/48 (66.67%), Query Frame = 0

Query:  115 NCTICLDALDGGQKARYLRHCSHSFHAKCIEQWLRYANRCPLCGTPIV 162
            +C +CL+AL+ G + R L  C HSFHA C++ WLR +  CP+C   +V
Sbjct:   67 DCAVCLEALEAGDRCRRLPRCEHSFHAPCVDSWLRKSRWCPVCRADVV 114

[Close]

BLAST of Ggra9033.t1 vs. uniprot
Match: W1P7Q1 (RING-type domain-containing protein n=1 Tax=Amborella trichopoda TaxID=13333 RepID=W1P7Q1_AMBTC)

HSP 1 Score: 60.8 bits (146), Expect = 1.480e-8
Identity = 23/48 (47.92%), Postives = 31/48 (64.58%), Query Frame = 0

Query:  114 LNCTICLDALDGGQKARYLRHCSHSFHAKCIEQWLRYANRCPLCGTPI 161
            ++C +CLD   GG K R L  C HSFHA+C++ WL  A  CP+C T +
Sbjct:   86 IDCAVCLDGFQGGDKCRLLPICKHSFHAQCVDSWLLKAPICPICRTSV 133

[Close]

BLAST of Ggra9033.t1 vs. uniprot
Match: A0A1E5VC43 (RING-type domain-containing protein n=1 Tax=Dichanthelium oligosanthes TaxID=888268 RepID=A0A1E5VC43_9POAL)

HSP 1 Score: 60.8 bits (146), Expect = 2.080e-8
Identity = 27/57 (47.37%), Postives = 36/57 (63.16%), Query Frame = 0

Query:  108 AAASAQLNCTICLDALDGGQKARYLRHCSHSFHAKCIEQWLRYANRCPLCGTPIVQQ 164
            AAA  +  CT+CL+AL GG+ AR L  C+H+FH  CI+ WL     CP+C   +V Q
Sbjct:  110 AAAHGETQCTVCLEALKGGECARRLPACAHAFHVGCIDMWLDSHATCPVCRCHVVPQ 166

[Close]

BLAST of Ggra9033.t1 vs. uniprot
Match: A0A0E0HNX6 (RING-type E3 ubiquitin transferase n=9 Tax=Oryza TaxID=4527 RepID=A0A0E0HNX6_ORYNI)

HSP 1 Score: 60.5 bits (145), Expect = 2.280e-8
Identity = 22/48 (45.83%), Postives = 32/48 (66.67%), Query Frame = 0

Query:  115 NCTICLDALDGGQKARYLRHCSHSFHAKCIEQWLRYANRCPLCGTPIV 162
            +C +CL+AL+ G + R L  C HSFHA C++ WLR +  CP+C   +V
Sbjct:   90 DCAVCLEALEAGDRCRRLPRCEHSFHAPCVDSWLRKSRWCPVCRADVV 137

[Close]

BLAST of Ggra9033.t1 vs. uniprot
Match: RING-H2 finger protein ATL74 n=1 Tax=Amborella trichopoda TaxID=13333 RepID=UPI0005D30BBB (RING-H2 finger protein ATL74 n=1 Tax=Amborella trichopoda TaxID=13333 RepID=UPI0005D30BBB)

HSP 1 Score: 60.8 bits (146), Expect = 2.470e-8
Identity = 23/48 (47.92%), Postives = 31/48 (64.58%), Query Frame = 0

Query:  114 LNCTICLDALDGGQKARYLRHCSHSFHAKCIEQWLRYANRCPLCGTPI 161
            ++C +CLD   GG K R L  C HSFHA+C++ WL  A  CP+C T +
Sbjct:   86 IDCAVCLDGFQGGDKCRLLPICKHSFHAQCVDSWLLKAPICPICRTSV 133

[Close]

BLAST of Ggra9033.t1 vs. uniprot
Match: A0A811S3S1 (RING-type E3 ubiquitin transferase n=2 Tax=Miscanthus lutarioriparius TaxID=422564 RepID=A0A811S3S1_9POAL)

HSP 1 Score: 60.1 bits (144), Expect = 2.730e-8
Identity = 21/50 (42.00%), Postives = 32/50 (64.00%), Query Frame = 0

Query:  115 NCTICLDALDGGQKARYLRHCSHSFHAKCIEQWLRYANRCPLCGTPIVQQ 164
            +C +CL+A   G + R L  C HSFHA C++ WLR ++ CP+C   +V +
Sbjct:   84 DCAVCLEAFQAGDRCRQLPRCEHSFHADCVDSWLRKSSACPVCRADVVDR 133

[Close]

BLAST of Ggra9033.t1 vs. uniprot
Match: A0A0E0LAB3 (RING-type E3 ubiquitin transferase n=1 Tax=Oryza punctata TaxID=4537 RepID=A0A0E0LAB3_ORYPU)

HSP 1 Score: 60.5 bits (145), Expect = 2.930e-8
Identity = 22/48 (45.83%), Postives = 32/48 (66.67%), Query Frame = 0

Query:  115 NCTICLDALDGGQKARYLRHCSHSFHAKCIEQWLRYANRCPLCGTPIV 162
            +C +CL+AL+ G + R L  C HSFHA C++ WLR +  CP+C   +V
Sbjct:   78 DCAVCLEALEAGDRCRRLPRCEHSFHAPCVDSWLRKSRWCPVCRADVV 125

The following BLAST results are available for this feature:

BLAST of Ggra9033.t1 vs. uniprot

BLAST of Ggra9033.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A835A0V5	3.100e-9	41.38	RING-type E3 ubiquitin transferase n=2 Tax=Digitar...	[more]
M2XB59	3.180e-9	62.22	Ring finger protein-like protein n=1 Tax=Galdieria...	[more]
A0A3L6S278	5.740e-9	44.00	RING-type E3 ubiquitin transferase n=3 Tax=Panicum...	[more]
A0A0D9WP60	1.320e-8	45.83	RING-type E3 ubiquitin transferase n=1 Tax=Leersia...	[more]
W1P7Q1	1.480e-8	47.92	RING-type domain-containing protein n=1 Tax=Ambore...	[more]
A0A1E5VC43	2.080e-8	47.37	RING-type domain-containing protein n=1 Tax=Dichan...	[more]
A0A0E0HNX6	2.280e-8	45.83	RING-type E3 ubiquitin transferase n=9 Tax=Oryza T...	[more]
RING-H2 finger protein ATL74 n=1 Tax=Amborella trichopoda TaxID=13333 RepID=UPI0005D30BBB	2.470e-8	47.92	RING-H2 finger protein ATL74 n=1 Tax=Amborella tri...	[more]
A0A811S3S1	2.730e-8	42.00	RING-type E3 ubiquitin transferase n=2 Tax=Miscant...	[more]
A0A0E0LAB3	2.930e-8	45.83	RING-type E3 ubiquitin transferase n=1 Tax=Oryza p...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 116..157 e-value: 2.0E-6 score: 37.3
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 115..157 e-value: 9.0E-14 score: 51.6
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 116..157 score: 12.002429
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 102..164 e-value: 5.3E-17 score: 62.7
None	No IPR available	PANTHER	PTHR14155:SF550	RING-H2 FINGER PROTEIN ATL40	coord: 94..157
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 94..157
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 35..164
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 6..25
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 26..34
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..34
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..5
None	No IPR available	CDD	cd16448	RING-H2	coord: 116..157 e-value: 6.08809E-10 score: 50.1431
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 115..163
None	No IPR available	TMHMM	TMhelix		coord: 15..37

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000860_pilon	contig	tig00000860_pilon:1379618..1380223 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9033.t1	Ggra9033.t1	Gracilaria gracilis GNS1m male	mRNA	tig00000860_pilon 1379618..1380223 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ggra9033.t1 ID=Ggra9033.t1|Name=Ggra9033.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=165bp
MTDSMLSCLLPVAIFAVAHATLLLCAVGVWSCHAAYLGVKLAARLMLAVR
IDGDMRGVQRALGAVLSALQWARSLLCLACSVVAQFCMMEEQQLAMEQFC
PTLSASRAAASAQLNCTICLDALDGGQKARYLRHCSHSFHAKCIEQWLRY
ANRCPLCGTPIVQQ*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD