Ggra9033.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9033.t1
Unique NameGgra9033.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length165
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:1379618..1380223 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog40148.OGLUM01G08090.1
PFAMszf-RING_2
Max annot lvl35493|Streptophyta
Evalue1.59e-11
EggNOG OGsKOG0800@1|root,KOG0800@2759|Eukaryota,385J1@33090|Viridiplantae,3GZNZ@35493|Streptophyta,3M6W2@4447|Liliopsida,3IHZ8@38820|Poales
DescriptionRING-H2 finger protein
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9033Ggra9033Gracilaria gracilis GNS1m malegenetig00000860_pilon 1379618..1380223 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9033.t1Ggra9033.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 1379618..1380223 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9033.t1.stop1Ggra9033.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 1379618..1379620 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9033.t1.CDS1Ggra9033.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 1379618..1379690 -
Ggra9033.t1.CDS2Ggra9033.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000860_pilon 1379802..1380223 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9033.t1.exon1Ggra9033.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 1379618..1379690 -
Ggra9033.t1.exon2Ggra9033.t1.exon2Gracilaria gracilis GNS1m maleexontig00000860_pilon 1379802..1380223 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9033.t1.intron1Ggra9033.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000860_pilon 1379691..1379801 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9033.t1.start1Ggra9033.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 1380221..1380223 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9033.t1 ID=Ggra9033.t1|Name=Ggra9033.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=165bp
MTDSMLSCLLPVAIFAVAHATLLLCAVGVWSCHAAYLGVKLAARLMLAVR
IDGDMRGVQRALGAVLSALQWARSLLCLACSVVAQFCMMEEQQLAMEQFC
PTLSASRAAASAQLNCTICLDALDGGQKARYLRHCSHSFHAKCIEQWLRY
ANRCPLCGTPIVQQ*
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spliced messenger RNA

>Ggra9033.t1 ID=Ggra9033.t1|Name=Ggra9033.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=495bp|location=Sequence derived from alignment at tig00000860_pilon:1379618..1380223- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGACAGCATGCTGAGCTGCCTGCTGCCGGTGGCCATCTTCGCGGT
GGCGCACGCGACTCTGCTGCTCTGCGCGGTGGGCGTATGGAGCTGTCACG
CGGCGTACCTGGGCGTCAAGCTGGCGGCCAGGCTGATGTTGGCTGTGCGT
ATTGATGGCGACATGCGCGGCGTGCAACGCGCGCTGGGCGCAGTGCTGTC
GGCACTGCAGTGGGCGAGGTCGCTGCTGTGCTTGGCGTGTTCCGTGGTGG
CGCAGTTCTGCATGATGGAGGAGCAGCAGCTGGCGATGGAGCAGTTTTGC
CCGACGTTGAGTGCTTCGCGGGCGGCGGCGTCCGCGCAGCTCAACTGTAC
AATCTGTCTGGACGCGCTGGATGGCGGGCAAAAGGCACGCTATCTCAGGC
ACTGTTCACATAGCTTTCATGCAAAATGCATCGAACAATGGCTTCGCTAC
GCAAATCGATGCCCGCTGTGCGGCACGCCCATCGTGCAGCAATGA
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protein sequence of Ggra9033.t1

>Ggra9033.t1 ID=Ggra9033.t1|Name=Ggra9033.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=165bp
MTDSMLSCLLPVAIFAVAHATLLLCAVGVWSCHAAYLGVKLAARLMLAVR
IDGDMRGVQRALGAVLSALQWARSLLCLACSVVAQFCMMEEQQLAMEQFC
PTLSASRAAASAQLNCTICLDALDGGQKARYLRHCSHSFHAKCIEQWLRY
ANRCPLCGTPIVQQ*
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mRNA from alignment at tig00000860_pilon:1379618..1380223-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9033.t1 ID=Ggra9033.t1|Name=Ggra9033.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=606bp|location=Sequence derived from alignment at tig00000860_pilon:1379618..1380223- (Gracilaria gracilis GNS1m male)
ATGACCGACAGCATGCTGAGCTGCCTGCTGCCGGTGGCCATCTTCGCGGT
GGCGCACGCGACTCTGCTGCTCTGCGCGGTGGGCGTATGGAGCTGTCACG
CGGCGTACCTGGGCGTCAAGCTGGCGGCCAGGCTGATGTTGGCTGTGCGT
ATTGATGGCGACATGCGCGGCGTGCAACGCGCGCTGGGCGCAGTGCTGTC
GGCACTGCAGTGGGCGAGGTCGCTGCTGTGCTTGGCGTGTTCCGTGGTGG
CGCAGTTCTGCATGATGGAGGAGCAGCAGCTGGCGATGGAGCAGTTTTGC
CCGACGTTGAGTGCTTCGCGGGCGGCGGCGTCCGCGCAGCTCAACTGTAC
AATCTGTCTGGACGCGCTGGATGGCGGGCAAAAGGCACGCTATCTCAGGC
ACTGTTCACATAGCTTTCATGCGTAAGTTATCTCTGTATCTATGTCTTAT
GCGCGTGTGTGCACGCCTGCAAAAGTTGGGCGCAATCATAACATGTGTGT
TTGGTTTGGTGCGTTGCTTGTTGCGGCACACAGAAAATGCATCGAACAAT
GGCTTCGCTACGCAAATCGATGCCCGCTGTGCGGCACGCCCATCGTGCAG
CAATGA
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Coding sequence (CDS) from alignment at tig00000860_pilon:1379618..1380223-

>Ggra9033.t1 ID=Ggra9033.t1|Name=Ggra9033.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=495bp|location=Sequence derived from alignment at tig00000860_pilon:1379618..1380223- (Gracilaria gracilis GNS1m male)
ATGACCGACAGCATGCTGAGCTGCCTGCTGCCGGTGGCCATCTTCGCGGT
GGCGCACGCGACTCTGCTGCTCTGCGCGGTGGGCGTATGGAGCTGTCACG
CGGCGTACCTGGGCGTCAAGCTGGCGGCCAGGCTGATGTTGGCTGTGCGT
ATTGATGGCGACATGCGCGGCGTGCAACGCGCGCTGGGCGCAGTGCTGTC
GGCACTGCAGTGGGCGAGGTCGCTGCTGTGCTTGGCGTGTTCCGTGGTGG
CGCAGTTCTGCATGATGGAGGAGCAGCAGCTGGCGATGGAGCAGTTTTGC
CCGACGTTGAGTGCTTCGCGGGCGGCGGCGTCCGCGCAGCTCAACTGTAC
AATCTGTCTGGACGCGCTGGATGGCGGGCAAAAGGCACGCTATCTCAGGC
ACTGTTCACATAGCTTTCATGCAAAATGCATCGAACAATGGCTTCGCTAC
GCAAATCGATGCCCGCTGTGCGGCACGCCCATCGTGCAGCAATGA
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