Ggra9007.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra9007.t1
Unique NameGgra9007.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length309
Homology
BLAST of Ggra9007.t1 vs. uniprot
Match: A0A2V3IEA3 (RNA pseudouridylate synthase domain-containing protein 1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IEA3_9FLOR)

HSP 1 Score: 228 bits (582), Expect = 5.530e-70
Identity = 134/270 (49.63%), Postives = 172/270 (63.70%), Query Frame = 0
Query:    6 KLAPRQRDDDCAGGGARKA-----PRTATLQVLLYQRGRYVAVCKPPDVRIDGDFKLTVAKLVQHFLQRRHEQPQFCTPYFVHRLDYATSGALLMALSRRAAAFAAKQFETRLVEKSYVALVHGHVSPTIGGVSARIASMG-ADFRMKLSACGRSARTGVRVLSHGTFQGRKVSKLELRPESGRRHQLRLHCALLGAPIVGDATYGACHEAQLF--ERAPERMMLHASTLRVRLPPEQRPLPSRARLRRGDVFDDA---PVAQLRTDDPL 264
            +LAPR+ + D              P    L+VLL+   RY+AVCKP DVRIDGDF+ TV KL   +L++     Q     FVHRLDYATSG +L+ALSR AAA  ++QFE+RLV+KSYVA+VHG +      V AR+A    +DF ++++  GR + T   VL +GTF G KVSK+ L P SGRRHQLR+HCAL+G  IVGDATY +  +   F    AP+RMMLHA+ L VRLPP+   LPSR RLR   V D +   P+ +L+  DPL
Sbjct:    4 RLAPREDEHDXXXXXXXXXXXXXPPVAPQLRVLLHHPARYLAVCKPADVRIDGDFRHTVLKLAHAYLRQSRRGDQLAQVRFVHRLDYATSGVMLLALSRPAAAAVSRQFESRLVQKSYVAIVHGAILRRQFSVHARVADRDKSDFLVRVAPQGRDSFTEGVVLEYGTFNGMKVSKVLLMPRSGRRHQLRVHCALMGHAIVGDATYASSSQHCRFAARNAPKRMMLHAAALEVRLPPQADELPSRRRLRGERVRDISRRWPLHRLQAPDPL 273          
BLAST of Ggra9007.t1 vs. uniprot
Match: A0A7S3EEX3 (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EEX3_9RHOD)

HSP 1 Score: 172 bits (435), Expect = 2.100e-48
Identity = 106/234 (45.30%), Postives = 139/234 (59.40%), Query Frame = 0
Query:    5 VKLAPRQRDDDCAGGGARKAPRTATLQVLLYQRGRYVAVCKPPDVRIDGDFKLTVAKLVQ-HFLQRRHEQPQFCTPYFVHRLDYATSGALLMALSRRAAAFAAKQFETRLVEKSYVALVHGHVSPTIGGVSARIASM-GADFRMKLSAC---GRSARTGVRVLSHGTFQGRKVSKLELRPESGRRHQLRLHCALLGAPIVGDATYGACHEAQLFE-RAPERMMLHASTLRVRLP 232
            V  APR+++ D      RK PR+  + V+    G YV V KP DVR+DG+F +TV KLV+ H  ++     +     FVH+LDYATSG LL+AL+RR+AAF  KQFE R V+K Y+ALV+G + P        IA+  G DFRM +      GRSA T    + +G + G++V+K+ L P SGRRHQLR+H    G PIVGDATY    E    +   P RM LHA  L + LP
Sbjct:    8 VAQAPRKKEGDEVTTRGRKPPRSPEIDVIYEDEG-YVVVNKPADVRMDGEFDVTVEKLVRAHLTKKDATWEKEGKIRFVHQLDYATSGVLLLALTRRSAAFTCKQFERRTVQKKYLALVYGTIPPGTYKYDENIANQPGIDFRMTVGTSANPGRSALTYCTPVGYGEYLGKRVTKVLLEPSSGRRHQLRVHLLTAGFPIVGDATYALDSELGPDDPNTPPRMFLHAWNLLIVLP 240          
BLAST of Ggra9007.t1 vs. uniprot
Match: S0F336 (PseudoU_synth_2 domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=S0F336_CHOCR)

HSP 1 Score: 169 bits (429), Expect = 3.080e-47
Identity = 116/291 (39.86%), Postives = 161/291 (55.33%), Query Frame = 0
Query:    7 LAPRQRDDDCAGGGARKAPRTAT-LQVLLYQRGRYVAVCKPPDVRIDGDFKLTVAKLVQHFLQRRH---EQPQFCTPY---FVHRLDYATSGALLMALSRRAAAFAAKQFETRLVEKSYVALVHGHVSPTIGGVS-------------ARIASMGADFRMKLSACG---RSARTGVRVLSHGTFQGRKVSKLELRPESGRRHQLRLHCALLGAPIVGDATYGACHEAQLFERA---PERMMLHASTLRVRLPPEQRPLPSRARLRRGDVFDDAPVAQLRTDDPLTPQRMRG 271
            + PR+++ D       + P  A  L VL Y+ GRY+   KPPDVRIDG+F  TV KL   ++  +    E+ +  T +   FVHRLDYATSG +++ L+R+AA  AA QFE R V+K Y+ALVHGHV   I  V+             A   +    ++M + + G   R++ T    L+HG+++G  V+KL L P+SGRRHQLR+HCA  G PIVGDATY    ++  F+     P RMMLHA  L + LPP Q  L  R    R  +  +      RT DP + + + G
Sbjct:    9 IRPREKEGDAPPTTPGRLPPVAPKLGVLHYEAGRYLITDKPPDVRIDGEFTHTVEKLALSYIVSQGFDVEKAKTETGFGVRFVHRLDYATSGVMMIGLTRKAAGVAATQFEKRSVKKIYLALVHGHVGDDIEVVTDMDNRKSFLTFDQAIADTKPPGYKMVVGSPGNPGRASLTECYPLAHGSYKGAPVTKLLLVPQSGRRHQLRVHCANAGMPIVGDATY-IDDDSVYFKDPNVLPPRMMLHAFELHISLPPPQEKLYGRKSGLRNAIQQE-----FRTVDPFSEKTLEG 293          
BLAST of Ggra9007.t1 vs. uniprot
Match: A0A5J4YP60 (RNA pseudouridylate synthase domain-containing protein 1 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YP60_PORPP)

HSP 1 Score: 151 bits (382), Expect = 2.860e-40
Identity = 99/238 (41.60%), Postives = 137/238 (57.56%), Query Frame = 0
Query:    7 LAPRQRDDDCAGGGARKAPRTATLQVLLYQRGRYVAVCKPPDVRIDGDFKLTVAKLVQHFLQRRHEQPQFCTPY---FVHRLDYATSGALLMALSRRAAAFAAKQFETRLVEKSYVALVHGHVSPTIGGVSARIASMGADFRMKL---------SACGRSARTGVRVLSHGTFQGRKVSKLELRPESGRRHQLRLHCALLGAPIVGDATYGACHEAQLFE-RAPERMMLHASTLRVRL 231
            +A R R  +     A + P  A    ++Y+   YV V KP DVR+DG+ + TV K V   L+ + ++    +P     VH+LDY+TSG +LMAL+R+AA + A+QFETR  +K+Y+ALV+G V  T   V+  I +    F M+L          +  ++A T V  LS G ++G+  +KL L P +GRRHQLRLHC  LG  I+GDATYG      L + R PERM LHA  L V L
Sbjct:    1 MATRARAHEPVIHTAGRVPPAAPQFSVIYESDTYVCVNKPFDVRVDGEHEHTVDKFVAARLRDKLDEASASSPLKPRLVHQLDYSTSGVMLMALTRQAANYVARQFETRATKKAYLALVYGSVCDTAHVVNRAIGATDG-FEMRLVDETDSDAERSKAKAATTHVYALSEGFYRGQPAAKLLLVPITGRRHQLRLHCQSLGHTIIGDATYGQDSHWPLGDPRNPERMYLHAYMLAVDL 237          
BLAST of Ggra9007.t1 vs. uniprot
Match: M2W3S7 (Ribosomal large subunit pseudouridine synthase A n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2W3S7_GALSU)

HSP 1 Score: 143 bits (361), Expect = 1.780e-37
Identity = 97/201 (48.26%), Postives = 121/201 (60.20%), Query Frame = 0
Query:   33 LLYQRGRYVAVCKPPDVRIDGDFKLTVAKLVQHFLQRRHEQPQFCTPYFVHRLDYATSGALLMALSRRAAAFAAKQFETRLVEKSYVALVHGHVSPTIGGVSARIASMGAD-FRMKLSAC-GRSARTGVRVLSHGTFQGRK-VSKLELRPESGRRHQLRLHCALLGAPIVGDATYGACHEAQLFE-RAPERMMLHASTLRV 229
             LY    Y+AV KP DVR+DGDF +TV KLV   L+   E+     P FVHRLDYATSG L+  L  ++A++ AK F  RLVEK Y+ALVHG        +  RIA+   D F M +SA  G+SA+T    LS G +     V+K+ L+P +GRRHQLR+H    G PIVGDATYG        + R P RMMLHA  L+V
Sbjct:   45 FLYIDEEYLAVNKPADVRMDGDFDVTVTKLVYRKLES--EKGTTRKPRFVHRLDYATSGVLIAGLMDQSASYLAKLFRERLVEKFYLALVHGWTPCKKFVMEERIANHPVDGFMMTVSADRGKSAKTECVPLSFGIYGDHYLVTKVLLKPFTGRRHQLRVHMKYRGFPIVGDATYGVDSVYGPDDVRTPPRMMLHAWKLKV 243          
BLAST of Ggra9007.t1 vs. uniprot
Match: L1IS66 (PseudoU_synth_2 domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IS66_GUITC)

HSP 1 Score: 128 bits (321), Expect = 1.600e-31
Identity = 98/242 (40.50%), Postives = 132/242 (54.55%), Query Frame = 0
Query:    7 LAPRQRDDDCAGG-GARKAPRTATLQVLLYQRGRYVAVCKPPDVRIDGDFKLTVAKLVQHFLQRRHEQPQFCTPYFVHRLDYATSGALLMALSRRAAAFAAKQFETRLVEKSYVALVHGHVS-PTIGGVSA----------RIAS--MGAD----FRMKL---SACGRSARTGVRVLSHGTFQGRKVSKLELRPESGRRHQLRLHCALLGAPIVGDATYGACHEAQLFERAPERMMLHASTL 227
            + PR+ D D       R AP   T   ++++   YV V K  D RI GDF+ TV KL    L + H     C     HRLDYATSGA++ AL+  AAA A+K F  R V K Y+ALV GH+  PT+  + A          R+    +G D    FRMK+   S  G+ ++T ++V+S G   G+K SK+ L+PE+GRRHQLR+H    G PI+GDATY    ++        RMMLHA +L
Sbjct:    1 MVPRKSDRDVVTETNGRNAPPPMTGLNVIHRCDNYVVVDKRYDSRISGDFEHTVEKL----LLQEHAAIFPC-----HRLDYATSGAMIWALNSEAAAKASKCFRRRNVIKLYLALVQGHIEGPTLEDLKASRWHGLQDPYRMLDWPIGPDEEHGFRMKVLIPSQGGKVSQTRMKVVSRGECCGKKASKVILQPETGRRHQLRVHMMKFGHPIIGDATYTDDFQSP-------RMMLHAWSL 226          
BLAST of Ggra9007.t1 vs. uniprot
Match: RNA pseudouridylate synthase domain-containing protein 1-like isoform X1 n=2 Tax=Papilio polytes TaxID=76194 RepID=UPI0006768D6F (RNA pseudouridylate synthase domain-containing protein 1-like isoform X1 n=2 Tax=Papilio polytes TaxID=76194 RepID=UPI0006768D6F)

HSP 1 Score: 126 bits (317), Expect = 5.720e-31
Identity = 84/223 (37.67%), Postives = 123/223 (55.16%), Query Frame = 0
Query:   25 PRTATLQVLLYQRGRYVAVCKPPDVRIDGDFKLTVAKLVQHFLQRRHEQPQFCTP-YFVHRLDYATSGALLMALSRRAAAFAAKQFETRLVEKSYVALVHGHVSPTIGGVSARIAS--MGADFRMKLSA--------CG--RSARTGVRVLSHGTFQGRKVSKLELRPESGRRHQLRLHCALLGAPIVGDATYGACHEAQLFERAPERMMLHASTLRVRLPPE 234
            PR   ++  LYQ   ++ V KP D+ I+ D +     +V H  ++   +     P +FVHRLDY+TSG L MAL++ AAA A + FE RL  K Y+A+V GH+S  +  +   + S     D   K+ A        CG  RSA T + VL  G ++   V+ + L+P +GRRHQLR+HC+++G  I+GD TY    +      +P RM LHA+ L + LP E
Sbjct:    3 PRNMAIE-KLYQSVNFLIVNKPYDMYINSDDENEKNTVVCHIAEQDSHRSNSAQPLHFVHRLDYSTSGVLCMALNKSAAAAAGRLFEKRLTNKYYLAIVRGHLSFKMCDIKYPLGSDRTSPDTSHKMLALTEATRTSCGSPRSAETRLLVLESGYYEDNPVTVVVLKPLTGRRHQLRVHCSVIGHTILGDYTYSNRQDT-----SPHRMFLHATRLVLPLPNE 219          
BLAST of Ggra9007.t1 vs. uniprot
Match: A0A367JJK9 (PseudoU_synth_2 domain-containing protein n=5 Tax=Rhizopus TaxID=4842 RepID=A0A367JJK9_RHIAZ)

HSP 1 Score: 124 bits (311), Expect = 1.210e-30
Identity = 85/209 (40.67%), Postives = 120/209 (57.42%), Query Frame = 0
Query:   33 LLYQRGRYVAVCKPPDVRIDGDFKLTVAKLVQHFLQRRHEQPQFCTPYF--VHRLDYATSGALLMALSRRAAAFAAKQFETRLVEKSYVALVHGHVSPTIGGVSARIAS-MGADFRMKLSACGRSARTGVRVLSHGTFQGRK----------VSKLELRPESGRRHQLRLHCALLGAPIVGDATYGACHEAQLFERAPERMMLHASTLR 228
            ++++   ++ V KP D+RI   +  T    V+  LQ ++      TP F  VH+LDYATSG  ++AL++ AAA AAKQF+ RLV+K+Y+ALV+GH+   +  V   I      DFRM++S  GR A T + VL  G +   +          V+K+ L P SGRRHQLRLH   LG PI+GD  Y    E +  +    RMMLHA ++R
Sbjct:    4 VIHKDNNWLIVNKPYDMRIQS-YNSTDPS-VESILQEKYPN----TPKFRNVHQLDYATSGVYVLALTKSAAALAAKQFQQRLVKKTYLALVNGHMLDDVYMVDQPIEDDPDHDFRMRISPTGRPAETHIHVLQRGYYNYNEDKTGMEKRIPVTKVRLHPISGRRHQLRLHLKYLGHPIIGDYNY----ETEYTDTF--RMMLHAHSIR 200          
BLAST of Ggra9007.t1 vs. uniprot
Match: RNA pseudouridylate synthase domain-containing protein 1-like isoform X2 n=1 Tax=Arvicanthis niloticus TaxID=61156 RepID=UPI0014866A00 (RNA pseudouridylate synthase domain-containing protein 1-like isoform X2 n=1 Tax=Arvicanthis niloticus TaxID=61156 RepID=UPI0014866A00)

HSP 1 Score: 126 bits (316), Expect = 1.230e-30
Identity = 86/211 (40.76%), Postives = 119/211 (56.40%), Query Frame = 0
Query:   33 LLYQRGRYVAVCKPPDVRIDGDF---KLTVAKLVQHFLQRRHEQPQFCTPY-FVHRLDYATSGALLMALSRRAAAFAAKQFETRLVEKSYVALVHGHVSP---TIGGVSARIASMGADFRMKLSACG-----RSARTGVRVLSHGTFQGRKVSKLELRPESGRRHQLRLHCALLGAPIVGDATYGACHEAQLFERAPERMMLHASTLRVRL 231
            ++YQ   ++ V K  D+RID       LT+ K +QH      + P  C  + F H+LD++TSGAL +AL++ AA  A K F+ R V K+Y+ALV GHV     TI     R ++ G    M +         + + T + VL HG + G  VSK+ L+P +GR HQLR+HC+  G PIVGD TYG   +A+  E  P RMMLHA  LR+ L
Sbjct:   11 IVYQSSDFLVVNKHWDLRIDSKTWRETLTLQKQLQHHFPELAD-PDTCYGFRFCHQLDFSTSGALCVALNKAAAGRAYKCFKERRVTKAYLALVRGHVQESQVTINYAIGRNSTEGRTHTMCIEGTHGCENPKPSLTELLVLEHGLYAGDPVSKVLLKPLTGRTHQLRVHCSAFGHPIVGDMTYG---QAEDQEDQPFRMMLHAFYLRLHL 217          
BLAST of Ggra9007.t1 vs. uniprot
Match: RUSD1 (RNA pseudouridylate synthase domain-containing protein 1 n=43 Tax=Tetrapoda TaxID=32523 RepID=RUSD1_MOUSE)

HSP 1 Score: 126 bits (316), Expect = 1.630e-30
Identity = 85/209 (40.67%), Postives = 119/209 (56.94%), Query Frame = 0
Query:   33 LLYQRGRYVAVCKPPDVRIDGDF---KLTVAKLVQHFLQRRHEQPQFCTPY-FVHRLDYATSGALLMALSRRAAAFAAKQFETRLVEKSYVALVHGHVSP---TIGGVSARIASMGADFRMKLSACG-----RSARTGVRVLSHGTFQGRKVSKLELRPESGRRHQLRLHCALLGAPIVGDATYGACHEAQLFERAPERMMLHASTLRV 229
            ++YQ   ++ V K  D+RID       LT+ K ++H      + P  C  + F H+LD++TSGAL +AL++ AA  A K F+ R V K+Y+ALV GHV     TI     R ++ G    M +         + + T + VL HG + G  VSK+ L+P +GR HQLR+HC+ LG PIVGD TYG   +A+  E  P RMMLHA  LR+
Sbjct:   11 IVYQSSDFLVVNKHWDLRIDSKTWRETLTLQKQLRHHFPELAD-PDTCYGFRFCHQLDFSTSGALCVALNKAAAGSAYKCFKERRVTKAYLALVRGHVQESQVTINYAIGRNSTEGRTHTMCIEGTHGCENPKPSLTELLVLEHGLYAGDPVSKVLLKPLTGRTHQLRVHCSALGHPIVGDLTYG---QAEDQEDQPFRMMLHAFYLRI 215          
The following BLAST results are available for this feature:
BLAST of Ggra9007.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IEA35.530e-7049.63RNA pseudouridylate synthase domain-containing pro... [more]
A0A7S3EEX32.100e-4845.30Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
S0F3363.080e-4739.86PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]
A0A5J4YP602.860e-4041.60RNA pseudouridylate synthase domain-containing pro... [more]
M2W3S71.780e-3748.26Ribosomal large subunit pseudouridine synthase A n... [more]
L1IS661.600e-3140.50PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]
RNA pseudouridylate synthase domain-containing protein 1-like isoform X1 n=2 Tax=Papilio polytes TaxID=76194 RepID=UPI0006768D6F5.720e-3137.67RNA pseudouridylate synthase domain-containing pro... [more]
A0A367JJK91.210e-3040.67PseudoU_synth_2 domain-containing protein n=5 Tax=... [more]
RNA pseudouridylate synthase domain-containing protein 1-like isoform X2 n=1 Tax=Arvicanthis niloticus TaxID=61156 RepID=UPI0014866A001.230e-3040.76RNA pseudouridylate synthase domain-containing pro... [more]
RUSD11.630e-3040.67RNA pseudouridylate synthase domain-containing pro... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.2350.10Pseudouridine synthasecoord: 22..244
e-value: 4.6E-48
score: 165.6
NoneNo IPR availablePANTHERPTHR21600MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASEcoord: 32..230
NoneNo IPR availablePANTHERPTHR21600:SF41RNA PSEUDOURIDYLATE SYNTHASE DOMAIN-CONTAINING PROTEIN 1coord: 32..230
IPR006145Pseudouridine synthase, RsuA/RluA-likePFAMPF00849PseudoU_synth_2coord: 40..192
e-value: 1.9E-27
score: 96.3
IPR006145Pseudouridine synthase, RsuA/RluA-likeCDDcd02869PseudoU_synth_RluA_likecoord: 40..228
e-value: 2.33144E-48
score: 157.884
IPR006224Pseudouridine synthase, RluC/RluD, conserved sitePROSITEPS01129PSI_RLUcoord: 82..96
IPR020103Pseudouridine synthase, catalytic domain superfamilySUPERFAMILY55120Pseudouridine synthasecoord: 33..239

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:1129000..1129926 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9007.t1Ggra9007.t1Gracilaria gracilis GNS1m malemRNAtig00000860_pilon 1129000..1129926 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra9007.t1 ID=Ggra9007.t1|Name=Ggra9007.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=309bp
MSAGVKLAPRQRDDDCAGGGARKAPRTATLQVLLYQRGRYVAVCKPPDVR
IDGDFKLTVAKLVQHFLQRRHEQPQFCTPYFVHRLDYATSGALLMALSRR
AAAFAAKQFETRLVEKSYVALVHGHVSPTIGGVSARIASMGADFRMKLSA
CGRSARTGVRVLSHGTFQGRKVSKLELRPESGRRHQLRLHCALLGAPIVG
DATYGACHEAQLFERAPERMMLHASTLRVRLPPEQRPLPSRARLRRGDVF
DDAPVAQLRTDDPLTPQRMRGGGGGALRLADVRAPHRAARLRRSLSAPCM
PRHYSACA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006145PsdUridine_synth_RsuA/RluA
IPR006224PsdUridine_synth_RluC/D_CS
IPR020103PsdUridine_synth_cat_dom_sf