Ggra8982.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8982.t1
Unique NameGgra8982.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length271
Homology
BLAST of Ggra8982.t1 vs. uniprot
Match: A0A2V3IJ70 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IJ70_9FLOR)

HSP 1 Score: 371 bits (952), Expect = 2.870e-127
Identity = 187/259 (72.20%), Postives = 217/259 (83.78%), Query Frame = 0
Query:    1 MDTSRATNARATQAFILATFLSTVGVALFISLLNTIRDSPLSEGVSGIAKSPWAMSALADYIVGASFAALYVYLRDGSPVFCLSNKVFAILFPFVGNFALLWYVAYLIFRARDVTLGLLPYTTDG-GAGPLNMRSEGTSRQSKVIGSVFFGLLMGFAAVCFWASRFESLQEGYSVLKSVTWAAFLFIDNLTGILFTVVFVIVREGELNCVTTLWIISFVLFGNAPTCLYVIHMARQALARDVPFSRVLLSRKKSVSVHS 258
            M+++ A NARATQA+I A FL+TVGVALF+SL+ TIR SPLSEG+SGI +SPWA+SALADY VGA FAALYV+LRDG PVFCLSNKVFA++FPFVGNFALLWYVAYLI +A+DVT GLLP T +  G   ++MRS  T +  K IG  FF LL+ FAAVCFWAS+ +SLQEGY VLK V WA F FIDNLTGILFTVVF+IVREGE+NC+T+LWI+  V FGN PTCLYVIH+A+QA +RDV FSRVLLSR KSVSVHS
Sbjct:    1 MESTTAANARATQAYIFAAFLTTVGVALFMSLVQTIRKSPLSEGISGIGESPWALSALADYFVGACFAALYVFLRDGPPVFCLSNKVFAVVFPFVGNFALLWYVAYLIVKAKDVTRGLLPQTVETPGNVEIDMRSSSTQKHPKTIGVAFFALLLWFAAVCFWASQRQSLQEGYRVLKMVKWAGFTFIDNLTGILFTVVFIIVREGEVNCITSLWILGLVFFGNGPTCLYVIHVAQQAFSRDVSFSRVLLSRSKSVSVHS 259          
BLAST of Ggra8982.t1 vs. uniprot
Match: A0A2V3J599 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J599_9FLOR)

HSP 1 Score: 167 bits (423), Expect = 3.350e-47
Identity = 89/258 (34.50%), Postives = 149/258 (57.75%), Query Frame = 0
Query:    1 MDTSRATNARATQAFILATFLSTVGVALFISLLNTIRDSPLSEGVSGIAKSPWAMSALADYIVGASFAALYVYLRDGSPVFCLSNKVFAILFPFVGNFALLWYVAYLIFRARDVTLGLLPYTTDGGAGPLNMRSEGTSRQSKVIGSVFFGLLMGFAAVCFWASRFESLQEGYSVLKSVT--WAAFLFIDNLTGILFTVVFVIVREGELNCVTTLWIISFVLFGNAPTCLYVIHMARQALARDVPFSRVLLSRKKSVSV 256
            MD++ AT+    + + +A  L     A+  +  +   ++ L      I++S WA+    D   GA FA  Y+++R+G  V C+  K+FA L+PF+ NFALLWYVAY+I   +D+   L+PY+T    G + MR++   R ++++ S+   L      +   A R+ES    ++ L S    W  F + D+L G+LFT +++I REG  +  + LW ++ ++ GNA TC+YV  MA QA++ DVP + VLLS +K++++
Sbjct:    1 MDSTTATSPSLIKTYSIAALLFIASFAVLFAYTSAALETSLLNAPQDISQSGWAVVIFFDASFGAVFAVYYLFVRNGPSVACIPAKLFAFLWPFISNFALLWYVAYMILLHKDLRSALIPYSTAEANGQVPMRTQRNRRTAQIVASIASFLFFVIVVLDINAMRYESFSTAWTKLLSNQNKWITFTYADSLAGLLFTAIYIIEREGGPSPTSVLWAVALLVLGNAVTCVYVFLMALQAISEDVPITHVLLSSRKTIAM 258          
The following BLAST results are available for this feature:
BLAST of Ggra8982.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IJ702.870e-12772.20Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3J5993.350e-4734.50Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 110..142
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..11
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 34..52
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 163..173
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 201..211
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 53..74
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 75..85
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..33
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 231..270
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 212..230
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 86..109
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 174..200
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 143..162
NoneNo IPR availableTMHMMTMhelixcoord: 52..74
NoneNo IPR availableTMHMMTMhelixcoord: 143..165
NoneNo IPR availableTMHMMTMhelixcoord: 87..109
NoneNo IPR availableTMHMMTMhelixcoord: 209..231
NoneNo IPR availableTMHMMTMhelixcoord: 13..32
NoneNo IPR availableTMHMMTMhelixcoord: 177..199

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:1046595..1047407 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8982.t1Ggra8982.t1Gracilaria gracilis GNS1m malemRNAtig00000860_pilon 1046595..1047407 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8982.t1 ID=Ggra8982.t1|Name=Ggra8982.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=271bp
MDTSRATNARATQAFILATFLSTVGVALFISLLNTIRDSPLSEGVSGIAK
SPWAMSALADYIVGASFAALYVYLRDGSPVFCLSNKVFAILFPFVGNFAL
LWYVAYLIFRARDVTLGLLPYTTDGGAGPLNMRSEGTSRQSKVIGSVFFG
LLMGFAAVCFWASRFESLQEGYSVLKSVTWAAFLFIDNLTGILFTVVFVI
VREGELNCVTTLWIISFVLFGNAPTCLYVIHMARQALARDVPFSRVLLSR
KKSVSVHSPRSFDLDSAVNL*
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