Ggra8982.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8982.t1
Unique NameGgra8982.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length271
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:1046595..1047407 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8982Ggra8982Gracilaria gracilis GNS1m malegenetig00000860_pilon 1046595..1047407 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8982.t1.stop1Ggra8982.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 1046595..1046597 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8982.t1.CDS1Ggra8982.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 1046595..1047407 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8982.t1.exon1Ggra8982.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 1046595..1047407 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8982.t1.start1Ggra8982.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 1047405..1047407 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8982.t1Ggra8982.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 1046595..1047407 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8982.t1 ID=Ggra8982.t1|Name=Ggra8982.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=271bp
MDTSRATNARATQAFILATFLSTVGVALFISLLNTIRDSPLSEGVSGIAK
SPWAMSALADYIVGASFAALYVYLRDGSPVFCLSNKVFAILFPFVGNFAL
LWYVAYLIFRARDVTLGLLPYTTDGGAGPLNMRSEGTSRQSKVIGSVFFG
LLMGFAAVCFWASRFESLQEGYSVLKSVTWAAFLFIDNLTGILFTVVFVI
VREGELNCVTTLWIISFVLFGNAPTCLYVIHMARQALARDVPFSRVLLSR
KKSVSVHSPRSFDLDSAVNL*
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spliced messenger RNA

>Ggra8982.t1 ID=Ggra8982.t1|Name=Ggra8982.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=813bp|location=Sequence derived from alignment at tig00000860_pilon:1046595..1047407- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACACGTCTCGAGCAACGAATGCTCGAGCAACTCAAGCATTCATCCT
TGCCACGTTCCTTAGCACGGTCGGAGTGGCTTTGTTTATTTCGTTACTCA
ACACCATTCGAGACAGTCCTCTGTCGGAGGGCGTGTCAGGGATCGCGAAA
TCACCATGGGCAATGTCAGCTCTAGCTGATTATATAGTCGGTGCTTCTTT
TGCTGCTCTCTACGTCTACCTTCGCGATGGATCTCCTGTTTTTTGTCTGT
CGAACAAAGTGTTTGCTATCTTGTTTCCGTTCGTAGGAAATTTTGCTCTG
TTGTGGTACGTTGCGTACCTGATTTTTAGAGCGAGGGATGTGACGCTTGG
TTTGCTACCCTACACTACCGATGGGGGAGCTGGTCCTTTGAACATGCGGT
CAGAAGGCACATCAAGGCAGAGCAAGGTCATCGGCAGCGTATTCTTTGGA
TTACTGATGGGATTTGCCGCGGTTTGCTTCTGGGCATCAAGGTTTGAAAG
CTTGCAGGAAGGATACTCGGTACTCAAGTCGGTGACGTGGGCAGCATTCC
TCTTCATCGACAATTTGACGGGCATTTTATTCACAGTAGTGTTTGTGATT
GTTCGCGAAGGGGAACTGAACTGCGTGACGACGTTATGGATCATTTCGTT
TGTACTGTTCGGGAATGCGCCCACTTGTCTGTACGTAATTCACATGGCAC
GGCAGGCGTTGGCACGAGATGTGCCCTTCTCAAGGGTGCTACTATCAAGG
AAAAAGTCGGTGTCCGTTCATAGTCCCAGATCATTTGATCTGGACAGTGC
AGTGAACCTCTGA
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protein sequence of Ggra8982.t1

>Ggra8982.t1 ID=Ggra8982.t1|Name=Ggra8982.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=271bp
MDTSRATNARATQAFILATFLSTVGVALFISLLNTIRDSPLSEGVSGIAK
SPWAMSALADYIVGASFAALYVYLRDGSPVFCLSNKVFAILFPFVGNFAL
LWYVAYLIFRARDVTLGLLPYTTDGGAGPLNMRSEGTSRQSKVIGSVFFG
LLMGFAAVCFWASRFESLQEGYSVLKSVTWAAFLFIDNLTGILFTVVFVI
VREGELNCVTTLWIISFVLFGNAPTCLYVIHMARQALARDVPFSRVLLSR
KKSVSVHSPRSFDLDSAVNL*
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mRNA from alignment at tig00000860_pilon:1046595..1047407-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8982.t1 ID=Ggra8982.t1|Name=Ggra8982.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=813bp|location=Sequence derived from alignment at tig00000860_pilon:1046595..1047407- (Gracilaria gracilis GNS1m male)
ATGGACACGTCTCGAGCAACGAATGCTCGAGCAACTCAAGCATTCATCCT
TGCCACGTTCCTTAGCACGGTCGGAGTGGCTTTGTTTATTTCGTTACTCA
ACACCATTCGAGACAGTCCTCTGTCGGAGGGCGTGTCAGGGATCGCGAAA
TCACCATGGGCAATGTCAGCTCTAGCTGATTATATAGTCGGTGCTTCTTT
TGCTGCTCTCTACGTCTACCTTCGCGATGGATCTCCTGTTTTTTGTCTGT
CGAACAAAGTGTTTGCTATCTTGTTTCCGTTCGTAGGAAATTTTGCTCTG
TTGTGGTACGTTGCGTACCTGATTTTTAGAGCGAGGGATGTGACGCTTGG
TTTGCTACCCTACACTACCGATGGGGGAGCTGGTCCTTTGAACATGCGGT
CAGAAGGCACATCAAGGCAGAGCAAGGTCATCGGCAGCGTATTCTTTGGA
TTACTGATGGGATTTGCCGCGGTTTGCTTCTGGGCATCAAGGTTTGAAAG
CTTGCAGGAAGGATACTCGGTACTCAAGTCGGTGACGTGGGCAGCATTCC
TCTTCATCGACAATTTGACGGGCATTTTATTCACAGTAGTGTTTGTGATT
GTTCGCGAAGGGGAACTGAACTGCGTGACGACGTTATGGATCATTTCGTT
TGTACTGTTCGGGAATGCGCCCACTTGTCTGTACGTAATTCACATGGCAC
GGCAGGCGTTGGCACGAGATGTGCCCTTCTCAAGGGTGCTACTATCAAGG
AAAAAGTCGGTGTCCGTTCATAGTCCCAGATCATTTGATCTGGACAGTGC
AGTGAACCTCTGA
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Coding sequence (CDS) from alignment at tig00000860_pilon:1046595..1047407-

>Ggra8982.t1 ID=Ggra8982.t1|Name=Ggra8982.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=813bp|location=Sequence derived from alignment at tig00000860_pilon:1046595..1047407- (Gracilaria gracilis GNS1m male)
ATGGACACGTCTCGAGCAACGAATGCTCGAGCAACTCAAGCATTCATCCT
TGCCACGTTCCTTAGCACGGTCGGAGTGGCTTTGTTTATTTCGTTACTCA
ACACCATTCGAGACAGTCCTCTGTCGGAGGGCGTGTCAGGGATCGCGAAA
TCACCATGGGCAATGTCAGCTCTAGCTGATTATATAGTCGGTGCTTCTTT
TGCTGCTCTCTACGTCTACCTTCGCGATGGATCTCCTGTTTTTTGTCTGT
CGAACAAAGTGTTTGCTATCTTGTTTCCGTTCGTAGGAAATTTTGCTCTG
TTGTGGTACGTTGCGTACCTGATTTTTAGAGCGAGGGATGTGACGCTTGG
TTTGCTACCCTACACTACCGATGGGGGAGCTGGTCCTTTGAACATGCGGT
CAGAAGGCACATCAAGGCAGAGCAAGGTCATCGGCAGCGTATTCTTTGGA
TTACTGATGGGATTTGCCGCGGTTTGCTTCTGGGCATCAAGGTTTGAAAG
CTTGCAGGAAGGATACTCGGTACTCAAGTCGGTGACGTGGGCAGCATTCC
TCTTCATCGACAATTTGACGGGCATTTTATTCACAGTAGTGTTTGTGATT
GTTCGCGAAGGGGAACTGAACTGCGTGACGACGTTATGGATCATTTCGTT
TGTACTGTTCGGGAATGCGCCCACTTGTCTGTACGTAATTCACATGGCAC
GGCAGGCGTTGGCACGAGATGTGCCCTTCTCAAGGGTGCTACTATCAAGG
AAAAAGTCGGTGTCCGTTCATAGTCCCAGATCATTTGATCTGGACAGTGC
AGTGAACCTCTGA
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