Ggra8922.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8922.t1
Unique NameGgra8922.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length314
Homology
BLAST of Ggra8922.t1 vs. uniprot
Match: A0A2V3J4H4 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J4H4_9FLOR)

HSP 1 Score: 304 bits (779), Expect = 2.670e-100
Identity = 155/262 (59.16%), Postives = 197/262 (75.19%), Query Frame = 0
Query:   53 TQVDEVAKSSSSESPSNKY------VKVERFMTAAAYGGFVLFAFFLAPGSITDVGEIGRIVNGNLDDVNDLFFAIFCLVGVLSINMAVLLNPGSSAQKRLSTGLFSFAGVFVGFGALGPYLFGREYAPSVYSQDISKGGFFTRLLESRIFSIGTMIFTIWIYTFALGLFTPGTAEVHNAILYSSFVNLERLLSTDRFACVSTLDGILLSVLTLGPLIEDMRRRGWFVTGKMLESFLTALSVVLTPGLGVAFYLILRPRLPR 308
            ++ DE+   +SS S  +K       ++VER  T  A   F ++   LAPGS+TD+GEIGRI++G LD+VNDLFFAIF L+G +S N AVLLNPG+S QK LSTGLFSF GVF GFGALGPYL  REY PSV S++++  G  +R+LESR FS+G +++ +WIY FALG+FTPGT  +H+AI Y++ VNL RL STDRFA VS +D + LS+ T GPL EDMRRRGWF  G++ ES+LTALS+  TPGLGVA YLI+RPRLP+
Sbjct:    4 SRTDEMKTETSSTSTPSKSTSPVPSIRVERVATGVAAAVFAIYGLVLAPGSLTDLGEIGRILSGRLDEVNDLFFAIFNLLGAVSFNFAVLLNPGASRQKLLSTGLFSFLGVFFGFGALGPYLAAREYVPSVSSEEVAAQGITSRVLESRAFSVGLLVYVLWIYAFALGVFTPGTENLHDAIFYAAGVNLFRLFSTDRFASVSVVDLVCLSLATWGPLTEDMRRRGWFAEGRLSESYLTALSIASTPGLGVALYLIMRPRLPK 265          
BLAST of Ggra8922.t1 vs. uniprot
Match: S0F3N9 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=S0F3N9_CHOCR)

HSP 1 Score: 204 bits (519), Expect = 8.410e-62
Identity = 100/207 (48.31%), Postives = 141/207 (68.12%), Query Frame = 0
Query:  107 IVNGNLDDVNDLFFAIFCLVGVLSINMAVLLNPGSSAQKRLSTGLFSFAGVFVGFGALGPYLFGREYAPSVYSQDISKGGFFTRLLESRIFSIGTMIFTIWIYTFALGLFTPGTAEVHNAILYSSFVNLERLLSTDRFACVSTLDGILLSVLTLGPLIEDMRRRGWFVTGKMLESFLTALSVVLTPGLGVAFYLILRPRLPRKGNKS 313
            I++G L+DVND+FFAIF L G  S+ +A LLN G+S QK+L T LFS AG+F+GF + GPYLFGREY P +  +++   G  +R LES+  ++ T+ + +W Y FALG FTPGT + H+ +LY++ V+L R  S DR    + +D ++L+ +  GPL EDM RRGWF  G+ ++S LTAL  +L P LG A YL+LRP LP   ++ 
Sbjct:    2 IISGKLEDVNDVFFAIFNLFGATSVTLAALLNAGASRQKKLRTDLFSIAGLFLGFWSFGPYLFGREYVPKIAREEVYDRGILSRALESKALALATVGYALWAYAFALGFFTPGTLKYHDVLLYATVVDLFRDFSMDRGIFSTCIDFVILNTVIGGPLTEDMSRRGWFREGRNIDSILTALCFLLIPVLGPAVYLLLRPSLPESNSEK 208          
BLAST of Ggra8922.t1 vs. uniprot
Match: A0A0G4EWH0 (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EWH0_VITBC)

HSP 1 Score: 75.1 bits (183), Expect = 1.140e-11
Identity = 82/306 (26.80%), Postives = 134/306 (43.79%), Query Frame = 0
Query:   33 PQNSRQSRELSRHKAQIVNTTQVDEVAKSSSSESP---SNKYVKVERFMTAAAYGGFVLFAFFLAPGSITDVGE--IGRIVNGNLDD-VNDLFFAIFCLVGVLSINMAVLLNPGSSAQ--------------KRLSTGLFSF--AGVFVGFGALGPYLFGREYAPSVYSQDISKGGFFTRLLESRIFSIGTMIFTIWIYTFALGLFTPGTAEVHNA-ILYSSFVNLERLLSTDRFACVSTLDGILLSVLTLGPLIEDMRRRGWFVT-----GKML---ESFLTALSVVLTPGLGVAFYLILRPRLP 307
            P  S  +   + H+A   + T+V    + S++ +P   ++    +   +  A +  F+    FL P    D     I  ++   LD  VN L  A F  +GV+ +  A +L PGS  Q              +R  T L  +     F+G+G +GPY+  REY  SV    +   G+F RLLE +  S   +  ++W+    +G    G         L + + + +    T R    S++D ++L ++ L PLIEDM+RRGW  +     GK +      L   +    P +  + YL+LRP LP
Sbjct:   30 PARSGPASSPTLHRAGASSPTRVSARPQPSAAAAPPATTDTKTLIRTGICFAVWAAFLAVGLFLGPNEAPDKNAELIKGLIASPLDPPVNRLIAAYFNSLGVVPLIYASVLVPGSRDQPVPSWLPVRLPAFLERAGTSLVPYFLLSEFLGYGGIGPYVAIREYRSSVGRSSL---GWFGRLLEFKGTSAAILAASVWLVVSGVGGGLGGLLSGEGLQTLPALWQDYKEAFFTQRLVNASSIDFVILWLVFLDPLIEDMKRRGWGPSVDEQSGKEVWKPSDVLRVGAFWAVPLISPSLYLLLRPPLP 332          
BLAST of Ggra8922.t1 vs. uniprot
Match: A0A1X6NP34 (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NP34_PORUM)

HSP 1 Score: 66.6 bits (161), Expect = 3.970e-9
Identity = 48/126 (38.10%), Postives = 63/126 (50.00%), Query Frame = 0
Query:  190 RLLESRIFSIGTMIFTIWIYTFALGLFTPGTAE--VHNAILYSSFVNLERLLSTDRFACVSTLDGILLSVLTLGPLIEDMRRRGWFVTGKMLESFLTALSVVLTPGLGVAFYLILRPRLPRKGNKS 313
            R+ ES++F+   +   +W Y  A   F P  A     + ILY+  V+   L   D     +T D   +SV   GPL EDMRRR  +  G  +   L ALSVV  P  GVA Y +LRP LPR G + 
Sbjct:  124 RVGESKLFAATLVTGALWCYVTA---FVPLDAPFGAWDLILYARAVDWVELARVDGLVATTTADVGFMSVAIWGPLTEDMRRRRLYDGG--VADVLFALSVVAVPVFGVALYTLLRPPLPRAGERQ 244          
The following BLAST results are available for this feature:
BLAST of Ggra8922.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3J4H42.670e-10059.16Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
S0F3N98.410e-6248.31Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A0G4EWH01.140e-1126.80Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A1X6NP343.970e-938.10Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36009FAMILY NOT NAMEDcoord: 37..309
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 99..117
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 138..148
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 303..313
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 265..283
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 170..195
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 217..243
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 118..137
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 196..216
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 77..98
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..76
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 149..169
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 284..302
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 244..264
NoneNo IPR availableTMHMMTMhelixcoord: 196..218
NoneNo IPR availableTMHMMTMhelixcoord: 244..263
NoneNo IPR availableTMHMMTMhelixcoord: 79..98
NoneNo IPR availableTMHMMTMhelixcoord: 147..169
NoneNo IPR availableTMHMMTMhelixcoord: 118..140
NoneNo IPR availableTMHMMTMhelixcoord: 283..302

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:823267..824208 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8922.t1Ggra8922.t1Gracilaria gracilis GNS1m malemRNAtig00000860_pilon 823267..824208 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8922.t1 ID=Ggra8922.t1|Name=Ggra8922.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=314bp
MTASLIGFTLPLSVSKSRLISTFGFSPTVCVRPQNSRQSRELSRHKAQIV
NTTQVDEVAKSSSSESPSNKYVKVERFMTAAAYGGFVLFAFFLAPGSITD
VGEIGRIVNGNLDDVNDLFFAIFCLVGVLSINMAVLLNPGSSAQKRLSTG
LFSFAGVFVGFGALGPYLFGREYAPSVYSQDISKGGFFTRLLESRIFSIG
TMIFTIWIYTFALGLFTPGTAEVHNAILYSSFVNLERLLSTDRFACVSTL
DGILLSVLTLGPLIEDMRRRGWFVTGKMLESFLTALSVVLTPGLGVAFYL
ILRPRLPRKGNKS*
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