Ggra8922.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8922.t1
Unique NameGgra8922.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length314
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:823267..824208 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005709326.1
PFAMsPLDc_N
Max annot lvl2759|Eukaryota
Evalue2.48e-22
EggNOG OGs28IFV@1|root,2QWFT@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8922Ggra8922Gracilaria gracilis GNS1m malegenetig00000860_pilon 823267..824208 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8922.t1.stop1Ggra8922.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 823267..823269 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8922.t1.CDS1Ggra8922.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 823267..824208 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8922.t1.exon1Ggra8922.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 823267..824208 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8922.t1.start1Ggra8922.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 824206..824208 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8922.t1Ggra8922.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 823267..824208 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8922.t1 ID=Ggra8922.t1|Name=Ggra8922.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=314bp
MTASLIGFTLPLSVSKSRLISTFGFSPTVCVRPQNSRQSRELSRHKAQIV
NTTQVDEVAKSSSSESPSNKYVKVERFMTAAAYGGFVLFAFFLAPGSITD
VGEIGRIVNGNLDDVNDLFFAIFCLVGVLSINMAVLLNPGSSAQKRLSTG
LFSFAGVFVGFGALGPYLFGREYAPSVYSQDISKGGFFTRLLESRIFSIG
TMIFTIWIYTFALGLFTPGTAEVHNAILYSSFVNLERLLSTDRFACVSTL
DGILLSVLTLGPLIEDMRRRGWFVTGKMLESFLTALSVVLTPGLGVAFYL
ILRPRLPRKGNKS*
back to top

spliced messenger RNA

>Ggra8922.t1 ID=Ggra8922.t1|Name=Ggra8922.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=942bp|location=Sequence derived from alignment at tig00000860_pilon:823267..824208- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTGCTTCTCTGATAGGTTTCACGCTTCCCTTGTCTGTGAGCAAAAG
TCGTCTTATTTCGACATTTGGGTTCTCTCCAACGGTTTGCGTTCGGCCTC
AAAACAGCAGGCAGTCCCGTGAATTGAGCAGACATAAAGCACAGATAGTT
AATACAACACAAGTGGATGAAGTCGCAAAAAGCTCTTCTTCTGAGTCTCC
TTCAAACAAGTACGTCAAGGTTGAGCGTTTTATGACGGCAGCCGCCTATG
GTGGCTTTGTTCTATTTGCTTTCTTCCTGGCACCAGGATCTATAACTGAT
GTTGGGGAAATTGGTCGTATCGTCAATGGAAATTTGGATGATGTGAATGA
CCTTTTCTTTGCCATATTCTGTTTGGTGGGAGTACTATCCATCAACATGG
CAGTGTTGTTGAATCCCGGGTCTAGTGCTCAAAAGCGGCTCTCCACAGGA
TTGTTCTCGTTTGCTGGCGTGTTTGTCGGCTTTGGTGCGCTTGGTCCTTA
CCTTTTTGGTCGCGAATATGCTCCTTCTGTCTACTCTCAAGACATTTCCA
AAGGCGGCTTCTTTACCAGACTCCTAGAGTCAAGAATCTTTTCGATTGGA
ACAATGATTTTCACTATATGGATCTACACTTTCGCCCTTGGATTATTCAC
ACCCGGAACAGCAGAAGTTCATAATGCTATTCTCTATTCCTCTTTCGTGA
ATCTGGAACGCCTGTTGTCAACAGATCGGTTCGCATGCGTTTCGACGCTT
GATGGCATCCTGCTCAGCGTACTAACGCTAGGACCGTTGATAGAAGATAT
GCGGCGACGAGGTTGGTTTGTCACTGGAAAAATGCTTGAGTCGTTCTTGA
CGGCGCTTTCTGTCGTATTAACCCCTGGTCTCGGGGTCGCTTTTTATCTC
ATTCTAAGACCACGCTTACCTAGAAAAGGCAATAAAAGTTAA
back to top

protein sequence of Ggra8922.t1

>Ggra8922.t1 ID=Ggra8922.t1|Name=Ggra8922.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=314bp
MTASLIGFTLPLSVSKSRLISTFGFSPTVCVRPQNSRQSRELSRHKAQIV
NTTQVDEVAKSSSSESPSNKYVKVERFMTAAAYGGFVLFAFFLAPGSITD
VGEIGRIVNGNLDDVNDLFFAIFCLVGVLSINMAVLLNPGSSAQKRLSTG
LFSFAGVFVGFGALGPYLFGREYAPSVYSQDISKGGFFTRLLESRIFSIG
TMIFTIWIYTFALGLFTPGTAEVHNAILYSSFVNLERLLSTDRFACVSTL
DGILLSVLTLGPLIEDMRRRGWFVTGKMLESFLTALSVVLTPGLGVAFYL
ILRPRLPRKGNKS*
back to top

mRNA from alignment at tig00000860_pilon:823267..824208-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8922.t1 ID=Ggra8922.t1|Name=Ggra8922.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=942bp|location=Sequence derived from alignment at tig00000860_pilon:823267..824208- (Gracilaria gracilis GNS1m male)
ATGACTGCTTCTCTGATAGGTTTCACGCTTCCCTTGTCTGTGAGCAAAAG
TCGTCTTATTTCGACATTTGGGTTCTCTCCAACGGTTTGCGTTCGGCCTC
AAAACAGCAGGCAGTCCCGTGAATTGAGCAGACATAAAGCACAGATAGTT
AATACAACACAAGTGGATGAAGTCGCAAAAAGCTCTTCTTCTGAGTCTCC
TTCAAACAAGTACGTCAAGGTTGAGCGTTTTATGACGGCAGCCGCCTATG
GTGGCTTTGTTCTATTTGCTTTCTTCCTGGCACCAGGATCTATAACTGAT
GTTGGGGAAATTGGTCGTATCGTCAATGGAAATTTGGATGATGTGAATGA
CCTTTTCTTTGCCATATTCTGTTTGGTGGGAGTACTATCCATCAACATGG
CAGTGTTGTTGAATCCCGGGTCTAGTGCTCAAAAGCGGCTCTCCACAGGA
TTGTTCTCGTTTGCTGGCGTGTTTGTCGGCTTTGGTGCGCTTGGTCCTTA
CCTTTTTGGTCGCGAATATGCTCCTTCTGTCTACTCTCAAGACATTTCCA
AAGGCGGCTTCTTTACCAGACTCCTAGAGTCAAGAATCTTTTCGATTGGA
ACAATGATTTTCACTATATGGATCTACACTTTCGCCCTTGGATTATTCAC
ACCCGGAACAGCAGAAGTTCATAATGCTATTCTCTATTCCTCTTTCGTGA
ATCTGGAACGCCTGTTGTCAACAGATCGGTTCGCATGCGTTTCGACGCTT
GATGGCATCCTGCTCAGCGTACTAACGCTAGGACCGTTGATAGAAGATAT
GCGGCGACGAGGTTGGTTTGTCACTGGAAAAATGCTTGAGTCGTTCTTGA
CGGCGCTTTCTGTCGTATTAACCCCTGGTCTCGGGGTCGCTTTTTATCTC
ATTCTAAGACCACGCTTACCTAGAAAAGGCAATAAAAGTTAA
back to top

Coding sequence (CDS) from alignment at tig00000860_pilon:823267..824208-

>Ggra8922.t1 ID=Ggra8922.t1|Name=Ggra8922.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=942bp|location=Sequence derived from alignment at tig00000860_pilon:823267..824208- (Gracilaria gracilis GNS1m male)
ATGACTGCTTCTCTGATAGGTTTCACGCTTCCCTTGTCTGTGAGCAAAAG
TCGTCTTATTTCGACATTTGGGTTCTCTCCAACGGTTTGCGTTCGGCCTC
AAAACAGCAGGCAGTCCCGTGAATTGAGCAGACATAAAGCACAGATAGTT
AATACAACACAAGTGGATGAAGTCGCAAAAAGCTCTTCTTCTGAGTCTCC
TTCAAACAAGTACGTCAAGGTTGAGCGTTTTATGACGGCAGCCGCCTATG
GTGGCTTTGTTCTATTTGCTTTCTTCCTGGCACCAGGATCTATAACTGAT
GTTGGGGAAATTGGTCGTATCGTCAATGGAAATTTGGATGATGTGAATGA
CCTTTTCTTTGCCATATTCTGTTTGGTGGGAGTACTATCCATCAACATGG
CAGTGTTGTTGAATCCCGGGTCTAGTGCTCAAAAGCGGCTCTCCACAGGA
TTGTTCTCGTTTGCTGGCGTGTTTGTCGGCTTTGGTGCGCTTGGTCCTTA
CCTTTTTGGTCGCGAATATGCTCCTTCTGTCTACTCTCAAGACATTTCCA
AAGGCGGCTTCTTTACCAGACTCCTAGAGTCAAGAATCTTTTCGATTGGA
ACAATGATTTTCACTATATGGATCTACACTTTCGCCCTTGGATTATTCAC
ACCCGGAACAGCAGAAGTTCATAATGCTATTCTCTATTCCTCTTTCGTGA
ATCTGGAACGCCTGTTGTCAACAGATCGGTTCGCATGCGTTTCGACGCTT
GATGGCATCCTGCTCAGCGTACTAACGCTAGGACCGTTGATAGAAGATAT
GCGGCGACGAGGTTGGTTTGTCACTGGAAAAATGCTTGAGTCGTTCTTGA
CGGCGCTTTCTGTCGTATTAACCCCTGGTCTCGGGGTCGCTTTTTATCTC
ATTCTAAGACCACGCTTACCTAGAAAAGGCAATAAAAGTTAA
back to top