Ggra8918.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8918.t1
Unique NameGgra8918.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length380
Homology
BLAST of Ggra8918.t1 vs. uniprot
Match: A0A2V3IRU6 (DNA-binding protein RHL1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IRU6_9FLOR)

HSP 1 Score: 219 bits (557), Expect = 1.860e-64
Identity = 124/245 (50.61%), Postives = 161/245 (65.71%), Query Frame = 0
Query:   13 EKLEAERRSEVLRKKAYRTVLGSKPPASTQCIPKALEHCDNADITKRNTSRKKKYLFLFPGALELEAGARIGQLDDLNTTNPTLSVEVDGGKIVMSGTLVLPKNALFTLKAGRRRREVKVVDSLDTIIAFSEWKFVRNGFDESEASAVPSTLIQSAESDLWKSEQTKTPVQKDDGDEEDSDDLSDLRPSPKPVRSNPRRNARAKGYVNADMESEELEDSDQDEEEVKDVSKVVEHINLVDDEDDE 257
            EK EAE   E LR +A +T+L   P  +   IPK L+  DNADITKRNTSRKKKYLFLFPGALEL  GARIG+L DLNTTNP LS++V GG IV+ GTLV PKNA  TLKAGR  RE++V D+LDTI+AFSEW FVR+G  ++  S +P  LI++ ++ LWK  + +      D  E D++       S  P RSNPRR  R   Y   D+++  +E++D   E     +K +E I+L+D ++DE
Sbjct:   13 EKTEAEITGERLRSRANKTILSLTPSNAQLPIPKQLQRGDNADITKRNTSRKKKYLFLFPGALELAPGARIGELRDLNTTNPVLSIDVPGGHIVLRGTLVFPKNAFLTLKAGRGCREMRVTDTLDTIVAFSEWMFVRSGRTDTIPSNIPEELIRAEQTSLWKCHRKEKRRLNPDMSENDTESPHANGVSEAPTRSNPRRGVRISNYAERDLDN--VENTDNSNEPSTAEAKPIEQIDLIDSDEDE 255          
BLAST of Ggra8918.t1 vs. uniprot
Match: R7Q6W6 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q6W6_CHOCR)

HSP 1 Score: 110 bits (276), Expect = 5.450e-24
Identity = 64/144 (44.44%), Postives = 85/144 (59.03%), Query Frame = 0
Query:   24 LRKKAYRTVLGSKPP-ASTQCIPKALEHCDNADITKRNTSRKKKYLFLFPGALELEAGARIGQLDDLNTTNPTLSVEVDG-GKIVMSGTLVLPKNALFTLKA-GRRRREVKVVDSLDTIIAFSEWKFVRNGFDESEASAVPSTL 164
            LR +A R +L    P AST     AL  CD ADI KRN +RKKKYLF+FPGA  L  GA +G L  L+T  PTL V+V   G+I + G+LV PKN    +K    +++ V VVD+ +T++ FSEW +V  G  +     +P  L
Sbjct:   27 LRSRAERRLLQKTAPGASTSAASIALRRCDGADIVKRNANRKKKYLFVFPGAASLPPGATVGSLSGLDTRTPTLDVDVPPHGRIRLLGSLVFPKNCFTAVKVPASKKKPVNVVDTFETLVVFSEWAWV--GDPKKNPGGLPEPL 168          
BLAST of Ggra8918.t1 vs. uniprot
Match: C1N762 (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1N762_MICPC)

HSP 1 Score: 65.5 bits (158), Expect = 5.680e-8
Identity = 42/122 (34.43%), Postives = 68/122 (55.74%), Query Frame = 0
Query:   30 RTVLGSKPPASTQCIP-KALEHCDNADITKRNTSRKKKYLFLFPGALELEAGARIGQLDDLNTTNPTLSVEVDG-GKIVMSGTLVLPKNA-LFTLKAGRRRREVKVVDSLDTIIAFSEWKFV 148
            R V  ++P +  + +P K L   D  DI K++++RK +Y+ +FPG L      RIG L  L++ NP L VE  G G++ + GT+V  +    FTL    + R + + D  D++I FS + +V
Sbjct:   35 RMVARARPSSVRELVPSKLLRRSDCKDIHKKSSTRKNRYMTVFPGQLAALREGRIGSLAKLDSQNPVLYVEYAGLGRLKLQGTIVRSRTTRYFTLNVKSKDR-MNLEDWFDSVIIFSRFSWV 155          
BLAST of Ggra8918.t1 vs. uniprot
Match: A0A7S1XFJ5 (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XFJ5_9RHOD)

HSP 1 Score: 59.7 bits (143), Expect = 3.630e-6
Identity = 35/117 (29.91%), Postives = 62/117 (52.99%), Query Frame = 0
Query:   47 ALEHCDNADITKRNTSRKKKYLFLFPGALELEAGA------------RIGQLDDLNTTNPTLSVEVD--GGKIVMSGTLVLPKNALFTLKAGRRRREVKVVDSLDTIIAFSEWKFVR 149
            +L + D  DI +RNTSR+ +YL +FPGAL++   A             IG+L++LN+  P L + +D  G ++ + GT+V  +    +++  +    +   D  D ++ F EW+  R
Sbjct:   46 SLNNLDGRDIIRRNTSRRNRYLVIFPGALQVPRSAASSTASKDRERLEIGRLENLNSKTPRLILGLDHNGSQVELRGTMVRLRRPFLSMR--QTSAGLICEDVFDMVLIFPEWRMNR 160          
The following BLAST results are available for this feature:
BLAST of Ggra8918.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3IRU61.860e-6450.61DNA-binding protein RHL1 n=1 Tax=Gracilariopsis ch... [more]
R7Q6W65.450e-2444.44Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
C1N7625.680e-834.43Predicted protein n=1 Tax=Micromonas pusilla (stra... [more]
A0A7S1XFJ53.630e-629.91Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 270..291
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 313..330
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 266..379
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 355..379
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 170..241
IPR038859DNA-binding protein RHL1PANTHERPTHR35698DNA-BINDING PROTEIN RHL1coord: 5..145

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:805003..806142 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8918.t1Ggra8918.t1Gracilaria gracilis GNS1m malemRNAtig00000860_pilon 805003..806142 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8918.t1 ID=Ggra8918.t1|Name=Ggra8918.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=380bp
MRPKSKRGEETNEKLEAERRSEVLRKKAYRTVLGSKPPASTQCIPKALEH
CDNADITKRNTSRKKKYLFLFPGALELEAGARIGQLDDLNTTNPTLSVEV
DGGKIVMSGTLVLPKNALFTLKAGRRRREVKVVDSLDTIIAFSEWKFVRN
GFDESEASAVPSTLIQSAESDLWKSEQTKTPVQKDDGDEEDSDDLSDLRP
SPKPVRSNPRRNARAKGYVNADMESEELEDSDQDEEEVKDVSKVVEHINL
VDDEDDEMKHTEISLQQKRATNRRKTWTQTCFNNMGRGTSNRGRSRGGRG
RLKRLAAKDKDDDADDADADDDDDDEVEIVENMNIGPGRSSGRKRKKVTY
TQSDDELADNDDDDDDFGLSSSSEDDDDV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038859RHL1