Ggra8918.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8918.t1
Unique NameGgra8918.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length380
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:805003..806142 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog88036.EFJ28076
Max annot lvl35493|Streptophyta
GOsGO:0000902,GO:0000904,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006725,GO:0006807,GO:0007049,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009653,GO:0009888,GO:0009987,GO:0010015,GO:0010053,GO:0010054,GO:0016043,GO:0021700,GO:0022402,GO:0022622,GO:0030154,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032989,GO:0034641,GO:0034645,GO:0042023,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044786,GO:0046483,GO:0048364,GO:0048468,GO:0048469,GO:0048731,GO:0048764,GO:0048765,GO:0048766,GO:0048856,GO:0048869,GO:0070013,GO:0071695,GO:0071704,GO:0071840,GO:0090304,GO:0090558,GO:0090627,GO:0097159,GO:0099402,GO:1901360,GO:1901363,GO:1901576,GO:1905392
Evalue4.45e-14
EggNOG OGs28NXV@1|root,2QVIA@2759|Eukaryota,37PNE@33090|Viridiplantae,3GDM2@35493|Streptophyta
DescriptionDNA-binding protein RHL1
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8918Ggra8918Gracilaria gracilis GNS1m malegenetig00000860_pilon 805003..806142 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8918.t1.start1Ggra8918.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 805003..805005 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8918.t1.CDS1Ggra8918.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 805003..806142 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8918.t1.exon1Ggra8918.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 805003..806142 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8918.t1.stop1Ggra8918.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 806140..806142 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8918.t1Ggra8918.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 805003..806142 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8918.t1 ID=Ggra8918.t1|Name=Ggra8918.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=380bp
MRPKSKRGEETNEKLEAERRSEVLRKKAYRTVLGSKPPASTQCIPKALEH
CDNADITKRNTSRKKKYLFLFPGALELEAGARIGQLDDLNTTNPTLSVEV
DGGKIVMSGTLVLPKNALFTLKAGRRRREVKVVDSLDTIIAFSEWKFVRN
GFDESEASAVPSTLIQSAESDLWKSEQTKTPVQKDDGDEEDSDDLSDLRP
SPKPVRSNPRRNARAKGYVNADMESEELEDSDQDEEEVKDVSKVVEHINL
VDDEDDEMKHTEISLQQKRATNRRKTWTQTCFNNMGRGTSNRGRSRGGRG
RLKRLAAKDKDDDADDADADDDDDDEVEIVENMNIGPGRSSGRKRKKVTY
TQSDDELADNDDDDDDFGLSSSSEDDDDV*
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spliced messenger RNA

>Ggra8918.t1 ID=Ggra8918.t1|Name=Ggra8918.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1140bp|location=Sequence derived from alignment at tig00000860_pilon:805003..806142+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCCCGAAATCAAAGCGCGGCGAGGAGACAAATGAGAAGCTTGAAGC
CGAAAGGAGAAGTGAAGTATTACGGAAGAAGGCGTACAGGACTGTTTTAG
GTTCGAAACCACCAGCGTCAACACAATGCATTCCAAAGGCTCTTGAGCAC
TGTGACAATGCGGACATAACCAAGCGAAACACATCTCGCAAGAAGAAGTA
CTTGTTTTTGTTTCCTGGCGCGCTTGAATTAGAGGCTGGGGCTCGAATCG
GGCAACTTGATGACCTGAATACGACAAACCCGACCTTATCTGTCGAAGTT
GATGGCGGCAAGATCGTGATGAGTGGCACTTTGGTTTTACCGAAGAATGC
ACTATTTACTTTAAAGGCGGGAAGGCGACGAAGGGAGGTTAAGGTTGTGG
ATAGTTTGGATACGATTATAGCGTTTTCAGAGTGGAAGTTTGTAAGGAAT
GGATTTGATGAGTCTGAAGCAAGTGCGGTGCCAAGCACTTTAATCCAAAG
CGCGGAAAGTGATTTGTGGAAGTCAGAACAGACGAAGACTCCCGTTCAAA
AGGATGATGGCGACGAGGAAGACAGTGATGATTTGAGCGATCTGCGACCT
TCTCCAAAGCCTGTGAGAAGCAATCCGAGACGCAACGCGAGGGCTAAGGG
ATATGTCAACGCAGATATGGAAAGTGAGGAGCTTGAGGACAGCGATCAGG
ATGAAGAGGAAGTGAAGGACGTAAGCAAAGTCGTTGAACACATAAACTTG
GTCGACGACGAAGACGATGAGATGAAGCACACAGAAATTTCTTTACAACA
AAAGCGCGCTACGAATCGAAGAAAAACATGGACACAAACATGCTTTAATA
ATATGGGACGCGGGACGTCGAACAGAGGTAGATCTCGCGGGGGGCGTGGA
CGGTTGAAACGGCTTGCGGCCAAAGACAAGgatgatgatgctgatgatgc
tgatgctgatgatgatgatgatgatgaGGTTGAGATAGTGGAAAACATGA
ATATTGGTCCGGGAAGAAGTAGTGGGCGCAAACGGAAGAAAGTAACGTAC
ACTCAGTCGGACGACGAGCTTGCTGATAACGACGACGATGACGATGACTT
TGGTTTGAGCTCTAGCTCCGAGGACGATGATGACGTGTGA
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protein sequence of Ggra8918.t1

>Ggra8918.t1 ID=Ggra8918.t1|Name=Ggra8918.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=380bp
MRPKSKRGEETNEKLEAERRSEVLRKKAYRTVLGSKPPASTQCIPKALEH
CDNADITKRNTSRKKKYLFLFPGALELEAGARIGQLDDLNTTNPTLSVEV
DGGKIVMSGTLVLPKNALFTLKAGRRRREVKVVDSLDTIIAFSEWKFVRN
GFDESEASAVPSTLIQSAESDLWKSEQTKTPVQKDDGDEEDSDDLSDLRP
SPKPVRSNPRRNARAKGYVNADMESEELEDSDQDEEEVKDVSKVVEHINL
VDDEDDEMKHTEISLQQKRATNRRKTWTQTCFNNMGRGTSNRGRSRGGRG
RLKRLAAKDKDDDADDADADDDDDDEVEIVENMNIGPGRSSGRKRKKVTY
TQSDDELADNDDDDDDFGLSSSSEDDDDV*
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mRNA from alignment at tig00000860_pilon:805003..806142+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8918.t1 ID=Ggra8918.t1|Name=Ggra8918.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1140bp|location=Sequence derived from alignment at tig00000860_pilon:805003..806142+ (Gracilaria gracilis GNS1m male)
ATGCGCCCGAAATCAAAGCGCGGCGAGGAGACAAATGAGAAGCTTGAAGC
CGAAAGGAGAAGTGAAGTATTACGGAAGAAGGCGTACAGGACTGTTTTAG
GTTCGAAACCACCAGCGTCAACACAATGCATTCCAAAGGCTCTTGAGCAC
TGTGACAATGCGGACATAACCAAGCGAAACACATCTCGCAAGAAGAAGTA
CTTGTTTTTGTTTCCTGGCGCGCTTGAATTAGAGGCTGGGGCTCGAATCG
GGCAACTTGATGACCTGAATACGACAAACCCGACCTTATCTGTCGAAGTT
GATGGCGGCAAGATCGTGATGAGTGGCACTTTGGTTTTACCGAAGAATGC
ACTATTTACTTTAAAGGCGGGAAGGCGACGAAGGGAGGTTAAGGTTGTGG
ATAGTTTGGATACGATTATAGCGTTTTCAGAGTGGAAGTTTGTAAGGAAT
GGATTTGATGAGTCTGAAGCAAGTGCGGTGCCAAGCACTTTAATCCAAAG
CGCGGAAAGTGATTTGTGGAAGTCAGAACAGACGAAGACTCCCGTTCAAA
AGGATGATGGCGACGAGGAAGACAGTGATGATTTGAGCGATCTGCGACCT
TCTCCAAAGCCTGTGAGAAGCAATCCGAGACGCAACGCGAGGGCTAAGGG
ATATGTCAACGCAGATATGGAAAGTGAGGAGCTTGAGGACAGCGATCAGG
ATGAAGAGGAAGTGAAGGACGTAAGCAAAGTCGTTGAACACATAAACTTG
GTCGACGACGAAGACGATGAGATGAAGCACACAGAAATTTCTTTACAACA
AAAGCGCGCTACGAATCGAAGAAAAACATGGACACAAACATGCTTTAATA
ATATGGGACGCGGGACGTCGAACAGAGGTAGATCTCGCGGGGGGCGTGGA
CGGTTGAAACGGCTTGCGGCCAAAGACAAGgatgatgatgctgatgatgc
tgatgctgatgatgatgatgatgatgaGGTTGAGATAGTGGAAAACATGA
ATATTGGTCCGGGAAGAAGTAGTGGGCGCAAACGGAAGAAAGTAACGTAC
ACTCAGTCGGACGACGAGCTTGCTGATAACGACGACGATGACGATGACTT
TGGTTTGAGCTCTAGCTCCGAGGACGATGATGACGTGTGA
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Coding sequence (CDS) from alignment at tig00000860_pilon:805003..806142+

>Ggra8918.t1 ID=Ggra8918.t1|Name=Ggra8918.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1140bp|location=Sequence derived from alignment at tig00000860_pilon:805003..806142+ (Gracilaria gracilis GNS1m male)
ATGCGCCCGAAATCAAAGCGCGGCGAGGAGACAAATGAGAAGCTTGAAGC
CGAAAGGAGAAGTGAAGTATTACGGAAGAAGGCGTACAGGACTGTTTTAG
GTTCGAAACCACCAGCGTCAACACAATGCATTCCAAAGGCTCTTGAGCAC
TGTGACAATGCGGACATAACCAAGCGAAACACATCTCGCAAGAAGAAGTA
CTTGTTTTTGTTTCCTGGCGCGCTTGAATTAGAGGCTGGGGCTCGAATCG
GGCAACTTGATGACCTGAATACGACAAACCCGACCTTATCTGTCGAAGTT
GATGGCGGCAAGATCGTGATGAGTGGCACTTTGGTTTTACCGAAGAATGC
ACTATTTACTTTAAAGGCGGGAAGGCGACGAAGGGAGGTTAAGGTTGTGG
ATAGTTTGGATACGATTATAGCGTTTTCAGAGTGGAAGTTTGTAAGGAAT
GGATTTGATGAGTCTGAAGCAAGTGCGGTGCCAAGCACTTTAATCCAAAG
CGCGGAAAGTGATTTGTGGAAGTCAGAACAGACGAAGACTCCCGTTCAAA
AGGATGATGGCGACGAGGAAGACAGTGATGATTTGAGCGATCTGCGACCT
TCTCCAAAGCCTGTGAGAAGCAATCCGAGACGCAACGCGAGGGCTAAGGG
ATATGTCAACGCAGATATGGAAAGTGAGGAGCTTGAGGACAGCGATCAGG
ATGAAGAGGAAGTGAAGGACGTAAGCAAAGTCGTTGAACACATAAACTTG
GTCGACGACGAAGACGATGAGATGAAGCACACAGAAATTTCTTTACAACA
AAAGCGCGCTACGAATCGAAGAAAAACATGGACACAAACATGCTTTAATA
ATATGGGACGCGGGACGTCGAACAGAGGTAGATCTCGCGGGGGGCGTGGA
CGGTTGAAACGGCTTGCGGCCAAAGACAAGgatgatgatgctgatgatgc
tgatgctgatgatgatgatgatgatgaGGTTGAGATAGTGGAAAACATGA
ATATTGGTCCGGGAAGAAGTAGTGGGCGCAAACGGAAGAAAGTAACGTAC
ACTCAGTCGGACGACGAGCTTGCTGATAACGACGACGATGACGATGACTT
TGGTTTGAGCTCTAGCTCCGAGGACGATGATGACGTGTGA
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