Ggra8914.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8914.t1
Unique NameGgra8914.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length133
Homology
BLAST of Ggra8914.t1 vs. uniprot
Match: A0A2V3J5M7 (NFACT-R_1 domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5M7_9FLOR)

HSP 1 Score: 219 bits (559), Expect = 7.820e-72
Identity = 106/132 (80.30%), Postives = 119/132 (90.15%), Query Frame = 0
Query:    1 MKSVTTSEDNLLVRIGDNANENDTLWRGAKQNDLWFHLDGMSSPHAVLSVPGKKKTKAQLSEAIHECAQLVKYFSKAREMAQVTVMYIEAKWVSADPSGKAGSVILKKEPTRMKVVFDERCIAFYLAQMKKK 132
            MKS+ +S D LL+R+G+ A ENDTLWRGAKQNDLWFH DGMSSPH VLSVPGKKK +AQLS+AIHEC QLVKY+SKAR+MAQVTVMYIEAKWVSADPSGKAGSVILKK+P R KVVFDERC+ F LAQ+K+K
Sbjct:    1 MKSLNSS-DGLLIRVGETAAENDTLWRGAKQNDLWFHADGMSSPHVVLSVPGKKKKEAQLSDAIHECTQLVKYYSKARDMAQVTVMYIEAKWVSADPSGKAGSVILKKDPRRTKVVFDERCMEFMLAQLKRK 131          
BLAST of Ggra8914.t1 vs. uniprot
Match: S0F396 (NFACT-R_1 domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=S0F396_CHOCR)

HSP 1 Score: 124 bits (310), Expect = 6.550e-34
Identity = 68/129 (52.71%), Postives = 85/129 (65.89%), Query Frame = 0
Query:    6 TSEDNLLVRIGDNANENDTLWRGAKQNDLWFHLDGMSSPHAVLSVPGKKKTKAQ-LSEAIHECAQLVKYFSKAREMAQVTVMYIEAKWVSADP-SGKAGSVILKKEPTRMKVVFDERCIAFYLAQMKKK 132
            TS D L +R+G+NA EN  L + AKQNDLWFHL+G SSPHA+LSV G K+ K   L  ++HEC QLVK+FS ARE    +V++IEAKWVS +    K G+V LKK P R  VV D   I    A  K++
Sbjct:    5 TSCDGLSIRVGENAAENQRLCKQAKQNDLWFHLEGQSSPHAILSVGGGKQGKNNALRSSLHECQQLVKHFSSAREARCASVIWIEAKWVSKNGVEDKVGAVTLKKTPKRTSVVADAGTIESLTAAKKRE 133          
BLAST of Ggra8914.t1 vs. uniprot
Match: A0A7J7IC17 (NFACT-R_1 domain-containing protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IC17_9RHOD)

HSP 1 Score: 92.4 bits (228), Expect = 1.090e-21
Identity = 52/108 (48.15%), Postives = 68/108 (62.96%), Query Frame = 0
Query:    9 DNLLVRIGDNANENDTLWRGAKQNDLWFHLDGMSSPHAVLSVPGKKKTKAQLSEAIHECAQLVKYFSKAREMAQVTVMYIEAKWVSADP---SGKAGSVILKKEPTRM 113
            D L  R+G+NA EN  L R A+QND WFHL+ + SPH +L  PG+  T+    EA+  CAQLVK  SK R + ++TV+Y+ AK+VS        K GSV L KEP R+
Sbjct:    9 DGLRARLGENAAENQMLCRQARQNDWWFHLESLPSPHCLLENPGEAWTEPP-REAVLACAQLVKERSKWRHVHRITVIYLPAKYVSRRHLAIDDKPGSVTLLKEPKRV 115          
BLAST of Ggra8914.t1 vs. uniprot
Match: M1V6G6 (NFACT-R_1 domain-containing protein n=2 Tax=cellular organisms TaxID=131567 RepID=M1V6G6_CYAM1)

HSP 1 Score: 90.5 bits (223), Expect = 6.200e-21
Identity = 51/106 (48.11%), Postives = 66/106 (62.26%), Query Frame = 0
Query:   11 LLVRIGDNANENDTLWRGAKQNDLWFHLDGMSSPHAVLSVPGKKKTKAQLSEAIHECAQLVKYFSKAREMAQVTVMYIEAKWVSA---DPSGKAGSVILKKEPTRM 113
            L  R+G+NA EN  L R A+QND WFHL+ + SPH VL  P     +    EA+  CAQLVK  SK R++ +VTV+Y+ AK+VS        K GSV+L KEP R+
Sbjct:   11 LRARVGENALENQALCRSARQNDWWFHLESLPSPHCVLENPNGAWREPP-REAVLACAQLVKERSKWRQVHRVTVIYLPAKYVSRRHLQSDEKPGSVVLLKEPRRV 115          
BLAST of Ggra8914.t1 vs. uniprot
Match: A0A6A5C0H0 (NFACT-R_1 domain-containing protein n=1 Tax=Naegleria fowleri TaxID=5763 RepID=A0A6A5C0H0_NAEFO)

HSP 1 Score: 83.2 bits (204), Expect = 6.240e-18
Identity = 41/88 (46.59%), Postives = 55/88 (62.50%), Query Frame = 0
Query:    6 TSEDNLLVRIGDNANENDTLWRGAKQNDLWFHLDGMSSPHAVLSVPGKKKTKAQLSEAIHECAQLVKYFSKAREMAQVTVMYIEAKWV 93
            +S+   L+ +G+NA ENDT+ R A QNDLWFHL  +SSPH +LS   +  T +  SE+IH+ A L K FSK + M    V+Y   K V
Sbjct:    7 SSDQLYLITVGENAKENDTIRRQAAQNDLWFHLQDVSSPHVILSPVDRSLTTSFSSESIHQAASLCKAFSKQKSMQTSNVIYTPRKQV 94          
BLAST of Ggra8914.t1 vs. uniprot
Match: D2VTE8 (Predicted protein n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2VTE8_NAEGR)

HSP 1 Score: 68.9 bits (167), Expect = 2.250e-12
Identity = 40/115 (34.78%), Postives = 62/115 (53.91%), Query Frame = 0
Query:    6 TSEDNLLVRIGDNANENDTLWRGAKQNDLWFHLDGMSSPHAVLSVPGKKKTKAQL-SEAIHECAQLVKYFSKAREMAQVTVMYIEAKWVSADPSGKAGSVILKKEPTRMKVVFDE 119
            TS++  L+ +G+NA END + + A QNDLWFHL+ +SSPH +L       + +   ++AI+    L K +SK +     +V+Y   K V        G V +K    +MKV  D+
Sbjct:    7 TSDNQYLIIVGENAKENDKIRQEASQNDLWFHLEDVSSPHVILKPNNSSSSSSSFPAQAIYYAGVLCKAYSKQKATQTSSVIYAPRKSVKTVKEID-GRVEVKGHVEKMKVYRDD 120          
BLAST of Ggra8914.t1 vs. uniprot
Match: A0A7D3UUG3 (DUF814 protein n=1 Tax=Fadolivirus 1 TaxID=2740746 RepID=A0A7D3UUG3_9VIRU)

HSP 1 Score: 65.1 bits (157), Expect = 4.360e-11
Identity = 45/115 (39.13%), Postives = 60/115 (52.17%), Query Frame = 0
Query:    1 MKSVTTSEDNLLVRIGDNANENDTLWRGAKQNDLWFHLDGMSSPHAVLSVPGKKKTKAQLSEAIHECAQLVKYFSKAREMAQVTVMYIEAKWVSADPSGKAGSVILKKEPTRMKV 115
            +K   T E+NL +RIG NA END +   AKQ DLWFHL  + S H ++S   +     Q+   I  C QL K  +K R++ +V V Y   K V    +   G VILK +   M V
Sbjct:    2 VKEDNTFENNL-IRIGQNAEENDQIISEAKQTDLWFHLANLPSCHIIMSCSNEFPVTKQM---ITYCCQLTKENTKYRDLPKVKVNYTIIKNVKK--TEVKGKVILKGKLNEMTV 110          
BLAST of Ggra8914.t1 vs. uniprot
Match: A0A521D0T1 (Predicted component of the ribosome quality control (RQC) complex, YloA/Tae2 family, contains fibronectin-binding (FbpA) and DUF814 domains n=1 Tax=Aliifodinibius sediminis TaxID=1214077 RepID=A0A521D0T1_9BACT)

HSP 1 Score: 65.5 bits (158), Expect = 8.020e-10
Identity = 35/101 (34.65%), Postives = 51/101 (50.50%), Query Frame = 0
Query:   13 VRIGDNANENDTLWRGAKQNDLWFHLDGMSSPHAVLSVPGKKKTKAQLSEAIHECAQLVKYFSKAREMAQVTVMYIEAKWVSADPSGKAGSVILKKEPTRM 113
            V IG NA  ND L   A + D+W H  G+   H V+ +  +K    +    + + A    Y+SKAR M  V VMY + K+V     G  G+V+L++E   M
Sbjct:  422 VWIGKNAKSNDKLTSLAHKEDIWLHARGVGGSHTVIRMGNRKDYPPK--RVLLQAAAYAAYYSKARGMKSVPVMYTKCKYVRKPKGGAPGAVVLEREEVEM 520          
BLAST of Ggra8914.t1 vs. uniprot
Match: A0A538TU69 (DUF814 domain-containing protein n=1 Tax=Candidatus Eisenbacteria bacterium TaxID=2212470 RepID=A0A538TU69_9BACT)

HSP 1 Score: 62.8 bits (151), Expect = 6.890e-9
Identity = 34/104 (32.69%), Postives = 56/104 (53.85%), Query Frame = 0
Query:    7 SEDNLLVRIGDNANENDTLW-RGAKQNDLWFHLDGMSSPHAVLSVPGKKKTKAQLSEAIHECAQLVKYFSKAREMAQVTVMYIEAKWVSADPSGKAGSVILKKE 109
            + D   V +G N  +ND +  R +  +DLWFH+ G+   H +L  P +  T       + E A +  Y+SKA+++++V V++ E K+VS    GK G  I  +E
Sbjct:  365 TSDGWEVWVGRNNADNDLITHRLSNPHDLWFHVVGVPGSHVILRRPSRHATPKP--RTLEEAAAIAAYYSKAKKLSRVPVIFTERKFVSKPRRGKPGQAICSRE 466          
BLAST of Ggra8914.t1 vs. uniprot
Match: fibronectin-binding domain-containing protein n=1 Tax=Oscillatoria sp. PCC 10802 TaxID=1173028 RepID=UPI0003468A4A (fibronectin-binding domain-containing protein n=1 Tax=Oscillatoria sp. PCC 10802 TaxID=1173028 RepID=UPI0003468A4A)

HSP 1 Score: 59.7 bits (143), Expect = 8.510e-8
Identity = 38/97 (39.18%), Postives = 52/97 (53.61%), Query Frame = 0
Query:   15 IGDNANENDTL-WRGAKQNDLWFHLDGMSSPHAVLSVP-GKKKTKAQLSEAIHECAQLVKYFSKAREMAQVTVMYIEAKWVSADPSGKAGSVILKKE 109
            +G N  +ND L +R A   DLWFH   ++  HA+L +P G    +A L  A    A +  ++S+ARE AQV V+Y E K V      K G V+ K E
Sbjct:  490 VGRNNRQNDILSFRMAGDYDLWFHTQEIAGSHALLRLPAGAAPEEADLQFA----ADVTAHYSRAREAAQVPVVYTEPKHVYKPKGAKPGMVVYKHE 582          
The following BLAST results are available for this feature:
BLAST of Ggra8914.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J5M77.820e-7280.30NFACT-R_1 domain-containing protein n=1 Tax=Gracil... [more]
S0F3966.550e-3452.71NFACT-R_1 domain-containing protein n=1 Tax=Chondr... [more]
A0A7J7IC171.090e-2148.15NFACT-R_1 domain-containing protein n=1 Tax=Cyanid... [more]
M1V6G66.200e-2148.11NFACT-R_1 domain-containing protein n=2 Tax=cellul... [more]
A0A6A5C0H06.240e-1846.59NFACT-R_1 domain-containing protein n=1 Tax=Naegle... [more]
D2VTE82.250e-1234.78Predicted protein n=1 Tax=Naegleria gruberi TaxID=... [more]
A0A7D3UUG34.360e-1139.13DUF814 protein n=1 Tax=Fadolivirus 1 TaxID=2740746... [more]
A0A521D0T18.020e-1034.65Predicted component of the ribosome quality contro... [more]
A0A538TU696.890e-932.69DUF814 domain-containing protein n=1 Tax=Candidatu... [more]
fibronectin-binding domain-containing protein n=1 Tax=Oscillatoria sp. PCC 10802 TaxID=1173028 RepID=UPI0003468A4A8.510e-839.18fibronectin-binding domain-containing protein n=1 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008532NFACT, RNA-binding domainPFAMPF05670NFACT-R_1coord: 6..107
e-value: 2.4E-16
score: 60.3

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:792095..792493 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8914.t1Ggra8914.t1Gracilaria gracilis GNS1m malemRNAtig00000860_pilon 792095..792493 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8914.t1 ID=Ggra8914.t1|Name=Ggra8914.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=133bp
MKSVTTSEDNLLVRIGDNANENDTLWRGAKQNDLWFHLDGMSSPHAVLSV
PGKKKTKAQLSEAIHECAQLVKYFSKAREMAQVTVMYIEAKWVSADPSGK
AGSVILKKEPTRMKVVFDERCIAFYLAQMKKK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008532NFACT_RNA-bd