Ggra8914.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8914.t1
Unique NameGgra8914.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length133
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:792095..792493 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5762.XP_002672593.1
PFAMsDUF814
Max annot lvl2759|Eukaryota
Evalue3.89e-13
EggNOG OGsCOG1293@1|root,2SCHS@2759|Eukaryota
DescriptionDomain of unknown function (DUF814)
COG categoryK
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8914Ggra8914Gracilaria gracilis GNS1m malegenetig00000860_pilon 792095..792493 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8914.t1.start1Ggra8914.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 792095..792097 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8914.t1.CDS1Ggra8914.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 792095..792493 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8914.t1.exon1Ggra8914.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 792095..792493 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8914.t1.stop1Ggra8914.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 792491..792493 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8914.t1Ggra8914.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 792095..792493 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8914.t1 ID=Ggra8914.t1|Name=Ggra8914.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=133bp
MKSVTTSEDNLLVRIGDNANENDTLWRGAKQNDLWFHLDGMSSPHAVLSV
PGKKKTKAQLSEAIHECAQLVKYFSKAREMAQVTVMYIEAKWVSADPSGK
AGSVILKKEPTRMKVVFDERCIAFYLAQMKKK*
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spliced messenger RNA

>Ggra8914.t1 ID=Ggra8914.t1|Name=Ggra8914.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=399bp|location=Sequence derived from alignment at tig00000860_pilon:792095..792493+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGAGCGTAACTACTTCGGAGGACAACCTTCTCGTCCGTATTGGTGA
CAACGCCAATGAAAACGACACGTTATGGCGAGGCGCCAAGCAGAACGACC
TTTGGTTTCACCTGGACGGCATGTCATCTCCTCACGCCGTTCTTTCCGTT
CCAGGAAAAAAGAAGACAAAAGCTCAGCTCAGCGAAGCTATACACGAGTG
CGCGCAACTGGTTAAATATTTCTCAAAGGCACGAGAAATGGCGCAAGTCA
CGGTGATGTACATTGAGGCTAAATGGGTGTCCGCAGACCCGTCTGGAAAG
GCAGGTTCCGTAATTTTGAAGAAGGAGCCTACGAGAATGAAGGTAGTATT
TGATGAGAGATGTATTGCGTTCTATTTGGCGCAGATGAAAAAGAAGTAA
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protein sequence of Ggra8914.t1

>Ggra8914.t1 ID=Ggra8914.t1|Name=Ggra8914.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=133bp
MKSVTTSEDNLLVRIGDNANENDTLWRGAKQNDLWFHLDGMSSPHAVLSV
PGKKKTKAQLSEAIHECAQLVKYFSKAREMAQVTVMYIEAKWVSADPSGK
AGSVILKKEPTRMKVVFDERCIAFYLAQMKKK*
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mRNA from alignment at tig00000860_pilon:792095..792493+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8914.t1 ID=Ggra8914.t1|Name=Ggra8914.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=399bp|location=Sequence derived from alignment at tig00000860_pilon:792095..792493+ (Gracilaria gracilis GNS1m male)
ATGAAGAGCGTAACTACTTCGGAGGACAACCTTCTCGTCCGTATTGGTGA
CAACGCCAATGAAAACGACACGTTATGGCGAGGCGCCAAGCAGAACGACC
TTTGGTTTCACCTGGACGGCATGTCATCTCCTCACGCCGTTCTTTCCGTT
CCAGGAAAAAAGAAGACAAAAGCTCAGCTCAGCGAAGCTATACACGAGTG
CGCGCAACTGGTTAAATATTTCTCAAAGGCACGAGAAATGGCGCAAGTCA
CGGTGATGTACATTGAGGCTAAATGGGTGTCCGCAGACCCGTCTGGAAAG
GCAGGTTCCGTAATTTTGAAGAAGGAGCCTACGAGAATGAAGGTAGTATT
TGATGAGAGATGTATTGCGTTCTATTTGGCGCAGATGAAAAAGAAGTAA
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Coding sequence (CDS) from alignment at tig00000860_pilon:792095..792493+

>Ggra8914.t1 ID=Ggra8914.t1|Name=Ggra8914.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=399bp|location=Sequence derived from alignment at tig00000860_pilon:792095..792493+ (Gracilaria gracilis GNS1m male)
ATGAAGAGCGTAACTACTTCGGAGGACAACCTTCTCGTCCGTATTGGTGA
CAACGCCAATGAAAACGACACGTTATGGCGAGGCGCCAAGCAGAACGACC
TTTGGTTTCACCTGGACGGCATGTCATCTCCTCACGCCGTTCTTTCCGTT
CCAGGAAAAAAGAAGACAAAAGCTCAGCTCAGCGAAGCTATACACGAGTG
CGCGCAACTGGTTAAATATTTCTCAAAGGCACGAGAAATGGCGCAAGTCA
CGGTGATGTACATTGAGGCTAAATGGGTGTCCGCAGACCCGTCTGGAAAG
GCAGGTTCCGTAATTTTGAAGAAGGAGCCTACGAGAATGAAGGTAGTATT
TGATGAGAGATGTATTGCGTTCTATTTGGCGCAGATGAAAAAGAAGTAA
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