Ggra8907.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8907.t1
Unique NameGgra8907.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length778
Homology
BLAST of Ggra8907.t1 vs. uniprot
Match: A0A2V3J4H1 (Myb-like protein I n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J4H1_9FLOR)

HSP 1 Score: 280 bits (716), Expect = 9.700e-79
Identity = 218/445 (48.99%), Postives = 253/445 (56.85%), Query Frame = 0
Query:    1 MADRNAQPSSTSAPDAESSTPKQESKDEPQFQQTSADSLQTGTSQVRNSVLEAIANHQKERISELERNLEKKRATIQRLCAASPLPHSAFPIVPPAAIPAMRAIPTNAPVPSAPSXXXXXXXXXTSVASEGASTNPRPSSHPA----PSSSQPQPAKSAAASNPVMPAPMLGFPP-QPHLPP-YPYIYPPPDPSFAAQYMGAMPPPILHPTQPSHPQPSGHVHQQEKGNDGQEQKQSRYWTPDEHERFLAGMKACGPKNYLQISEFVGTRNAKQVRTHAQKYQKRLEREDAKRRSDMRHGRINNSGAVTSVAADAAAXXXXXXXAAMRGKVPGISTAQGKDSDSTDTPAGPXXXXXXXXXXXXXXXXXXASSAEGSISANTATERHGETSGT-HNHS---AAMAAIAAEAKALGRGVLPSVAIKIPSHAFSSTPQPTMVNKDTGN 435
            MADR    +  SA D  SS P  E K+EP  Q   A+ L   TSQVRNSVLE IA HQ +RI+ELER LEKKRATI+RL AA PLPH A P+VPP          T        +          SV +  AS              P  SQPQ   +  A NP M APM+GFPP QPHL   YPY+                 P +LHP QP   +      Q++K NDG E+KQSRYWTPDEH+RFLAG+KACGPKNYLQISE+VGTRNAKQVRTHAQK+QKR ERE+AK R+DMRHGR   S  + SV A A A XXXXXX             Q KDSDS  T AGP                  ASSAEGS+S NTA ER+ E SG  H +S   AA+AA+AAEA ALGRG LPS A+++    F    +   V +DT +
Sbjct:    1 MADREGDQNDVSAQDCSSSIPNHEPKEEPCEQPPPAEPLPRATSQVRNSVLEEIAAHQAKRITELERTLEKKRATIKRLSAAPPLPHPAIPMVPP----------TXXXXXXVSTGTQNGSAQTASVGAPQASXXXXXXXXXXXSGLPPHSQPQSLPTGGAHNPAMAAPMVGFPPPQPHLAAGYPYMXXXXXXXXXXXXXXXXXPAVLHPLQPPQSRTPRQGAQKDKTNDGSERKQSRYWTPDEHQRFLAGVKACGPKNYLQISEYVGTRNAKQVRTHAQKFQKRREREEAKLRNDMRHGRTEVSP-MASVGAAAKAVXXXXXXXXXXXXXX-XXPPQVKDSDSVGTQAGPSSCSSGKQCHSSNHQSQGASSAEGSVSTNTAAERNAENSGEGHPNSTSAAAVAAVAAEAVALGRGALPSGALQMAPKVFLGVGE--KVQEDTAD 431          
BLAST of Ggra8907.t1 vs. uniprot
Match: R7QDX7 (HTH myb-type domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QDX7_CHOCR)

HSP 1 Score: 129 bits (324), Expect = 3.370e-27
Identity = 117/271 (43.17%), Postives = 141/271 (52.03%), Query Frame = 0
Query:  178 YPYIYPPPDPSFAAQYMGAMPPPILH-PTQPSHPQPSGHVHQQEKGNDGQEQKQSRYWTPDEHERFLAGMKACGPKNYLQISEFVGTRNAKQVRTHAQKYQKRLEREDAKRRSDMRHGRINNSGAVTSVAADAAAXXXXXXXAAMRGKVPGISTAQGKDSDS-------TDTPAGPXXXXXXXXXXXXXXXXXXASSAEGSISA------------NTATERHGET-SGTHNHSAAMAAIAAEAKALGRGVLPSVAIKIPSHAFSSTPQPT 427
            YP+I+ PPD   AA  M  M       PTQP  P  S       +  +G E+KQSRYWT DEH+RFLA +  CGPKNY+QISEFVGTRN KQVRTHAQKYQ++LERE+AKRRS+ R       G+   VA     XXXXXXX  M G VPG + A G   DS       T + +G                    +S+   +S             NTA E      +GT N  AA+AA+AAEA AL  G+L       P HA S+   PT
Sbjct:   20 YPFIFGPPDHIAAASLMNVMSHGTASVPTQPPQPHNSLQTSPPIQRGEG-ERKQSRYWTADEHQRFLAAVSTCGPKNYIQISEFVGTRNPKQVRTHAQKYQQKLEREEAKRRSETRLATGERGGSTVGVAXXXXXXXXXXXX--MNGNVPG-AVAAGVQQDSMRGYGGPTSSSSGKNFSHSDNQDQLRGGISVDGTSSTNDLSGSGSGSGDCFSKRNTANESESPPDNGTSN--AAVAAVAAEAAALRGGILDGG----PFHAESANADPT 280          
BLAST of Ggra8907.t1 vs. uniprot
Match: A0A7S1TD26 (Hypothetical protein (Fragment) n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TD26_9RHOD)

HSP 1 Score: 90.9 bits (224), Expect = 1.870e-15
Identity = 44/63 (69.84%), Postives = 53/63 (84.13%), Query Frame = 0
Query:  226 QEQKQSRYWTPDEHERFLAGMKACGPKNYLQISEFVGTRNAKQVRTHAQKYQKRLEREDAKRR 288
            Q+QKQ+RYWTP+EHERFL G+K  G KNY+ IS+ V TR  KQVRTHAQK+QKRLERE +K+R
Sbjct:  243 QDQKQTRYWTPEEHERFLRGVKLYGDKNYIAISKIVVTRTPKQVRTHAQKFQKRLEREASKKR 305          
BLAST of Ggra8907.t1 vs. uniprot
Match: A0A2V3J5I5 (Myb-like protein I n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5I5_9FLOR)

HSP 1 Score: 81.6 bits (200), Expect = 5.310e-13
Identity = 39/58 (67.24%), Postives = 46/58 (79.31%), Query Frame = 0
Query:  231 SRYWTPDEHERFLAGMKACGPKNYLQISEFVGTRNAKQVRTHAQKYQKRLEREDAKRR 288
            +RYWT  EH++FL  +K  GPKNY+ IS+FVGTR  KQVRTHAQKYQ +LERE  KRR
Sbjct:  146 TRYWTAKEHQQFLYAVKLFGPKNYVAISQFVGTRTPKQVRTHAQKYQMKLEREAKKRR 203          
BLAST of Ggra8907.t1 vs. uniprot
Match: A0A7S1ESP6 (Hypothetical protein (Fragment) n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1ESP6_9RHOD)

HSP 1 Score: 76.3 bits (186), Expect = 1.180e-12
Identity = 35/57 (61.40%), Postives = 45/57 (78.95%), Query Frame = 0
Query:  231 SRYWTPDEHERFLAGMKACGPKNYLQISEFVGTRNAKQVRTHAQKYQKRLEREDAKR 287
            +RYW+  EHERFL G++ CG KNY  ++  VGTRNA+QVRTHAQK++ RL RE A+R
Sbjct:   51 TRYWSRAEHERFLKGIETCGMKNYAAVAVIVGTRNAQQVRTHAQKFEMRLAREAARR 107          
BLAST of Ggra8907.t1 vs. uniprot
Match: A0A7S0BIZ1 (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BIZ1_9RHOD)

HSP 1 Score: 75.5 bits (184), Expect = 3.040e-12
Identity = 37/56 (66.07%), Postives = 40/56 (71.43%), Query Frame = 0
Query:  232 RYWTPDEHERFLAGMKACGPKNYLQISEFVGTRNAKQVRTHAQKYQKRLEREDAKR 287
            RYWT +EH +FL G K  GPKNY  IS  VGTR  KQVRTHAQKY+ RL RE A R
Sbjct:    6 RYWTEEEHRKFLEGRKLYGPKNYAAISAVVGTRTPKQVRTHAQKYEMRLVRESAMR 61          
BLAST of Ggra8907.t1 vs. uniprot
Match: A0A5J4Z933 (Myb-like protein I n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z933_PORPP)

HSP 1 Score: 81.3 bits (199), Expect = 4.240e-12
Identity = 44/84 (52.38%), Postives = 56/84 (66.67%), Query Frame = 0
Query:  210 PQPSGHVHQQEKGNDGQEQ------KQSRYWTPDEHERFLAGMKACGPKNYLQISEFVGTRNAKQVRTHAQKYQKRLEREDAKR 287
            P P+ HV ++ +   G E       KQ+RYWT  EH+RFL      G K Y+ I+E+VG+R+AKQVRTHAQKY KRLERE A+R
Sbjct:  400 PAPTNHVSKETEQEQGAESGQADGAKQTRYWTQAEHDRFLQACAKFGEKAYVSIAEYVGSRSAKQVRTHAQKYAKRLEREHARR 483          
BLAST of Ggra8907.t1 vs. uniprot
Match: A0A7S0BSZ6 (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BSZ6_9RHOD)

HSP 1 Score: 73.9 bits (180), Expect = 6.390e-11
Identity = 38/62 (61.29%), Postives = 44/62 (70.97%), Query Frame = 0
Query:  225 GQEQKQSRYWTPDEHERFLAGMKACGPKNYLQISEFVGTRNAKQVRTHAQKYQKRLEREDAK 286
            G E+KQ RYWT +EH R+L      G KNY  I++ VGTR+AKQVRTH QKY KRLERE  K
Sbjct:   40 GAEKKQPRYWTAEEHRRYLISSAKHGEKNYGPIAKDVGTRSAKQVRTHHQKYLKRLERESTK 101          
BLAST of Ggra8907.t1 vs. uniprot
Match: M2XS22 (Myb domain-containing protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XS22_GALSU)

HSP 1 Score: 76.3 bits (186), Expect = 9.140e-11
Identity = 39/60 (65.00%), Postives = 45/60 (75.00%), Query Frame = 0
Query:  230 QSRYWTPDEHERFLAGMKACGPKNYLQISEFVGTRNAKQVRTHAQKYQKRLEREDAKRRS 289
            QSRYWT DEH+RFL G+   G K+   I+ FVGTRNA QVRTHAQKY  +L RE AKR+S
Sbjct:  189 QSRYWTADEHKRFLEGLARFGHKDMKAIARFVGTRNATQVRTHAQKYYLKLAREAAKRQS 248          
BLAST of Ggra8907.t1 vs. uniprot
Match: A0A7S1T4X8 (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1T4X8_9RHOD)

HSP 1 Score: 72.0 bits (175), Expect = 9.800e-11
Identity = 35/58 (60.34%), Postives = 43/58 (74.14%), Query Frame = 0
Query:  230 QSRYWTPDEHERFLAGMKACGPKNYLQISEFVGTRNAKQVRTHAQKYQKRLEREDAKR 287
            QSRYWTP+EH RF+  ++  GPK+   IS FVGTRN  QVRTHAQKY  RL++E + R
Sbjct:   44 QSRYWTPEEHRRFVQAIQQFGPKDVRAISGFVGTRNPTQVRTHAQKYFLRLQKEQSGR 101          
The following BLAST results are available for this feature:
BLAST of Ggra8907.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J4H19.700e-7948.99Myb-like protein I n=1 Tax=Gracilariopsis chorda T... [more]
R7QDX73.370e-2743.17HTH myb-type domain-containing protein n=1 Tax=Cho... [more]
A0A7S1TD261.870e-1569.84Hypothetical protein (Fragment) n=1 Tax=Compsopogo... [more]
A0A2V3J5I55.310e-1367.24Myb-like protein I n=1 Tax=Gracilariopsis chorda T... [more]
A0A7S1ESP61.180e-1261.40Hypothetical protein (Fragment) n=1 Tax=Timspurcki... [more]
A0A7S0BIZ13.040e-1266.07Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
A0A5J4Z9334.240e-1252.38Myb-like protein I n=1 Tax=Porphyridium purpureum ... [more]
A0A7S0BSZ66.390e-1161.29Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
M2XS229.140e-1165.00Myb domain-containing protein n=1 Tax=Galdieria su... [more]
A0A7S1T4X89.800e-1160.34Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 48..82
NoneNo IPR availableCOILSCoilCoilcoord: 266..286
NoneNo IPR availableGENE3D1.10.10.60coord: 234..280
e-value: 2.6E-11
score: 45.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 440..466
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 416..432
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 220..239
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 467..492
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 716..748
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 109..155
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 266..511
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 548..578
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 762..777
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 164..186
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 274..294
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 84..239
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 615..777
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 628..702
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 331..390
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 562..578
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..52
NoneNo IPR availablePANTHERPTHR12802:SF137MYB-LIKE PROTEIN Icoord: 218..388
NoneNo IPR availablePANTHERPTHR12802SWI/SNF COMPLEX-RELATEDcoord: 218..388
IPR001005SANT/Myb domainSMARTSM00717santcoord: 230..279
e-value: 7.8E-9
score: 45.4
IPR001005SANT/Myb domainCDDcd00167SANTcoord: 234..276
e-value: 2.6548E-8
score: 48.3406
IPR017930Myb domainPFAMPF00249Myb_DNA-bindingcoord: 233..276
e-value: 9.9E-9
score: 35.3
IPR017930Myb domainPROSITEPS51294HTH_MYBcoord: 234..281
score: 15.702028
IPR009057Homeobox-like domain superfamilySUPERFAMILY46689Homeodomain-likecoord: 228..282

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:770371..772704 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8907.t1Ggra8907.t1Gracilaria gracilis GNS1m malemRNAtig00000860_pilon 770371..772704 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8907.t1 ID=Ggra8907.t1|Name=Ggra8907.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=778bp
MADRNAQPSSTSAPDAESSTPKQESKDEPQFQQTSADSLQTGTSQVRNSV
LEAIANHQKERISELERNLEKKRATIQRLCAASPLPHSAFPIVPPAAIPA
MRAIPTNAPVPSAPSNSTPLNQTPTSVASEGASTNPRPSSHPAPSSSQPQ
PAKSAAASNPVMPAPMLGFPPQPHLPPYPYIYPPPDPSFAAQYMGAMPPP
ILHPTQPSHPQPSGHVHQQEKGNDGQEQKQSRYWTPDEHERFLAGMKACG
PKNYLQISEFVGTRNAKQVRTHAQKYQKRLEREDAKRRSDMRHGRINNSG
AVTSVAADAAAAVKAAAAAAMRGKVPGISTAQGKDSDSTDTPAGPSSSSS
GKQCQSSHQHSQGASSAEGSISANTATERHGETSGTHNHSAAMAAIAAEA
KALGRGVLPSVAIKIPSHAFSSTPQPTMVNKDTGNVEDKKSSKASGAIQG
AQPALKQGSSEKSAPSVQKCIDRKEVKQDGDRSDEVAEMADTKGEEFPAV
GDNTKEGKQKECTETIVQSKKNQNPGEEVCASHMAKVKDVQIKTEQLVDN
NSESCQDEQLSGRAKVAKEQSVDMEDSSVVHTRLTKTVAGQVSAEAGTSG
MVDGATTVKHEAEYVDSCTNLTDGRKADGDAAAGRGAGEGEGRETEKVKA
VKQEAHMAGVVETDEGERKSGDGETRSVSGDAYGRRHGAGDESDHEEGQH
EAAGKQTSTALNADSKRDESAAESRKRTRDEEETAGNKRAKTGDGCERKQ
PTAADGGDGGGGQGWQQSNGGNRAAAS*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001005SANT/Myb
IPR017930Myb_dom
IPR009057Homeobox-like_sf