Ggra8907.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra8907.t1
Unique Name	Ggra8907.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	778

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000860_pilon	contig	tig00000860_pilon:770371..772704 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005702978.1
PFAMs	Myb_DNA-binding,RWP-RK
Max annot lvl	2759\|Eukaryota
Evalue	1.54e-11
EggNOG OGs	KOG0724@1\|root,KOG0724@2759\|Eukaryota
Description	ubiquitin modification-dependent histone binding
COG category	K

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra8907	Ggra8907	Gracilaria gracilis GNS1m male	gene	tig00000860_pilon 770371..772704 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8907.t1.stop1	Ggra8907.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000860_pilon 770371..770373 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8907.t1.CDS1	Ggra8907.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000860_pilon 770371..772704 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8907.t1.exon1	Ggra8907.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000860_pilon 770371..772704 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8907.t1.start1	Ggra8907.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000860_pilon 772702..772704 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8907.t1	Ggra8907.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000860_pilon 770371..772704 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000860_pilon:770371..772704-
coding sequence from alignment at tig00000860_pilon:770371..772704-

mRNA sequence

>Ggra8907.t1 ID=Ggra8907.t1|Name=Ggra8907.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=778bp
MADRNAQPSSTSAPDAESSTPKQESKDEPQFQQTSADSLQTGTSQVRNSV
LEAIANHQKERISELERNLEKKRATIQRLCAASPLPHSAFPIVPPAAIPA
MRAIPTNAPVPSAPSNSTPLNQTPTSVASEGASTNPRPSSHPAPSSSQPQ
PAKSAAASNPVMPAPMLGFPPQPHLPPYPYIYPPPDPSFAAQYMGAMPPP
ILHPTQPSHPQPSGHVHQQEKGNDGQEQKQSRYWTPDEHERFLAGMKACG
PKNYLQISEFVGTRNAKQVRTHAQKYQKRLEREDAKRRSDMRHGRINNSG
AVTSVAADAAAAVKAAAAAAMRGKVPGISTAQGKDSDSTDTPAGPSSSSS
GKQCQSSHQHSQGASSAEGSISANTATERHGETSGTHNHSAAMAAIAAEA
KALGRGVLPSVAIKIPSHAFSSTPQPTMVNKDTGNVEDKKSSKASGAIQG
AQPALKQGSSEKSAPSVQKCIDRKEVKQDGDRSDEVAEMADTKGEEFPAV
GDNTKEGKQKECTETIVQSKKNQNPGEEVCASHMAKVKDVQIKTEQLVDN
NSESCQDEQLSGRAKVAKEQSVDMEDSSVVHTRLTKTVAGQVSAEAGTSG
MVDGATTVKHEAEYVDSCTNLTDGRKADGDAAAGRGAGEGEGRETEKVKA
VKQEAHMAGVVETDEGERKSGDGETRSVSGDAYGRRHGAGDESDHEEGQH
EAAGKQTSTALNADSKRDESAAESRKRTRDEEETAGNKRAKTGDGCERKQ
PTAADGGDGGGGQGWQQSNGGNRAAAS*

spliced messenger RNA

>Ggra8907.t1 ID=Ggra8907.t1|Name=Ggra8907.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2334bp|location=Sequence derived from alignment at tig00000860_pilon:770371..772704- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGACCGTAACGCGCAACCAAGCTCCACCTCTGCACCAGATGCCGA
GTCCTCCACTCCAAAGCAAGAGAGCAAAGATGAACCGCAATTTCAACAAA
CCTCCGCAGATTCCCTCCAAACTGGCACATCGCAAGTGCGCAATTCCGTT
CTGGAGGCCATAGCAAACCATCAGAAGGAACGCATTTCGGAGCTGGAGCG
CAACCTGGAGAAAAAACGCGCCACCATACAGCGTCTCTGTGCCGCTTCGC
CACTCCCTCATTCTGCTTTTCCAATTGTTCCCCCAGCTGCAATACCCGCA
ATGCGCGCAATTCCAACAAATGCTCCAGTTCCGTCCGCACCGTCAAACTC
CACGCCGCTCAATCAGACACCCACCTCAGTGGCCTCAGAGGGGGCATCAA
CAAATCCCCGACCGTCATCTCATCCAGCACCTTCAAGTTCTCAACCGCAG
CCTGCAAAGTCGGCAGCTGCATCCAACCCGGTCATGCCAGCGCCCATGCT
TGGTTTCCCTCCACAACCACATCTCCCTCCTTACCCTTACATTTATCCTC
CTCCCGATCCGTCTTTTGCAGCTCAGTACATGGGAGCCATGCCTCCCCCC
ATTCTCCATCCGACCCAACCTTCACACCCCCAACCATCAGGTCATGTACA
TCAGCAAGAGAAGGGGAACGACGGCCAAGAACAGAAACAAAGTAGATACT
GGACCCCCGATGAACATGAGAGATTTCTTGCCGGTATGAAAGCATGCGGG
CCGAAAAACTACCTGCAAATATCCGAGTTTGTCGGCACACGAAACGCAAA
ACAAGTTCGCACCCACGCACAAAAATACCAGAAAAGGTTGGAACGAGAGG
ATGCCAAGCGACGAAGTGATATGCGCCACGGAAGAATAAACAATTCGGGC
GCTGTGACCTCCGTCGCAGCTGACGCAGCAGCGGCAGTCAAAGCGGCGGC
TGCGGCAGCAATGCGCGGAAAAGTTCCTGGCATATCCACTGCACAAGGCA
AAGATTCAGACTCGACCGACACGCCTGCTGGTCCCAGCAGCTCTTCCAGT
GGAAAGCAATGTCAGTCATCGCATCAGCACTCACAAGGGGCCAGTAGTGC
CGAAGGAAGCATAAGCGCGAATACAGCTACAGAGCGCCATGGAGAGACCA
GCGGAACTCACAATCACTCAGCTGCAATGGCTGCAATAGCTGCCGAGGCC
AAAGCGCTGGGACGTGGCGTCCTTCCTTCGGTAGCGATCAAAATACCCTC
TCATGCGTTCAGTAGCACCCCACAGCCGACTATGGTTAACAAGGATACTG
GAAACGTGGAAGACAAGAAATCATCCAAAGCCAGCGGAGCAATACAAGGG
GCACAACCAGCATTGAAACAAGGAAGTTCAGAAAAATCGGCACCATCGGT
TCAGAAGTGTATCGATAGGAAGGAGGTAAAGCAGGACGGGGATAGGAGTG
ATGAAGTTGCGGAGATGGCTGATACCAAAGGTGAGGAGTTTCCGGCAGTT
GGCGACAATACCAAGGAAGGGAAGCAGAAGGAATGTACAGAAACAATTGT
CCAGAGCAAAAAAAATCAAAACCCCGGTGAGGAAGTATGTGCGTCGCACA
TGGCGAAGGTGAAGGATGTCCAGATCAAGACCGAACAACTCGTTGACAAT
AACAGCGAATCATGCCAAGATGAACAGCTATCAGGAAGGGCAAAAGTCGC
AAAAGAGCAAAGTGTTGACATGGAAGACAGTTCCGTTGTACATACGAGAC
TAACAAAAACAGTTGCGGGACAGGTAAGTGCGGAGGCTGGAACTTCTGGA
ATGGTTGACGGAGCGACCACGGTGAAGCACGAAGCCGAGTATGTGGATAG
TTGTACTAACTTAACGGACGGAAGAAAGGCTGATGGTGATGCTGCTGCTG
GCAGAGGTGCGGGTGAAGGGGAAGGGCGAGAAACAGAGAAGGTCAAGGCT
GTGAAACAAGAAGCTCACATGGCGGGTGTAGTAGAGACGGACGAAGGAGA
GCGAAAGTCAGGTGACGGAGAAACACGGAGCGTTAGTGGCGATGCATATG
GGCGAAGACACGGGGCAGGAGATGAAAGCGACCACGAAGAAGGACAACAC
GAGGCTGCCGGAAAGCAAACAAGCACGGCGTTAAACGCGGACAGCAAACG
CGACGAGAGCGCCGCCGAAAGCAGGAAACGCACGCGCGACGAGGAGGAGA
CGGCGGGAAACAAGCGTGCGAAGACGGGCGACGGATGTGAGCGGAAGCAA
CCGACAGCAGCAGACGGAGGAGATGGCGGCGGGGGGCAGGGGTGGCAGCA
GTCAAATGGTGGAAACAGAGCGGCGGCTTCGTAG

protein sequence of Ggra8907.t1

>Ggra8907.t1 ID=Ggra8907.t1|Name=Ggra8907.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=778bp
MADRNAQPSSTSAPDAESSTPKQESKDEPQFQQTSADSLQTGTSQVRNSV
LEAIANHQKERISELERNLEKKRATIQRLCAASPLPHSAFPIVPPAAIPA
MRAIPTNAPVPSAPSNSTPLNQTPTSVASEGASTNPRPSSHPAPSSSQPQ
PAKSAAASNPVMPAPMLGFPPQPHLPPYPYIYPPPDPSFAAQYMGAMPPP
ILHPTQPSHPQPSGHVHQQEKGNDGQEQKQSRYWTPDEHERFLAGMKACG
PKNYLQISEFVGTRNAKQVRTHAQKYQKRLEREDAKRRSDMRHGRINNSG
AVTSVAADAAAAVKAAAAAAMRGKVPGISTAQGKDSDSTDTPAGPSSSSS
GKQCQSSHQHSQGASSAEGSISANTATERHGETSGTHNHSAAMAAIAAEA
KALGRGVLPSVAIKIPSHAFSSTPQPTMVNKDTGNVEDKKSSKASGAIQG
AQPALKQGSSEKSAPSVQKCIDRKEVKQDGDRSDEVAEMADTKGEEFPAV
GDNTKEGKQKECTETIVQSKKNQNPGEEVCASHMAKVKDVQIKTEQLVDN
NSESCQDEQLSGRAKVAKEQSVDMEDSSVVHTRLTKTVAGQVSAEAGTSG
MVDGATTVKHEAEYVDSCTNLTDGRKADGDAAAGRGAGEGEGRETEKVKA
VKQEAHMAGVVETDEGERKSGDGETRSVSGDAYGRRHGAGDESDHEEGQH
EAAGKQTSTALNADSKRDESAAESRKRTRDEEETAGNKRAKTGDGCERKQ
PTAADGGDGGGGQGWQQSNGGNRAAAS*

mRNA from alignment at tig00000860_pilon:770371..772704-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra8907.t1 ID=Ggra8907.t1|Name=Ggra8907.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2334bp|location=Sequence derived from alignment at tig00000860_pilon:770371..772704- (Gracilaria gracilis GNS1m male)
ATGGCCGACCGTAACGCGCAACCAAGCTCCACCTCTGCACCAGATGCCGA
GTCCTCCACTCCAAAGCAAGAGAGCAAAGATGAACCGCAATTTCAACAAA
CCTCCGCAGATTCCCTCCAAACTGGCACATCGCAAGTGCGCAATTCCGTT
CTGGAGGCCATAGCAAACCATCAGAAGGAACGCATTTCGGAGCTGGAGCG
CAACCTGGAGAAAAAACGCGCCACCATACAGCGTCTCTGTGCCGCTTCGC
CACTCCCTCATTCTGCTTTTCCAATTGTTCCCCCAGCTGCAATACCCGCA
ATGCGCGCAATTCCAACAAATGCTCCAGTTCCGTCCGCACCGTCAAACTC
CACGCCGCTCAATCAGACACCCACCTCAGTGGCCTCAGAGGGGGCATCAA
CAAATCCCCGACCGTCATCTCATCCAGCACCTTCAAGTTCTCAACCGCAG
CCTGCAAAGTCGGCAGCTGCATCCAACCCGGTCATGCCAGCGCCCATGCT
TGGTTTCCCTCCACAACCACATCTCCCTCCTTACCCTTACATTTATCCTC
CTCCCGATCCGTCTTTTGCAGCTCAGTACATGGGAGCCATGCCTCCCCCC
ATTCTCCATCCGACCCAACCTTCACACCCCCAACCATCAGGTCATGTACA
TCAGCAAGAGAAGGGGAACGACGGCCAAGAACAGAAACAAAGTAGATACT
GGACCCCCGATGAACATGAGAGATTTCTTGCCGGTATGAAAGCATGCGGG
CCGAAAAACTACCTGCAAATATCCGAGTTTGTCGGCACACGAAACGCAAA
ACAAGTTCGCACCCACGCACAAAAATACCAGAAAAGGTTGGAACGAGAGG
ATGCCAAGCGACGAAGTGATATGCGCCACGGAAGAATAAACAATTCGGGC
GCTGTGACCTCCGTCGCAGCTGACGCAGCAGCGGCAGTCAAAGCGGCGGC
TGCGGCAGCAATGCGCGGAAAAGTTCCTGGCATATCCACTGCACAAGGCA
AAGATTCAGACTCGACCGACACGCCTGCTGGTCCCAGCAGCTCTTCCAGT
GGAAAGCAATGTCAGTCATCGCATCAGCACTCACAAGGGGCCAGTAGTGC
CGAAGGAAGCATAAGCGCGAATACAGCTACAGAGCGCCATGGAGAGACCA
GCGGAACTCACAATCACTCAGCTGCAATGGCTGCAATAGCTGCCGAGGCC
AAAGCGCTGGGACGTGGCGTCCTTCCTTCGGTAGCGATCAAAATACCCTC
TCATGCGTTCAGTAGCACCCCACAGCCGACTATGGTTAACAAGGATACTG
GAAACGTGGAAGACAAGAAATCATCCAAAGCCAGCGGAGCAATACAAGGG
GCACAACCAGCATTGAAACAAGGAAGTTCAGAAAAATCGGCACCATCGGT
TCAGAAGTGTATCGATAGGAAGGAGGTAAAGCAGGACGGGGATAGGAGTG
ATGAAGTTGCGGAGATGGCTGATACCAAAGGTGAGGAGTTTCCGGCAGTT
GGCGACAATACCAAGGAAGGGAAGCAGAAGGAATGTACAGAAACAATTGT
CCAGAGCAAAAAAAATCAAAACCCCGGTGAGGAAGTATGTGCGTCGCACA
TGGCGAAGGTGAAGGATGTCCAGATCAAGACCGAACAACTCGTTGACAAT
AACAGCGAATCATGCCAAGATGAACAGCTATCAGGAAGGGCAAAAGTCGC
AAAAGAGCAAAGTGTTGACATGGAAGACAGTTCCGTTGTACATACGAGAC
TAACAAAAACAGTTGCGGGACAGGTAAGTGCGGAGGCTGGAACTTCTGGA
ATGGTTGACGGAGCGACCACGGTGAAGCACGAAGCCGAGTATGTGGATAG
TTGTACTAACTTAACGGACGGAAGAAAGGCTGATGGTGATGCTGCTGCTG
GCAGAGGTGCGGGTGAAGGGGAAGGGCGAGAAACAGAGAAGGTCAAGGCT
GTGAAACAAGAAGCTCACATGGCGGGTGTAGTAGAGACGGACGAAGGAGA
GCGAAAGTCAGGTGACGGAGAAACACGGAGCGTTAGTGGCGATGCATATG
GGCGAAGACACGGGGCAGGAGATGAAAGCGACCACGAAGAAGGACAACAC
GAGGCTGCCGGAAAGCAAACAAGCACGGCGTTAAACGCGGACAGCAAACG
CGACGAGAGCGCCGCCGAAAGCAGGAAACGCACGCGCGACGAGGAGGAGA
CGGCGGGAAACAAGCGTGCGAAGACGGGCGACGGATGTGAGCGGAAGCAA
CCGACAGCAGCAGACGGAGGAGATGGCGGCGGGGGGCAGGGGTGGCAGCA
GTCAAATGGTGGAAACAGAGCGGCGGCTTCGTAG

Coding sequence (CDS) from alignment at tig00000860_pilon:770371..772704-

>Ggra8907.t1 ID=Ggra8907.t1|Name=Ggra8907.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2334bp|location=Sequence derived from alignment at tig00000860_pilon:770371..772704- (Gracilaria gracilis GNS1m male)
ATGGCCGACCGTAACGCGCAACCAAGCTCCACCTCTGCACCAGATGCCGA
GTCCTCCACTCCAAAGCAAGAGAGCAAAGATGAACCGCAATTTCAACAAA
CCTCCGCAGATTCCCTCCAAACTGGCACATCGCAAGTGCGCAATTCCGTT
CTGGAGGCCATAGCAAACCATCAGAAGGAACGCATTTCGGAGCTGGAGCG
CAACCTGGAGAAAAAACGCGCCACCATACAGCGTCTCTGTGCCGCTTCGC
CACTCCCTCATTCTGCTTTTCCAATTGTTCCCCCAGCTGCAATACCCGCA
ATGCGCGCAATTCCAACAAATGCTCCAGTTCCGTCCGCACCGTCAAACTC
CACGCCGCTCAATCAGACACCCACCTCAGTGGCCTCAGAGGGGGCATCAA
CAAATCCCCGACCGTCATCTCATCCAGCACCTTCAAGTTCTCAACCGCAG
CCTGCAAAGTCGGCAGCTGCATCCAACCCGGTCATGCCAGCGCCCATGCT
TGGTTTCCCTCCACAACCACATCTCCCTCCTTACCCTTACATTTATCCTC
CTCCCGATCCGTCTTTTGCAGCTCAGTACATGGGAGCCATGCCTCCCCCC
ATTCTCCATCCGACCCAACCTTCACACCCCCAACCATCAGGTCATGTACA
TCAGCAAGAGAAGGGGAACGACGGCCAAGAACAGAAACAAAGTAGATACT
GGACCCCCGATGAACATGAGAGATTTCTTGCCGGTATGAAAGCATGCGGG
CCGAAAAACTACCTGCAAATATCCGAGTTTGTCGGCACACGAAACGCAAA
ACAAGTTCGCACCCACGCACAAAAATACCAGAAAAGGTTGGAACGAGAGG
ATGCCAAGCGACGAAGTGATATGCGCCACGGAAGAATAAACAATTCGGGC
GCTGTGACCTCCGTCGCAGCTGACGCAGCAGCGGCAGTCAAAGCGGCGGC
TGCGGCAGCAATGCGCGGAAAAGTTCCTGGCATATCCACTGCACAAGGCA
AAGATTCAGACTCGACCGACACGCCTGCTGGTCCCAGCAGCTCTTCCAGT
GGAAAGCAATGTCAGTCATCGCATCAGCACTCACAAGGGGCCAGTAGTGC
CGAAGGAAGCATAAGCGCGAATACAGCTACAGAGCGCCATGGAGAGACCA
GCGGAACTCACAATCACTCAGCTGCAATGGCTGCAATAGCTGCCGAGGCC
AAAGCGCTGGGACGTGGCGTCCTTCCTTCGGTAGCGATCAAAATACCCTC
TCATGCGTTCAGTAGCACCCCACAGCCGACTATGGTTAACAAGGATACTG
GAAACGTGGAAGACAAGAAATCATCCAAAGCCAGCGGAGCAATACAAGGG
GCACAACCAGCATTGAAACAAGGAAGTTCAGAAAAATCGGCACCATCGGT
TCAGAAGTGTATCGATAGGAAGGAGGTAAAGCAGGACGGGGATAGGAGTG
ATGAAGTTGCGGAGATGGCTGATACCAAAGGTGAGGAGTTTCCGGCAGTT
GGCGACAATACCAAGGAAGGGAAGCAGAAGGAATGTACAGAAACAATTGT
CCAGAGCAAAAAAAATCAAAACCCCGGTGAGGAAGTATGTGCGTCGCACA
TGGCGAAGGTGAAGGATGTCCAGATCAAGACCGAACAACTCGTTGACAAT
AACAGCGAATCATGCCAAGATGAACAGCTATCAGGAAGGGCAAAAGTCGC
AAAAGAGCAAAGTGTTGACATGGAAGACAGTTCCGTTGTACATACGAGAC
TAACAAAAACAGTTGCGGGACAGGTAAGTGCGGAGGCTGGAACTTCTGGA
ATGGTTGACGGAGCGACCACGGTGAAGCACGAAGCCGAGTATGTGGATAG
TTGTACTAACTTAACGGACGGAAGAAAGGCTGATGGTGATGCTGCTGCTG
GCAGAGGTGCGGGTGAAGGGGAAGGGCGAGAAACAGAGAAGGTCAAGGCT
GTGAAACAAGAAGCTCACATGGCGGGTGTAGTAGAGACGGACGAAGGAGA
GCGAAAGTCAGGTGACGGAGAAACACGGAGCGTTAGTGGCGATGCATATG
GGCGAAGACACGGGGCAGGAGATGAAAGCGACCACGAAGAAGGACAACAC
GAGGCTGCCGGAAAGCAAACAAGCACGGCGTTAAACGCGGACAGCAAACG
CGACGAGAGCGCCGCCGAAAGCAGGAAACGCACGCGCGACGAGGAGGAGA
CGGCGGGAAACAAGCGTGCGAAGACGGGCGACGGATGTGAGCGGAAGCAA
CCGACAGCAGCAGACGGAGGAGATGGCGGCGGGGGGCAGGGGTGGCAGCA
GTCAAATGGTGGAAACAGAGCGGCGGCTTCGTAG