Ggra8903.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8903.t1
Unique NameGgra8903.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length136
Homology
BLAST of Ggra8903.t1 vs. uniprot
Match: A0A2V3J4D5 (Ribonucloprotein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J4D5_9FLOR)

HSP 1 Score: 202 bits (513), Expect = 3.560e-64
Identity = 100/131 (76.34%), Postives = 121/131 (92.37%), Query Frame = 0
Query:    5 ENETYLSPIARPLAGRKLTKKVFKLLGAAATAKALKRGVKEVVLSIRKGDTGVVVLAGDVFPIDVIAHVPILCEESNIPYCFVGRKADLGAAGLTNRPTSVAMVSEKKASGDLTGHLEEVKEEVRSIQNLY 135
            E E YLSPIA+PLAGRKL+KK+FKL+GAAAT K+LKRGV+EVVLSIRKGD G+VVLAGDVFPIDVIAHVP+L EESNIPYC+VGRK +LG+AGLTNRPTSV M+SEKK++GD+   L+E+++EV++IQNLY
Sbjct:   43 EPEAYLSPIAKPLAGRKLSKKLFKLIGAAATGKSLKRGVREVVLSIRKGDNGIVVLAGDVFPIDVIAHVPLLSEESNIPYCYVGRKTELGSAGLTNRPTSVVMISEKKSTGDVKDTLQELRKEVQAIQNLY 173          
BLAST of Ggra8903.t1 vs. uniprot
Match: R7QCR1 (Ribonucloprotein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QCR1_CHOCR)

HSP 1 Score: 174 bits (442), Expect = 3.930e-53
Identity = 87/126 (69.05%), Postives = 107/126 (84.92%), Query Frame = 0
Query:   10 LSPIARPLAGRKLTKKVFKLLGAAATAKALKRGVKEVVLSIRKGDTGVVVLAGDVFPIDVIAHVPILCEESNIPYCFVGRKADLGAAGLTNRPTSVAMVSEKKASGDLTGHLEEVKEEVRSIQNLY 135
            +SPIA P+AGRKLTKK+FKL+G AA  KA+ RG+KEVVL+IRK   GVV++AGDVFPI+VIAH+P++CEE+NIPYCFV RK +LGAAGLT RPTSV MVSEKK+ GD+   L E+K EV +IQNL+
Sbjct:   66 VSPIATPMAGRKLTKKLFKLIGHAAKEKAICRGIKEVVLAIRKSQKGVVIMAGDVFPIEVIAHLPVVCEEANIPYCFVSRKTELGAAGLTKRPTSVVMVSEKKSGGDVKQELLEIKGEVAAIQNLF 191          
BLAST of Ggra8903.t1 vs. uniprot
Match: A0A507CNN1 (Ribonucloprotein n=1 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507CNN1_9FUNG)

HSP 1 Score: 137 bits (345), Expect = 2.040e-38
Identity = 70/122 (57.38%), Postives = 91/122 (74.59%), Query Frame = 0
Query:   10 LSPIARPLAGRKLTKKVFKLLGAAATAKALKRGVKEVVLSIRKGDTGVVVLAGDVFPIDVIAHVPILCEESNIPYCFVGRKADLGAAGLTNRPTSVAMVSEKKASGDLTGHLEEVKEEVRSI 131
            LSPIA PLAG+KLTKKV++ +  AA  K+++RGVKEVV ++RKG  GVVV+AGD+ PIDVI H+PILCEE+N+PYC+V  K DLG AG+T RPTS  M+  K    D+    EE+  EV+ +
Sbjct:   66 LSPIAHPLAGKKLTKKVYRAVRKAAKVKSVRRGVKEVVKALRKGQKGVVVIAGDISPIDVITHIPILCEENNVPYCYVPSKEDLGYAGVTKRPTSCVMIQVKD---DIKALYEEINGEVKDM 184          
BLAST of Ggra8903.t1 vs. uniprot
Match: A0A6G1F6H2 (Ribonucloprotein n=1 Tax=Oryza meyeriana var. granulata TaxID=110450 RepID=A0A6G1F6H2_9ORYZ)

HSP 1 Score: 133 bits (335), Expect = 2.200e-37
Identity = 72/123 (58.54%), Postives = 91/123 (73.98%), Query Frame = 0
Query:    8 TYLSPIARPLAGRKLTKKVFKLLGAAATAKALKRGVKEVVLSIRKGDTGVVVLAGDVFPIDVIAHVPILCEESNIPYCFVGRKADLGAAGLTNRPTSVAMVSEKKASGDLTGHLEEVKEEVRS 130
            T L+PIA+PLAGRKL K+  KL+  A+ AK LKRGVKEVV SIR+G+ G+ V+AG++ PIDVI HVPILCEE+NIPY +V  K DL  AG T RPT   +V  K A G++    EEVKE+++S
Sbjct:   18 TALAPIAKPLAGRKLCKRTLKLVRRASEAKFLKRGVKEVVKSIRRGNKGLCVIAGNISPIDVITHVPILCEEANIPYIYVPSKEDLATAGTTKRPTCCVLVMTKPAKGEIN---EEVKEKLKS 137          
BLAST of Ggra8903.t1 vs. uniprot
Match: B8AI40 (Ribonucloprotein n=8 Tax=Oryzeae TaxID=147380 RepID=B8AI40_ORYSI)

HSP 1 Score: 133 bits (334), Expect = 2.780e-37
Identity = 71/123 (57.72%), Postives = 91/123 (73.98%), Query Frame = 0
Query:    8 TYLSPIARPLAGRKLTKKVFKLLGAAATAKALKRGVKEVVLSIRKGDTGVVVLAGDVFPIDVIAHVPILCEESNIPYCFVGRKADLGAAGLTNRPTSVAMVSEKKASGDLTGHLEEVKEEVRS 130
            T L+PIA+PLAG+KL K+  KL+  A+ AK LKRGVKEVV SIR+G+ G+ V+AG++ PIDVI HVPILCEE+NIPY +V  K DL  AG T RPT   +V  K A G++    EEVKE+++S
Sbjct:   14 TALAPIAKPLAGKKLCKRTLKLVRRASEAKCLKRGVKEVVKSIRRGNKGLCVIAGNISPIDVITHVPILCEEANIPYIYVPSKEDLATAGTTKRPTCCVLVMTKPAKGEIN---EEVKEKLKS 133          
BLAST of Ggra8903.t1 vs. uniprot
Match: A0A833VAV9 (Ribonucloprotein n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833VAV9_9POAL)

HSP 1 Score: 132 bits (332), Expect = 6.280e-37
Identity = 72/121 (59.50%), Postives = 90/121 (74.38%), Query Frame = 0
Query:   10 LSPIARPLAGRKLTKKVFKLLGAAATAKALKRGVKEVVLSIRKGDTGVVVLAGDVFPIDVIAHVPILCEESNIPYCFVGRKADLGAAGLTNRPTSVAMVSEKKASGDLTGHLEEVKEEVRS 130
            L PIA+PLAG+KL K+ FKL+  AA AK L+RGVKEVV SIR+G+ G+ V+AG++ PIDVI H+PILCEES IPY +V  K DL  AG T RPT   +VS K A G+L    EEVKE+++S
Sbjct:   20 LMPIAKPLAGKKLCKRTFKLVRRAAEAKCLRRGVKEVVKSIRRGNKGLCVIAGNISPIDVITHLPILCEESGIPYIYVPTKEDLANAGATKRPTCCVLVSTKPAKGELE---EEVKEKLQS 137          
BLAST of Ggra8903.t1 vs. uniprot
Match: F2E1A0 (Ribonucloprotein n=8 Tax=Triticeae TaxID=147389 RepID=F2E1A0_HORVV)

HSP 1 Score: 131 bits (330), Expect = 1.120e-36
Identity = 69/121 (57.02%), Postives = 90/121 (74.38%), Query Frame = 0
Query:   10 LSPIARPLAGRKLTKKVFKLLGAAATAKALKRGVKEVVLSIRKGDTGVVVLAGDVFPIDVIAHVPILCEESNIPYCFVGRKADLGAAGLTNRPTSVAMVSEKKASGDLTGHLEEVKEEVRS 130
            L+PIA+PLAG+KL+KK  KL+  A+ AK LKRGVKEVV SIR+G  G+ V+AG++ PIDVI H+PILCEE+N+PY +V  K +L  AG T RPT   +V  K A G++T   EEVKE++ S
Sbjct:   16 LAPIAKPLAGKKLSKKTLKLVRRASEAKCLKRGVKEVVKSIRRGSKGLCVIAGNISPIDVITHLPILCEEANVPYIYVTSKEELATAGTTKRPTCCVLVMTKPAKGEIT---EEVKEKLES 133          
BLAST of Ggra8903.t1 vs. uniprot
Match: K3WNU8 (Ribonucloprotein n=5 Tax=Oomycota TaxID=4762 RepID=K3WNU8_GLOUD)

HSP 1 Score: 130 bits (327), Expect = 2.760e-36
Identity = 65/131 (49.62%), Postives = 93/131 (70.99%), Query Frame = 0
Query:    5 ENETYLSPIARPLAGRKLTKKVFKLLGAAATAKALKRGVKEVVLSIRKGDTGVVVLAGDVFPIDVIAHVPILCEESNIPYCFVGRKADLGAAGLTNRPTSVAMVSEKKASGDLTGHLEEVKEEVRSIQNLY 135
            E   ++S IA+PLA +K TK+ +K++  A   K +KRGVKEVV SIRKG+ GV ++AGD+ PIDVI+H+P+LCEE++IPY F   K DLGA+ L+ RPTS  +++  KA  +     EE+ EEV+ +Q +Y
Sbjct:   15 ERVKHVSVIAKPLASKKQTKRAYKVVKKATKVKGIKRGVKEVVKSIRKGEKGVCIIAGDISPIDVISHIPVLCEENDIPYLFTPSKVDLGASALSKRPTSCILITPGKAGFNALDAYEELLEEVKQVQPVY 145          
BLAST of Ggra8903.t1 vs. uniprot
Match: A0A0D3GF92 (Ribonucloprotein n=9 Tax=Poaceae TaxID=4479 RepID=A0A0D3GF92_9ORYZ)

HSP 1 Score: 130 bits (326), Expect = 4.530e-36
Identity = 68/121 (56.20%), Postives = 90/121 (74.38%), Query Frame = 0
Query:   10 LSPIARPLAGRKLTKKVFKLLGAAATAKALKRGVKEVVLSIRKGDTGVVVLAGDVFPIDVIAHVPILCEESNIPYCFVGRKADLGAAGLTNRPTSVAMVSEKKASGDLTGHLEEVKEEVRS 130
            L+PIA+PLAG+KL K+  KL+  A+ AK LKRGVKEVV SIR+G  G+ ++AG++ PIDVI HVPILCEE+NIPY +V  K DL  AG+T RPT   +V  K A G+L    E+VKE++++
Sbjct:   16 LAPIAKPLAGKKLCKRTLKLVRRASEAKCLKRGVKEVVKSIRRGQKGLCIIAGNISPIDVITHVPILCEEANIPYVYVPSKEDLATAGITKRPTCCVLVLTKPAKGELE---EDVKEKLKT 133          
BLAST of Ggra8903.t1 vs. uniprot
Match: A0A0E0K4S6 (Ribonucloprotein n=1 Tax=Oryza punctata TaxID=4537 RepID=A0A0E0K4S6_ORYPU)

HSP 1 Score: 133 bits (334), Expect = 5.190e-36
Identity = 71/123 (57.72%), Postives = 91/123 (73.98%), Query Frame = 0
Query:    8 TYLSPIARPLAGRKLTKKVFKLLGAAATAKALKRGVKEVVLSIRKGDTGVVVLAGDVFPIDVIAHVPILCEESNIPYCFVGRKADLGAAGLTNRPTSVAMVSEKKASGDLTGHLEEVKEEVRS 130
            T L+PIA+PLAG+KL K+  KL+  A+ AK LKRGVKEVV SIR+G+ G+ V+AG++ PIDVI HVPILCEE+NIPY +V  K DL  AG T RPT   +V  K A G++    EEVKE+++S
Sbjct:   14 TALAPIAKPLAGKKLCKRTLKLVRRASEAKCLKRGVKEVVKSIRRGNKGLCVIAGNISPIDVITHVPILCEEANIPYIYVPSKEDLATAGTTKRPTCCVLVMTKPAKGEIN---EEVKEKLKS 133          
The following BLAST results are available for this feature:
BLAST of Ggra8903.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J4D53.560e-6476.34Ribonucloprotein n=1 Tax=Gracilariopsis chorda Tax... [more]
R7QCR13.930e-5369.05Ribonucloprotein n=1 Tax=Chondrus crispus TaxID=27... [more]
A0A507CNN12.040e-3857.38Ribonucloprotein n=1 Tax=Synchytrium endobioticum ... [more]
A0A6G1F6H22.200e-3758.54Ribonucloprotein n=1 Tax=Oryza meyeriana var. gran... [more]
B8AI402.780e-3757.72Ribonucloprotein n=8 Tax=Oryzeae TaxID=147380 RepI... [more]
A0A833VAV96.280e-3759.50Ribonucloprotein n=1 Tax=Carex littledalei TaxID=5... [more]
F2E1A01.120e-3657.02Ribonucloprotein n=8 Tax=Triticeae TaxID=147389 Re... [more]
K3WNU82.760e-3649.62Ribonucloprotein n=5 Tax=Oomycota TaxID=4762 RepID... [more]
A0A0D3GF924.530e-3656.20Ribonucloprotein n=9 Tax=Poaceae TaxID=4479 RepID=... [more]
A0A0E0K4S65.190e-3657.72Ribonucloprotein n=1 Tax=Oryza punctata TaxID=4537... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002415H/ACA ribonucleoprotein complex, subunit Nhp2, eukaryotePRINTSPR00883NUCLEARHMGcoord: 86..98
score: 50.77
coord: 25..40
score: 31.25
coord: 42..52
score: 29.09
coord: 12..25
score: 55.71
IPR018492Ribosomal protein L7Ae/L8/Nhp2 familyPRINTSPR00881L7ARS6FAMILYcoord: 84..98
score: 44.24
coord: 74..84
score: 54.13
coord: 39..53
score: 30.3
coord: 58..71
score: 43.83
IPR02906450S ribosomal protein L30e-likeGENE3D3.30.1330.30coord: 6..132
e-value: 8.9E-43
score: 147.0
IPR02906450S ribosomal protein L30e-likeSUPERFAMILY55315L30e-likecoord: 9..128
IPR004038Ribosomal protein L7Ae/L30e/S12e/Gadd45PFAMPF01248Ribosomal_L7Aecoord: 25..117
e-value: 1.7E-20
score: 72.5
NoneNo IPR availablePANTHERPTHR23105RIBOSOMAL PROTEIN L7AE FAMILY MEMBERcoord: 9..127
NoneNo IPR availablePANTHERPTHR23105:SF146SUBFAMILY NOT NAMEDcoord: 9..127

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:757472..757971 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8903.t1Ggra8903.t1Gracilaria gracilis GNS1m malemRNAtig00000860_pilon 757472..757971 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8903.t1 ID=Ggra8903.t1|Name=Ggra8903.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=136bp
MTDGENETYLSPIARPLAGRKLTKKVFKLLGAAATAKALKRGVKEVVLSI
RKGDTGVVVLAGDVFPIDVIAHVPILCEESNIPYCFVGRKADLGAAGLTN
RPTSVAMVSEKKASGDLTGHLEEVKEEVRSIQNLY*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002415H/ACA_rnp_Nhp2_euk
IPR018492Ribosomal_L7Ae/L8/Nhp2
IPR029064L30e-like
IPR004038Ribosomal_L7Ae/L30e/S12e/Gad45