Ggra8903.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8903.t1
Unique NameGgra8903.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length136
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:757472..757971 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog40148.OGLUM02G31750.1
PFAMsRibosomal_L7Ae
Max annot lvl35493|Streptophyta
KEGG koko:K11129
KEGG Pathwayko03008,map03008
KEGG ModuleM00425
GOsGO:0000154,GO:0000469,GO:0000470,GO:0001522,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005732,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016073,GO:0019538,GO:0022613,GO:0030515,GO:0031118,GO:0031120,GO:0031429,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034513,GO:0034641,GO:0034645,GO:0034660,GO:0040031,GO:0042254,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0072588,GO:0090304,GO:0090305,GO:0090501,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1990904
Evalue1.7e-38
EggNOG OGsCOG1358@1|root,KOG3167@2759|Eukaryota,37TXB@33090|Viridiplantae,3GI3T@35493|Streptophyta,3KZ9E@4447|Liliopsida,3IH97@38820|Poales
DescriptionRibosomal protein L7Ae/L30e/S12e/Gadd45 family
COG categoryA
BRITEko00000,ko00001,ko00002,ko03009,ko03032
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8903Ggra8903Gracilaria gracilis GNS1m malegenetig00000860_pilon 757472..757971 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8903.t1Ggra8903.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 757472..757971 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8903.t1.stop1Ggra8903.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 757472..757474 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8903.t1.CDS1Ggra8903.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 757472..757833 -
Ggra8903.t1.CDS2Ggra8903.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000860_pilon 757926..757971 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8903.t1.exon1Ggra8903.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 757472..757833 -
Ggra8903.t1.exon2Ggra8903.t1.exon2Gracilaria gracilis GNS1m maleexontig00000860_pilon 757926..757971 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8903.t1.intron1Ggra8903.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000860_pilon 757834..757925 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8903.t1.start1Ggra8903.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 757969..757971 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8903.t1 ID=Ggra8903.t1|Name=Ggra8903.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=136bp
MTDGENETYLSPIARPLAGRKLTKKVFKLLGAAATAKALKRGVKEVVLSI
RKGDTGVVVLAGDVFPIDVIAHVPILCEESNIPYCFVGRKADLGAAGLTN
RPTSVAMVSEKKASGDLTGHLEEVKEEVRSIQNLY*
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spliced messenger RNA

>Ggra8903.t1 ID=Ggra8903.t1|Name=Ggra8903.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=408bp|location=Sequence derived from alignment at tig00000860_pilon:757472..757971- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGGATGGCGAAAACGAAACATACCTTTCACCGATTGCAAGACCACT
TGCCGGACGAAAGCTCACGAAGAAGGTTTTCAAACTGCTTGGAGCAGCAG
CAACTGCAAAGGCTCTGAAACGGGGAGTAAAAGAGGTAGTTTTATCGATT
CGAAAAGGTGACACTGGCGTGGTTGTGCTTGCTGGTGATGTCTTTCCTAT
TGACGTTATAGCTCACGTTCCTATTCTGTGTGAGGAGAGCAACATCCCGT
ACTGCTTCGTAGGGCGCAAAGCTGACCTTGGTGCTGCGGGGCTCACTAAT
CGACCTACAAGCGTAGCTATGGTTTCTGAGAAGAAAGCTTCAGGAGATTT
GACCGGGCATTTAGAAGAAGTTAAGGAAGAGGTTCGAAGTATTCAGAATT
TGTACTGA
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protein sequence of Ggra8903.t1

>Ggra8903.t1 ID=Ggra8903.t1|Name=Ggra8903.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=136bp
MTDGENETYLSPIARPLAGRKLTKKVFKLLGAAATAKALKRGVKEVVLSI
RKGDTGVVVLAGDVFPIDVIAHVPILCEESNIPYCFVGRKADLGAAGLTN
RPTSVAMVSEKKASGDLTGHLEEVKEEVRSIQNLY*
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mRNA from alignment at tig00000860_pilon:757472..757971-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8903.t1 ID=Ggra8903.t1|Name=Ggra8903.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=500bp|location=Sequence derived from alignment at tig00000860_pilon:757472..757971- (Gracilaria gracilis GNS1m male)
ATGACGGATGGCGAAAACGAAACATACCTTTCACCGATTGCAAGACGTAA
GTTCGGAACCATACTAAGTATTGATCCTCCCTTGATAGCTCTAGATCCAC
TGACACGAATACAATTTCTGCTGTCCTTGTTTAACCAGCACTTGCCGGAC
GAAAGCTCACGAAGAAGGTTTTCAAACTGCTTGGAGCAGCAGCAACTGCA
AAGGCTCTGAAACGGGGAGTAAAAGAGGTAGTTTTATCGATTCGAAAAGG
TGACACTGGCGTGGTTGTGCTTGCTGGTGATGTCTTTCCTATTGACGTTA
TAGCTCACGTTCCTATTCTGTGTGAGGAGAGCAACATCCCGTACTGCTTC
GTAGGGCGCAAAGCTGACCTTGGTGCTGCGGGGCTCACTAATCGACCTAC
AAGCGTAGCTATGGTTTCTGAGAAGAAAGCTTCAGGAGATTTGACCGGGC
ATTTAGAAGAAGTTAAGGAAGAGGTTCGAAGTATTCAGAATTTGTACTGA
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Coding sequence (CDS) from alignment at tig00000860_pilon:757472..757971-

>Ggra8903.t1 ID=Ggra8903.t1|Name=Ggra8903.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=408bp|location=Sequence derived from alignment at tig00000860_pilon:757472..757971- (Gracilaria gracilis GNS1m male)
ATGACGGATGGCGAAAACGAAACATACCTTTCACCGATTGCAAGACCACT
TGCCGGACGAAAGCTCACGAAGAAGGTTTTCAAACTGCTTGGAGCAGCAG
CAACTGCAAAGGCTCTGAAACGGGGAGTAAAAGAGGTAGTTTTATCGATT
CGAAAAGGTGACACTGGCGTGGTTGTGCTTGCTGGTGATGTCTTTCCTAT
TGACGTTATAGCTCACGTTCCTATTCTGTGTGAGGAGAGCAACATCCCGT
ACTGCTTCGTAGGGCGCAAAGCTGACCTTGGTGCTGCGGGGCTCACTAAT
CGACCTACAAGCGTAGCTATGGTTTCTGAGAAGAAAGCTTCAGGAGATTT
GACCGGGCATTTAGAAGAAGTTAAGGAAGAGGTTCGAAGTATTCAGAATT
TGTACTGA
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