Ggra8902.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8902.t1
Unique NameGgra8902.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length196
Homology
BLAST of Ggra8902.t1 vs. uniprot
Match: A0A2V3J4K9 (DNA-directed RNA polymerases I, II, and III subunit rpabc1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J4K9_9FLOR)

HSP 1 Score: 346 bits (887), Expect = 8.950e-120
Identity = 176/195 (90.26%), Postives = 186/195 (95.38%), Query Frame = 0
Query:    1 MLSDRGYAVLNTSEDMNLSKDDFAAQMQTRNYNRESLTMLRQRRDNPADQIFVFFPDEERGKSVGVDVVSAITKRMETNGVNNALMVLQSGLTPTAKGAVEKMSASGRCLLEVFMENELLVNITHHQLVPKHELMSEDSKRALLRRYKLKESQLPRIQRSDPIARYYGLVPGNVVKITRPSETAGRYVTYRLCVA 195
            MLSDRGYAVLNT+ED+NLSK+DF A MQT N+NRESLTMLRQRRDNPADQIFVFFPDE RGKSVGVDVVSA+TKRME+NGVNN +MVLQ+GLTPTAKGAVEKMSASGRCLLEVFMENELLVNIT HQLVP HEL+SE SK ALLRRYKLKESQLPRIQRSDPIARYYGLVPGNVVKITRPSETAGRYVTYRLCV+
Sbjct:    1 MLSDRGYAVLNTTEDLNLSKEDFQAAMQTANFNRESLTMLRQRRDNPADQIFVFFPDEMRGKSVGVDVVSALTKRMESNGVNNGIMVLQTGLTPTAKGAVEKMSASGRCLLEVFMENELLVNITRHQLVPIHELLSEPSKHALLRRYKLKESQLPRIQRSDPIARYYGLVPGNVVKITRPSETAGRYVTYRLCVS 195          
BLAST of Ggra8902.t1 vs. uniprot
Match: R7QDZ3 (RNA polymerase I, II, III common subunit n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QDZ3_CHOCR)

HSP 1 Score: 246 bits (629), Expect = 3.630e-80
Identity = 123/194 (63.40%), Postives = 159/194 (81.96%), Query Frame = 0
Query:    1 MLSDRGYAVLNTSEDMNLSKDDFAAQMQTRNYNRESLTMLRQRRDNPADQIFVFFPDEERGKSVGVDVVSAITKRMETNGVNNALMVLQSGLTPTAKGAVEKMSASGRCLLEVFMENELLVNITHHQLVPKHELMSEDSKRALLRRYKLKESQLPRIQRSDPIARYYGLVPGNVVKITRPSETAGRYVTYRLCV 194
            MLSDRGYAVLN+ ED+   ++ FA +  T+NYNRESLT+LRQ++D+  DQI+VFFP+E + K +GV  +    KRME +GV +A++VL++GLTP AK  V ++++  +  +E+F+ENEL+VNIT H LVPKH+++S D K+ALLRRYKLKESQLPRIQ++DPIARYYGL  GNVVKITRPSETAGRYVTYRLCV
Sbjct:   23 MLSDRGYAVLNSEEDLLQPREVFAREFITQNYNRESLTLLRQKKDDDKDQIYVFFPEEIKNKPLGVKPLLERGKRMERDGVRHAIIVLETGLTPYAKKTVAELNSGDQARMEIFIENELIVNITKHILVPKHDVLSADEKKALLRRYKLKESQLPRIQKTDPIARYYGLTHGNVVKITRPSETAGRYVTYRLCV 216          
BLAST of Ggra8902.t1 vs. uniprot
Match: A0A7S1ESI1 (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1ESI1_9RHOD)

HSP 1 Score: 213 bits (542), Expect = 4.580e-67
Identity = 110/194 (56.70%), Postives = 146/194 (75.26%), Query Frame = 0
Query:    1 MLSDRGYAVLNTSEDMNLSKDDFAAQMQTRNYNRESLTMLRQRRDNPADQIFVFFPDEERGKSVGVDVVSAITKRMETNGVNNALMVLQSGLTPTAKGAVEKMSASGRCLLEVFMENELLVNITHHQLVPKHELMSEDSKRALLRRYKLKESQLPRIQRSDPIARYYGLVPGNVVKITRPSETAGRYVTYRLCV 194
            +L DRGY VL+T  D+ +S + F  +     +  E+LT+L+ +RDNP+DQI+VFFP + +   +GV  +    +RM+ +G+++A++VL SG+TP+AK AV  +S+  R  LE+F++NELLVNIT H LVPKHEL+S   KRALL+ YKLKESQLPRIQ  DP+ARYYGL PG VV+ITRPSETAGRYVTYRL V
Sbjct:   21 LLRDRGYLVLDTDTDLGMSAEQFRERYAQSKFAAEALTILKSKRDNPSDQIYVFFPQDPK---LGVKPIREYCERMQRDGIHHAIIVLLSGMTPSAKEAVHIVSSQHR--LELFLQNELLVNITEHVLVPKHELLSPAEKRALLKMYKLKESQLPRIQMKDPVARYYGLTPGQVVRITRPSETAGRYVTYRLVV 209          
BLAST of Ggra8902.t1 vs. uniprot
Match: A0A6T6JZI1 (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A6T6JZI1_9RHOD)

HSP 1 Score: 210 bits (534), Expect = 8.250e-66
Identity = 108/194 (55.67%), Postives = 143/194 (73.71%), Query Frame = 0
Query:    1 MLSDRGYAVLNTSEDMNLSKDDFAAQMQTRNYNRESLTMLRQRRDNPADQIFVFFPDEERGKSVGVDVVSAITKRMETNGVNNALMVLQSGLTPTAKGAVEKMSASGRCLLEVFMENELLVNITHHQLVPKHELMSEDSKRALLRRYKLKESQLPRIQRSDPIARYYGLVPGNVVKITRPSETAGRYVTYRLCV 194
            ML DRGY V+  S+D+  + ++F+ +     + RESLT+L+Q+RD+PADQI+VFF     G  V V  +     RME +GV+ A+M++  GLTP+A  A+ K+    R  +E F+ENELLVNIT H LVPKHE++S   K+ALL+RYKLKESQLPR+Q+ DP++RYYGL PG+VV+ITRPSETAGRYVTYRL V
Sbjct:   24 MLVDRGYIVV--SDDLKTTLEEFSQRFHDAGFARESLTLLKQKRDDPADQIYVFFSQGTEGPKVSVKSLKDTIARMERDGVHRAIMIMSEGLTPSASDAISKLD---RYRIEPFLENELLVNITRHVLVPKHEMLSTAEKKALLKRYKLKESQLPRVQQRDPVSRYYGLSPGDVVRITRPSETAGRYVTYRLVV 212          
BLAST of Ggra8902.t1 vs. uniprot
Match: M2XGL8 (DNA-directed RNA polymerase II subunit E n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XGL8_GALSU)

HSP 1 Score: 206 bits (523), Expect = 3.850e-64
Identity = 107/194 (55.15%), Postives = 145/194 (74.74%), Query Frame = 0
Query:    1 MLSDRGYAVLNTSEDMNLSKDDFAAQMQTRNYNRESLTMLRQRRDNPADQIFVFFPDEERGKSVGVDVVSAITKRMETNGVNNALMVLQSGLTPTAKGAVEKMSASGRCLLEVFMENELLVNITHHQLVPKHELMSEDSKRALLRRYKLKESQLPRIQRSDPIARYYGLVPGNVVKITRPSETAGRYVTYRLCV 194
            ML DRGY VL TS D+ +++++F +++Q  NY+RESLT+L+Q + +P+DQI+VFFP EER   V V  +     RM+   V  A++V+   L+P AK  ++K+++  +  +EVF+E ELLVNITHH+LVPKHE++S + K+ LL+RY LKESQLPRI  +DP+ARY GL  G VVKITRPSETAGRYVTYRL V
Sbjct:   24 MLRDRGYVVLETSSDLEMTREEFGSRLQQANYSRESLTLLKQHQHDPSDQIYVFFPAEER---VSVKTLRDYFVRMDQERVYKAILVVIKSLSPFAKQGIQKVASQFK--VEVFLEMELLVNITHHELVPKHEVLSTEGKKQLLKRYHLKESQLPRILMTDPVARYLGLQKGQVVKITRPSETAGRYVTYRLVV 212          
BLAST of Ggra8902.t1 vs. uniprot
Match: A0A7J7IF98 (Dna-directed RNA n=2 Tax=Cyanidiaceae TaxID=265316 RepID=A0A7J7IF98_9RHOD)

HSP 1 Score: 196 bits (499), Expect = 1.620e-60
Identity = 108/194 (55.67%), Postives = 139/194 (71.65%), Query Frame = 0
Query:    1 MLSDRGYAVLNTSEDMNLSKDDFAAQMQTRNYNRESLTMLRQRRDNPADQIFVFFPDEERGKSVGVDVVSAITKRMETNGVNNALMVLQSGLTPTAKGAVEKMSASGRCLLEVFMENELLVNITHHQLVPKHELMSEDSKRALLRRYKLKESQLPRIQRSDPIARYYGLVPGNVVKITRPSETAGRYVTYRLCV 194
            ML DRGY VL T  D+ L  ++FA +       RESLTMLRQ R + ++QI+VFFP EE+   VGV  +     R+ET  V  A++V+Q+GLTP AK AV ++    R  LE+F E ELLVNIT HQLVP+HE+++ + K+ LLRRY+LKE+QLPRI +SDP+ARY+G+  G V+KITR SETAGRYVTYRL V
Sbjct:   23 MLRDRGYLVLPTKTDLELPLEEFAHKFDAAGRARESLTMLRQHRVDRSNQIYVFFPKEEK---VGVKPIREYCMRLETENVLRAIIVVQTGLTPIAKQAVAELQP--RFHLELFQEAELLVNITKHQLVPRHEVLTAEQKKTLLRRYQLKETQLPRILQSDPVARYFGVTRGQVIKITRSSETAGRYVTYRLVV 211          
BLAST of Ggra8902.t1 vs. uniprot
Match: A0A1X6NM67 (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NM67_PORUM)

HSP 1 Score: 190 bits (483), Expect = 4.320e-58
Identity = 102/195 (52.31%), Postives = 135/195 (69.23%), Query Frame = 0
Query:    1 MLSDRGYAVLNTS-EDMNLSKDDFAAQMQTRNYNRESLTMLRQRRDNPADQIFVFFPDEERGKSVGVDVVSAITKRMETNGVNNALMVLQSGLTPTAKGAVEKMSASGRCLLEVFMENELLVNITHHQLVPKHELMSEDSKRALLRRYKLKESQLPRIQRSDPIARYYGLVPGNVVKITRPSETAGRYVTYRLCV 194
            ML DRGY + +TS +D+ ++  +F        Y+R+SLTM +Q R N  +QI+VFFP   R   +G   V    +R+   GV  A++VLQ  +TP+A  AV +M  + R  LE+F+ENELL+NIT H LVP+HE++S+  K ALL RYKLK+SQLPR+Q+ D +ARYYGL  G V+KITRPSETAGRY TYRLCV
Sbjct:   21 MLRDRGYVISDTSADDLGMTAAEFENNFTASGYSRDSLTMFKQLRANAGEQIYVFFP---RDVKLGKAAVDEYKRRLTNEGVARAIIVLQGPMTPSANKAVGEMEPAVR--LELFLENELLINITKHVLVPQHEVLSDTEKAALLARYKLKDSQLPRVQKKDAVARYYGLTAGQVMKITRPSETAGRYCTYRLCV 210          
BLAST of Ggra8902.t1 vs. uniprot
Match: A0A5J4YSN5 (DNA-directed RNA polymerases II and IV subunit 5A n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YSN5_PORPP)

HSP 1 Score: 188 bits (478), Expect = 2.320e-57
Identity = 98/194 (50.52%), Postives = 137/194 (70.62%), Query Frame = 0
Query:    1 MLSDRGYAVLNTSEDMNLSKDDFAAQMQTRNYNRESLTMLRQRRDNPADQIFVFFPDEERGKSVGVDVVSAITKRMETNGVNNALMVLQSGLTPTAKGAVEKMSASGRCLLEVFMENELLVNITHHQLVPKHELMSEDSKRALLRRYKLKESQLPRIQRSDPIARYYGLVPGNVVKITRPSETAGRYVTYRLCV 194
            ML DRGY VL+  +D+ +    F    +  N+  ++L +++ +R +   ++ VFFP +++   VGV +V  + +R+E   +++ ++VL + LTP+AK AV  MS+  R  LE+F +NELLVNIT H LVPKHE++++D KRALL  YKLKESQLPRIQ  DP+ARYYG+  G VVK+TRPSETAGRYVTYRL V
Sbjct:   21 MLRDRGYLVLDNEDDLGMPYQTFYNNFRESNFQDQALEIIKWKRSDVNAKVHVFFPQDQK---VGVKLVREVCERLELESIHHGIIVLLNSLTPSAKDAVSIMSSQYR--LELFAQNELLVNITQHVLVPKHEVLTDDQKRALLEMYKLKESQLPRIQTRDPVARYYGMTVGQVVKVTRPSETAGRYVTYRLVV 209          
BLAST of Ggra8902.t1 vs. uniprot
Match: A0A7S3UFC4 (Hypothetical protein n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A7S3UFC4_9CHLO)

HSP 1 Score: 187 bits (475), Expect = 6.820e-57
Identity = 102/198 (51.52%), Postives = 142/198 (71.72%), Query Frame = 0
Query:    1 MLSDRGYAVLNTSEDMNLSKDDFAAQMQTRNYN----RESLTMLRQRRDNPADQIFVFFPDEERGKSVGVDVVSAITKRMETNGVNNALMVLQSGLTPTAKGAVEKMSASGRCLLEVFMENELLVNITHHQLVPKHELMSEDSKRALLRRYKLKESQLPRIQRSDPIARYYGLVPGNVVKITRPSETAGRYVTYRLCV 194
            ML+DRGY V    ++++++++DF  Q     +      E LT+L  R+D  ++Q+FVFFP+E +   VGV  +    +RM++  V  A++V +S LTP AK  +++M    + ++E+F+E+ELLVNIT H LVPKH+L+SE+ KRALL RYK+KESQLPRIQ SDP+ARYYGL  G VV+I RPSETAGRYVTYRLC+
Sbjct:   21 MLNDRGYLV--PQKELDMTREDFV-QPPPEGFGLAPRSEDLTILVPRKDGSSEQMFVFFPEEVK---VGVKTIKTYAERMKSENVGRAILVAKSALTPFAKQCLQEMQP--KYIVELFLESELLVNITQHTLVPKHQLLSEEDKRALLSRYKVKESQLPRIQISDPVARYYGLQRGQVVRIVRPSETAGRYVTYRLCI 210          
BLAST of Ggra8902.t1 vs. uniprot
Match: A0A7J6M2T1 (DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=3 Tax=Perkinsus TaxID=28000 RepID=A0A7J6M2T1_PEROL)

HSP 1 Score: 184 bits (468), Expect = 8.590e-56
Identity = 102/197 (51.78%), Postives = 139/197 (70.56%), Query Frame = 0
Query:    1 MLSDRGYAVLNTSEDMNLSKDDFAAQ---MQTRNYNRESLTMLRQRRDNPADQIFVFFPDEERGKSVGVDVVSAITKRMETNGVNNALMVLQSGLTPTAKGAVEKMSASGRCLLEVFMENELLVNITHHQLVPKHELMSEDSKRALLRRYKLKESQLPRIQRSDPIARYYGLVPGNVVKITRPSETAGRYVTYRLCV 194
            +L DRGY V    + +N +K+ FA Q   +Q R   R  L +L  ++D+P+DQ+ VFFPDE   K VGV  +  +  +ME   ++ A++V+Q  LT  AK A+++  AS +  +EVF E+EL+VNITHH+LVP+H+ ++ + KR LL RYK+KE+QLPRIQ SDP+ARYYGL  G V+KI RPSETAGRYVTYRLCV
Sbjct:   23 LLQDRGYVV--AQKYLNETKESFAQQWNEIQERKGGRHDLIILVSKQDDPSDQLIVFFPDEN--KRVGVKPIRTLALKMEEQRLSRAILVVQQPLTAFAKTAIQE--ASPQMEIEVFNESELVVNITHHELVPEHKPLTAEEKRLLLERYKVKENQLPRIQSSDPVARYYGLKKGQVMKIIRPSETAGRYVTYRLCV 213          
The following BLAST results are available for this feature:
BLAST of Ggra8902.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J4K98.950e-12090.26DNA-directed RNA polymerases I, II, and III subuni... [more]
R7QDZ33.630e-8063.40RNA polymerase I, II, III common subunit n=1 Tax=C... [more]
A0A7S1ESI14.580e-6756.70Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A6T6JZI18.250e-6655.67Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
M2XGL83.850e-6455.15DNA-directed RNA polymerase II subunit E n=1 Tax=G... [more]
A0A7J7IF981.620e-6055.67Dna-directed RNA n=2 Tax=Cyanidiaceae TaxID=265316... [more]
A0A1X6NM674.320e-5852.31Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A5J4YSN52.320e-5750.52DNA-directed RNA polymerases II and IV subunit 5A ... [more]
A0A7S3UFC46.820e-5751.52Hypothetical protein n=1 Tax=Picocystis salinarum ... [more]
A0A7J6M2T18.590e-5651.78DNA-directed RNA polymerases I, II, and III subuni... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005571RNA polymerase, Rpb5, N-terminalPFAMPF03871RNA_pol_Rpb5_Ncoord: 1..76
e-value: 5.1E-13
score: 49.5
IPR035913RPB5-like RNA polymerase subunit superfamilyGENE3D3.90.940.20coord: 119..195
e-value: 2.5E-35
score: 121.9
IPR035913RPB5-like RNA polymerase subunit superfamilySUPERFAMILY55287RPB5-like RNA polymerase subunitcoord: 119..194
IPR000783RNA polymerase, subunit H/Rpb5 C-terminalPFAMPF01191RNA_pol_Rpb5_Ccoord: 121..193
e-value: 1.1E-32
score: 111.6
IPR014381DNA-directed RNA polymerase subunit Rpo5/Rpb5PIRSFPIRSF000747RPB5coord: 1..194
e-value: 4.8E-68
score: 226.6
IPR014381DNA-directed RNA polymerase subunit Rpo5/Rpb5PANTHERPTHR10535DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1coord: 1..194
IPR014381DNA-directed RNA polymerase subunit Rpo5/Rpb5HAMAPMF_00025RNApol_RpoH_RPB5coord: 121..194
score: 21.939625
IPR036710RNA polymerase Rpb5, N-terminal domain superfamilyGENE3D3.40.1340.10coord: 1..118
e-value: 1.3E-25
score: 92.1
IPR036710RNA polymerase Rpb5, N-terminal domain superfamilySUPERFAMILY53036Eukaryotic RPB5 N-terminal domaincoord: 1..122
NoneNo IPR availablePANTHERPTHR10535:SF0DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1coord: 1..194

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:755812..756399 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8902.t1Ggra8902.t1Gracilaria gracilis GNS1m malemRNAtig00000860_pilon 755812..756399 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8902.t1 ID=Ggra8902.t1|Name=Ggra8902.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=196bp
MLSDRGYAVLNTSEDMNLSKDDFAAQMQTRNYNRESLTMLRQRRDNPADQ
IFVFFPDEERGKSVGVDVVSAITKRMETNGVNNALMVLQSGLTPTAKGAV
EKMSASGRCLLEVFMENELLVNITHHQLVPKHELMSEDSKRALLRRYKLK
ESQLPRIQRSDPIARYYGLVPGNVVKITRPSETAGRYVTYRLCVA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005571RNA_pol_Rpb5_N
IPR035913RPB5-like_sf
IPR000783RNA_pol_subH/Rpb5_C
IPR014381Arch_Rpo5/euc_Rpb5
IPR036710RNA_pol_Rpb5_N_sf