Ggra8902.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8902.t1
Unique NameGgra8902.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length196
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:755812..756399 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705732.1
Preferred nameRPB5
PFAMsRNA_pol_Rpb5_C,RNA_pol_Rpb5_N
Max annot lvl2759|Eukaryota
KEGG rclassRC02795
KEGG koko:K03013
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko04623,ko05016,ko05169,map00230,map00240,map01100,map03020,map04623,map05016,map05169
KEGG ModuleM00180,M00181,M00182
GOsGO:0000418,GO:0000428,GO:0001054,GO:0003674,GO:0003700,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005665,GO:0005666,GO:0005730,GO:0005736,GO:0006139,GO:0006351,GO:0006353,GO:0006355,GO:0006360,GO:0006366,GO:0006383,GO:0006386,GO:0006399,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009304,GO:0009719,GO:0009725,GO:0009733,GO:0009889,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0016070,GO:0016591,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0030880,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0042221,GO:0042797,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044452,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0055029,GO:0060255,GO:0061695,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0090304,GO:0097659,GO:0097747,GO:0098781,GO:0140098,GO:0140110,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1903506,GO:1990234,GO:2000112,GO:2001141
Evalue7.72e-64
EggNOG OGsCOG2012@1|root,KOG3218@2759|Eukaryota
DescriptionDNA-directed 5'-3' RNA polymerase activity
COG categoryK
BRITEbr01611,ko00000,ko00001,ko00002,ko03021,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8902Ggra8902Gracilaria gracilis GNS1m malegenetig00000860_pilon 755812..756399 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8902.t1.stop1Ggra8902.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 755812..755814 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8902.t1.CDS1Ggra8902.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 755812..756399 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8902.t1.exon1Ggra8902.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 755812..756399 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8902.t1.start1Ggra8902.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 756397..756399 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8902.t1Ggra8902.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 755812..756399 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8902.t1 ID=Ggra8902.t1|Name=Ggra8902.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=196bp
MLSDRGYAVLNTSEDMNLSKDDFAAQMQTRNYNRESLTMLRQRRDNPADQ
IFVFFPDEERGKSVGVDVVSAITKRMETNGVNNALMVLQSGLTPTAKGAV
EKMSASGRCLLEVFMENELLVNITHHQLVPKHELMSEDSKRALLRRYKLK
ESQLPRIQRSDPIARYYGLVPGNVVKITRPSETAGRYVTYRLCVA*
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spliced messenger RNA

>Ggra8902.t1 ID=Ggra8902.t1|Name=Ggra8902.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=588bp|location=Sequence derived from alignment at tig00000860_pilon:755812..756399- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTTCCGACCGGGGATATGCTGTGTTGAACACGAGCGAGGATATGAA
CTTGAGCAAGGATGATTTCGCGGCACAGATGCAAACGAGGAACTACAATC
GTGAATCATTAACCATGTTGAGACAACGGCGAGATAATCCAGCGGACCAA
ATCTTTGTATTCTTCCCTGACGAAGAGCGAGGGAAATCTGTTGGTGTTGA
TGTGGTAAGCGCTATAACTAAGCGTATGGAGACCAATGGGGTCAACAATG
CCCTTATGGTGCTACAGAGTGGACTGACCCCAACTGCAAAAGGAGCAGTA
GAAAAGATGTCCGCTTCGGGCAGATGTTTATTGGAGGTATTCATGGAGAA
CGAGTTGCTTGTCAATATCACTCACCACCAGCTTGTTCCGAAGCACGAGT
TGATGTCTGAAGATTCAAAACGTGCGTTGCTGCGAAGGTACAAACTAAAA
GAAAGCCAGCTGCCGCGTATACAGCGATCCGACCCTATTGCACGTTACTA
CGGTCTGGTACCTGGCAATGTGGTCAAGATTACCAGACCTTCAGAAACGG
CAGGACGGTATGTCACTTACCGTTTATGTGTTGCATGA
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protein sequence of Ggra8902.t1

>Ggra8902.t1 ID=Ggra8902.t1|Name=Ggra8902.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=196bp
MLSDRGYAVLNTSEDMNLSKDDFAAQMQTRNYNRESLTMLRQRRDNPADQ
IFVFFPDEERGKSVGVDVVSAITKRMETNGVNNALMVLQSGLTPTAKGAV
EKMSASGRCLLEVFMENELLVNITHHQLVPKHELMSEDSKRALLRRYKLK
ESQLPRIQRSDPIARYYGLVPGNVVKITRPSETAGRYVTYRLCVA*
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mRNA from alignment at tig00000860_pilon:755812..756399-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8902.t1 ID=Ggra8902.t1|Name=Ggra8902.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=588bp|location=Sequence derived from alignment at tig00000860_pilon:755812..756399- (Gracilaria gracilis GNS1m male)
ATGCTTTCCGACCGGGGATATGCTGTGTTGAACACGAGCGAGGATATGAA
CTTGAGCAAGGATGATTTCGCGGCACAGATGCAAACGAGGAACTACAATC
GTGAATCATTAACCATGTTGAGACAACGGCGAGATAATCCAGCGGACCAA
ATCTTTGTATTCTTCCCTGACGAAGAGCGAGGGAAATCTGTTGGTGTTGA
TGTGGTAAGCGCTATAACTAAGCGTATGGAGACCAATGGGGTCAACAATG
CCCTTATGGTGCTACAGAGTGGACTGACCCCAACTGCAAAAGGAGCAGTA
GAAAAGATGTCCGCTTCGGGCAGATGTTTATTGGAGGTATTCATGGAGAA
CGAGTTGCTTGTCAATATCACTCACCACCAGCTTGTTCCGAAGCACGAGT
TGATGTCTGAAGATTCAAAACGTGCGTTGCTGCGAAGGTACAAACTAAAA
GAAAGCCAGCTGCCGCGTATACAGCGATCCGACCCTATTGCACGTTACTA
CGGTCTGGTACCTGGCAATGTGGTCAAGATTACCAGACCTTCAGAAACGG
CAGGACGGTATGTCACTTACCGTTTATGTGTTGCATGA
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Coding sequence (CDS) from alignment at tig00000860_pilon:755812..756399-

>Ggra8902.t1 ID=Ggra8902.t1|Name=Ggra8902.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=588bp|location=Sequence derived from alignment at tig00000860_pilon:755812..756399- (Gracilaria gracilis GNS1m male)
ATGCTTTCCGACCGGGGATATGCTGTGTTGAACACGAGCGAGGATATGAA
CTTGAGCAAGGATGATTTCGCGGCACAGATGCAAACGAGGAACTACAATC
GTGAATCATTAACCATGTTGAGACAACGGCGAGATAATCCAGCGGACCAA
ATCTTTGTATTCTTCCCTGACGAAGAGCGAGGGAAATCTGTTGGTGTTGA
TGTGGTAAGCGCTATAACTAAGCGTATGGAGACCAATGGGGTCAACAATG
CCCTTATGGTGCTACAGAGTGGACTGACCCCAACTGCAAAAGGAGCAGTA
GAAAAGATGTCCGCTTCGGGCAGATGTTTATTGGAGGTATTCATGGAGAA
CGAGTTGCTTGTCAATATCACTCACCACCAGCTTGTTCCGAAGCACGAGT
TGATGTCTGAAGATTCAAAACGTGCGTTGCTGCGAAGGTACAAACTAAAA
GAAAGCCAGCTGCCGCGTATACAGCGATCCGACCCTATTGCACGTTACTA
CGGTCTGGTACCTGGCAATGTGGTCAAGATTACCAGACCTTCAGAAACGG
CAGGACGGTATGTCACTTACCGTTTATGTGTTGCATGA
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