Ggra8896.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8896.t1
Unique NameGgra8896.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length431
Homology
BLAST of Ggra8896.t1 vs. uniprot
Match: A0A2V3J4J0 (Putative RNA-binding protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J4J0_9FLOR)

HSP 1 Score: 407 bits (1046), Expect = 4.630e-139
Identity = 209/261 (80.08%), Postives = 233/261 (89.27%), Query Frame = 0
Query:  170 EPAPDSEQLHRSHSHGEHPNVARPAENGNSADDAPIESDKHAQDADSAAQSNADGDGAELINLFVRNVARHVVEDQLVNLFSKFGKVDSAIVVRDPLSGECRGFGFVKVYTEDSAKAAIENLRDFEFEGRKISVERAKRNAPHQRTPGAYMGIDRRIRDRYAGIKRAREYDTGYGYGDPYVRRGSFRGRYGEPSRPRYEDRGWDSRRDHRPPYGRSPYEERDRVRRRYDEGPRYPPRDLDRDQRFRERQPPVPRESADDYI 430
            EP PD  Q  RS++     +  RP+ENG  ADDA   SDK AQ+ + AAQ +ADG    LINLFVRNVARHV+E+QLVNLFSK+GKV+SAIVVRDPLSGECRGFGFVK+YTE++AKAAIE+LRD++FEGRKISVERAKRNAPHQRTPGAYMGIDRRIRDRYAGIKRAREYDTGYGYGD YVRRGS+RGRYGEPSR RY++RGWD+RRDHRPPYGR PY+ER+RVRRRYDEGPRYPPRDLDR+QRFRERQPPVPRESADDYI
Sbjct:    4 EPEPD--QPDRSYAPDTDQDTDRPSENGAPADDARNMSDKDAQNVEGAAQQDADGTAPNLINLFVRNVARHVMEEQLVNLFSKYGKVESAIVVRDPLSGECRGFGFVKMYTEEAAKAAIESLRDYDFEGRKISVERAKRNAPHQRTPGAYMGIDRRIRDRYAGIKRAREYDTGYGYGDSYVRRGSYRGRYGEPSRHRYDERGWDARRDHRPPYGRPPYDERERVRRRYDEGPRYPPRDLDREQRFRERQPPVPRESADDYI 262          
BLAST of Ggra8896.t1 vs. uniprot
Match: R7Q5L8 (Transformer-SR ribonucleoprotein, putative n=2 Tax=Chondrus crispus TaxID=2769 RepID=R7Q5L8_CHOCR)

HSP 1 Score: 238 bits (607), Expect = 1.380e-71
Identity = 133/208 (63.94%), Postives = 160/208 (76.92%), Query Frame = 0
Query:  226 GAELINLFVRNVARHVVEDQLVNLFSKFGKVDSAIVVRDPLSGECRGFGFVKVYTEDSAKAAIENLRDFEFEGRKISVERAKRNAPHQRTPGAYMGIDRRIRDRYAGIKRAREYDTGYGYGDPYV--RRGSFRGRYGEPS-RPRYEDRGWDSRRDHRPPYGRSPYEERDRVRRRYDEGPRYPPRDLDRDQRFRERQPPVPRESADDYI 430
            G+EL+NLFVRNVA+HV+E+QLV LFSKFGKVDSA+VVRDP S ECRGFGFVK+  E+ A  AIE LRDFEFEGR+I+VE+AKR APH RTPG YMGIDRRIRDRY+G+KR+R+Y  GY +GDPY   RRG + GR  E   R RY+DRGWD R  +RP   R  Y+ R++ R RY+ G  Y  R    +QRFRER+ PVPRE ADD++
Sbjct:  143 GSELVNLFVRNVAKHVIEEQLVVLFSKFGKVDSAVVVRDPHSRECRGFGFVKMLHEEEAAQAIEALRDFEFEGRRIAVEKAKRKAPHSRTPGEYMGIDRRIRDRYSGMKRSRDYG-GYEHGDPYGMDRRGGYGGRRHESDGRGRYDDRGWDPR-GYRPQPMRPSYDGREQKRGRYEGGGGYGSRADAGEQRFREREAPVPREPADDFV 348          
BLAST of Ggra8896.t1 vs. uniprot
Match: G2Q7R8 (RRM domain-containing protein n=2 Tax=Chaetomiaceae TaxID=35718 RepID=G2Q7R8_MYCTT)

HSP 1 Score: 104 bits (260), Expect = 1.680e-21
Identity = 72/179 (40.22%), Postives = 99/179 (55.31%), Query Frame = 0
Query:  196 NGNSADDAPIESDKHAQDADSAAQSNADGDGAELINLFVRNVARHVVEDQLVNLFSKFGKVDSAIVVRDPLSGECRGFGFVKVYTEDSAKAAIENLRDFEFEGRKISVERAKRNAPHQRTPGAYMGIDRRI-RDRYAGIKRAREYDTGYG-YGDPYVRRGSFRGRYGEPSRPRYEDRGW 372
            NGN  D API+SD   ++ D A    +        NLFV  +   + E ++  LF K+G+V+   ++RDP SGE RGFGFVK+ T + A AA+E LR    EGR +++E+A+R+ P   TPG Y G  +R  R RY   +R      GYG YG  Y R  S+RG  G       +DRG+
Sbjct:   46 NGN--DRAPIKSDSGNKEDDGATNPGS--------NLFVTGIHPRLEESEITRLFEKYGEVEKCQIMRDPHSGESRGFGFVKMVTSEQADAAMEGLRGEVIEGRTLNIEKARRSRPRTPTPGKYFGPPKRDPRSRYDDRRRG-----GYGGYGGGYGRDDSYRGGRGYXX----DDRGY 205          
BLAST of Ggra8896.t1 vs. uniprot
Match: G2QS49 (RRM domain-containing protein n=2 Tax=Thermothielavioides terrestris TaxID=2587410 RepID=G2QS49_THETT)

HSP 1 Score: 100 bits (248), Expect = 7.310e-20
Identity = 66/164 (40.24%), Postives = 93/164 (56.71%), Query Frame = 0
Query:  196 NGNSADDAPIESDKHAQDADSAAQSNADGDGAELINLFVRNVARHVVEDQLVNLFSKFGKVDSAIVVRDPLSGECRGFGFVKVYTEDSAKAAIENLRDFEFEGRKISVERAKRNAPHQRTPGAYMGIDRRIR--DRYAGIKRAREYDTGYGYGDPYVRRGSFRG 357
            NGN  D AP+++D  A++ +SA    +        NLFV  +   + E ++  LF K+G+V+   ++RDP SGE RGFGFVK+ T + A AA+E LR    EGR +++E+A+R+ P   TPG Y G  +R     RY   +R   Y  GYG  D Y  RG  RG
Sbjct:   47 NGN--DRAPLKNDGGAKEDESAVNPGS--------NLFVTGIHPRIEESEITRLFEKYGEVEKCQIMRDPHSGESRGFGFVKMMTSEQADAAMEGLRGEIIEGRTLNIEKARRSRPRTPTPGKYFGPPKRDPRGGRYDDRRRG-AYGGGYGREDSY--RGGPRG 197          
BLAST of Ggra8896.t1 vs. uniprot
Match: B2B7H0 (Podospora anserina S mat+ genomic DNA chromosome 2, supercontig 2 n=2 Tax=Podospora anserina (strain S / ATCC MYA-4624 / DSM 980 / FGSC 10383) TaxID=515849 RepID=B2B7H0_PODAN)

HSP 1 Score: 100 bits (248), Expect = 9.370e-20
Identity = 70/183 (38.25%), Postives = 99/183 (54.10%), Query Frame = 0
Query:  196 NGNSADDAPIESDKHAQDADSAAQSNADGDGAELINLFVRNVARHVVEDQLVNLFSKFGKVDSAIVVRDPLSGECRGFGFVKVYTEDSAKAAIENLRDFEFEGRKISVERAKRNAPHQRTPGAYMGIDRRI--RDRYAGIKRAREYDT-----GYGYGDPYVRRGSFRGRYGEPSRPRYEDRG 371
            NGN  D AP++SD ++Q  +  A +          NLFV  +   + E ++  LF K+G+V+   +++DP +GE RGFGFVK+ T + A+AAI+ LR    EGR +S+E+A+R  P   TPG Y G  +R   R R+   +R   Y       GY  GD   R GS RG  G+    R  DRG
Sbjct:   47 NGN--DRAPVKSDNNSQKGEDGAVNPGS-------NLFVTGIHPRLEEAEVTRLFEKYGEVEKCQIMKDPQTGESRGFGFVKMVTSEMAEAAIDGLRGEVIEGRTLSIEKARRARPRTPTPGKYFGPPKREDGRGRFDDRRRGGGYXXXXXXXGYRGGDDSYRGGSHRGYRGDD---RAYDRG 217          
BLAST of Ggra8896.t1 vs. uniprot
Match: A0A2T2ZV95 (RRM domain-containing protein n=2 Tax=Diaporthales TaxID=5114 RepID=A0A2T2ZV95_9PEZI)

HSP 1 Score: 95.9 bits (237), Expect = 1.030e-19
Identity = 55/130 (42.31%), Postives = 75/130 (57.69%), Query Frame = 0
Query:  192 RPAENGNSADDAPIESDKHAQDADSAAQSNADGDGAELINLFVRNVARHVVEDQLVNLFSKFGKVDSAIVVRDPLSGECRGFGFVKVYTEDSAKAAIENLRDFEFEGRKISVERAKRNAPHQRTPGAYMG 321
            R A  GN  D AP+++D   +D D A    +        NLFV  +   + ED++  LF K+G V+   ++RDP + E RGFGFVK+ T D A AA E L+  EFEGR +S+E+A+R  P   TPG Y G
Sbjct:   44 RSASPGN--DRAPVKNDDRDRDDDGAVNPGS--------NLFVTGIHPRLTEDEVTRLFQKYGTVEKCQIMRDPHTKESRGFGFVKMVTSDEADAAKEGLQGKEFEGRTLSIEKARRARPRTPTPGKYFG 163          
BLAST of Ggra8896.t1 vs. uniprot
Match: transformer-SR ribonucleoprotein n=1 Tax=Geosmithia morbida TaxID=1094350 RepID=UPI0015C3847D (transformer-SR ribonucleoprotein n=1 Tax=Geosmithia morbida TaxID=1094350 RepID=UPI0015C3847D)

HSP 1 Score: 95.5 bits (236), Expect = 1.690e-19
Identity = 52/125 (41.60%), Postives = 74/125 (59.20%), Query Frame = 0
Query:  201 DDAPIESDKHAQDADSAAQSNADGDGAELINLFVRNVARHVVEDQLVNLFSKFGKVDSAIVVRDPLSGECRGFGFVKVYTEDSAKAAIENLRDFEFEGRKISVERAKRNAPHQRTPGAYMGIDRR 325
            D AP ES    +D D A    +        NLFV  +   +VE++++ +F K+G V+   ++RDP S E RGFGFVK+ T D A+AA E L+  +FEGR +S+E+A+R  P   TPG Y G  +R
Sbjct:   54 DSAPKESGPKDEDDDGAINPGS--------NLFVTGIHPRLVEEEIIKMFEKYGDVEKCQIMRDPHSKESRGFGFVKMVTPDQAEAAKEGLQGEQFEGRTLSIEKARRARPRTPTPGKYFGPPKR 170          
BLAST of Ggra8896.t1 vs. uniprot
Match: G0SE27 (RRM domain-containing protein n=1 Tax=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) TaxID=759272 RepID=G0SE27_CHATD)

HSP 1 Score: 98.2 bits (243), Expect = 4.520e-19
Identity = 60/159 (37.74%), Postives = 88/159 (55.35%), Query Frame = 0
Query:  196 NGNSADDAPIESDKHAQDADSAAQSNADGDGAELINLFVRNVARHVVEDQLVNLFSKFGKVDSAIVVRDPLSGECRGFGFVKVYTEDSAKAAIENLRDFEFEGRKISVERAKRNAPHQRTPGAYMG--------IDRRIRDRYAGIKRAREYDTGYGYG 346
            NGN  D AP +S+   ++ D++A +          NLFV  +   + E ++  LF K+G+V+   ++RDP +GE RGFGFVK+ T + A+AA+E L+    EGR +++E+A+R+ P   TPG Y G         D R R  Y G  R   Y  G GYG
Sbjct:   47 NGN--DRAPTKSENAPKEEDNSAVNPGS-------NLFVTGIHPRLEESEITRLFEKYGEVEKCQIMRDPHTGESRGFGFVKMMTSEQAEAAMEGLKGEIIEGRTLNIEKARRSRPRTPTPGKYFGPPKRDPRRYDDRRRGGYGGYGRDDSYRGGRGYG 196          
BLAST of Ggra8896.t1 vs. uniprot
Match: A0A3N4LXC4 (RNA-binding domain-containing protein n=1 Tax=Terfezia boudieri ATCC MYA-4762 TaxID=1051890 RepID=A0A3N4LXC4_9PEZI)

HSP 1 Score: 97.4 bits (241), Expect = 5.460e-19
Identity = 67/177 (37.85%), Postives = 94/177 (53.11%), Query Frame = 0
Query:  215 DSAAQSNADGDGAEL----INLFVRNVARHVVEDQLVNLFSKFGKVDSAIVVRDPLSGECRGFGFVKVYTEDSAKAAIENLRDFEFEGRKISVERAKRNAPHQRTPGAYMGIDRRIRDRYAGIKRA--REYDT----GYGYGDPYVRRGSFRGRYGEPSRPRYEDRGWDSRRDHRPP 381
            D+A+ ++A G+GAE      NLFV  +   + E+ +  LFSK+G+V+   ++ DP + E RGFGFVK+ T + A AA E L+  EFEGR +S+E+A+RN P   TPG Y G  +R  D      R     YD     G  +G           RY +    RY  R  DSR ++ PP
Sbjct:   61 DAASTTSAQGNGAEARNTGTNLFVTGIHPRLTEEDVTRLFSKYGEVEKCQIMVDPHTKESRGFGFVKMATLEQADAAKEGLQSEEFEGRVLSIEKARRNRPRTPTPGKYFGPPKRADDFRRAPPRGGYSSYDDRRYGGRSHGSXXXXXXXXSSRYDDRGGDRYY-RSRDSRDEYAPP 236          
BLAST of Ggra8896.t1 vs. uniprot
Match: A0A517L628 (RRM domain-containing protein n=4 Tax=Venturia TaxID=5024 RepID=A0A517L628_9PEZI)

HSP 1 Score: 95.9 bits (237), Expect = 2.840e-18
Identity = 52/118 (44.07%), Postives = 75/118 (63.56%), Query Frame = 0
Query:  204 PIESDKHAQDADSAAQSNADGDGAELINLFVRNVARHVVEDQLVNLFSKFGKVDSAIVVRDPLSGECRGFGFVKVYTEDSAKAAIENLRDFEFEGRKISVERAKRNAPHQRTPGAYMG 321
            P   D H   +DS  + + +G      NLFV  +A+ V E+ L ++F K+G+V +A ++RDP SG+ RGFGFVK  + + A+AAIE L  F+ EGR +SVE+A+R+ P   TPG Y G
Sbjct:   52 PRGGDYHNGQSDSRREQSNEGS-----NLFVTGLAQKVKEEDLRDVFGKYGEVQNASIMRDPHSGDSRGFGFVKFVSVEHAEAAIEALHGFDLEGRNMSVEKARRSRPRTPTPGKYHG 164          
The following BLAST results are available for this feature:
BLAST of Ggra8896.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J4J04.630e-13980.08Putative RNA-binding protein n=1 Tax=Gracilariopsi... [more]
R7Q5L81.380e-7163.94Transformer-SR ribonucleoprotein, putative n=2 Tax... [more]
G2Q7R81.680e-2140.22RRM domain-containing protein n=2 Tax=Chaetomiacea... [more]
G2QS497.310e-2040.24RRM domain-containing protein n=2 Tax=Thermothiela... [more]
B2B7H09.370e-2038.25Podospora anserina S mat+ genomic DNA chromosome 2... [more]
A0A2T2ZV951.030e-1942.31RRM domain-containing protein n=2 Tax=Diaporthales... [more]
transformer-SR ribonucleoprotein n=1 Tax=Geosmithia morbida TaxID=1094350 RepID=UPI0015C3847D1.690e-1941.60transformer-SR ribonucleoprotein n=1 Tax=Geosmithi... [more]
G0SE274.520e-1937.74RRM domain-containing protein n=1 Tax=Chaetomium t... [more]
A0A3N4LXC45.460e-1937.85RNA-binding domain-containing protein n=1 Tax=Terf... [more]
A0A517L6282.840e-1844.07RRM domain-containing protein n=4 Tax=Venturia Tax... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 231..304
e-value: 4.3E-23
score: 92.7
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 232..301
e-value: 1.7E-16
score: 59.8
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 230..308
score: 18.205673
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 192..321
e-value: 4.7E-25
score: 90.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 371..430
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..222
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 8..120
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 131..189
NoneNo IPR availablePANTHERPTHR48034TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATEDcoord: 200..397
NoneNo IPR availablePANTHERPTHR48034:SF6TRANSFORMER-2 SEX-DETERMINING PROTEINcoord: 200..397
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 226..328

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:678296..679723 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8896.t1Ggra8896.t1Gracilaria gracilis GNS1m malemRNAtig00000860_pilon 678296..679723 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8896.t1 ID=Ggra8896.t1|Name=Ggra8896.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=431bp
MTVPYEERAASPRRDAPQEKDPYPRKGHDREPHRYHHERADHPRRDNQPR
YYARGSDDRPSPERRHPSAPDPYHSDRDQRSPDRPNHRDRDDDPPHPADD
RQSPPTRPDDVPHRPPHPDHGQNGNRGPVVDSDPDSDRNDRRYEPPHDAI
EPRGRDERADHHEHPPSAPEPAPDSEQLHRSHSHGEHPNVARPAENGNSA
DDAPIESDKHAQDADSAAQSNADGDGAELINLFVRNVARHVVEDQLVNLF
SKFGKVDSAIVVRDPLSGECRGFGFVKVYTEDSAKAAIENLRDFEFEGRK
ISVERAKRNAPHQRTPGAYMGIDRRIRDRYAGIKRAREYDTGYGYGDPYV
RRGSFRGRYGEPSRPRYEDRGWDSRRDHRPPYGRSPYEERDRVRRRYDEG
PRYPPRDLDRDQRFRERQPPVPRESADDYI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf