Ggra8896.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8896.t1
Unique NameGgra8896.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length431
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:678296..679723 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog78579.XP_003662172.1
PFAMsRRM_1
Max annot lvl4751|Fungi
KEGG koko:K12897
KEGG Pathwayko03040,map03040
GOsGO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0006325,GO:0006464,GO:0006473,GO:0006475,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009987,GO:0016043,GO:0016569,GO:0016570,GO:0016573,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0043543,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0051276,GO:0071704,GO:0071840,GO:0097159,GO:1901363,GO:1901564
Evalue7.31e-22
EggNOG OGs2BE8F@1|root,2S146@2759|Eukaryota,3A5W1@33154|Opisthokonta,3P611@4751|Fungi,3QSTR@4890|Ascomycota,212CB@147550|Sordariomycetes,3U7G8@5139|Sordariales,3H9MR@35718|Chaetomiaceae
DescriptionRNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
COG categoryA
BRITEko00000,ko00001,ko01009,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8896Ggra8896Gracilaria gracilis GNS1m malegenetig00000860_pilon 678296..679723 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8896.t1Ggra8896.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 678296..679723 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8896.t1.start1Ggra8896.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 678296..678298 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8896.t1.CDS1Ggra8896.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 678296..679051 +
Ggra8896.t1.CDS2Ggra8896.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000860_pilon 679187..679723 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8896.t1.exon1Ggra8896.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 678296..679051 +
Ggra8896.t1.exon2Ggra8896.t1.exon2Gracilaria gracilis GNS1m maleexontig00000860_pilon 679187..679723 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8896.t1.intron1Ggra8896.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000860_pilon 679052..679186 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8896.t1.stop1Ggra8896.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 679721..679723 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8896.t1 ID=Ggra8896.t1|Name=Ggra8896.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=431bp
MTVPYEERAASPRRDAPQEKDPYPRKGHDREPHRYHHERADHPRRDNQPR
YYARGSDDRPSPERRHPSAPDPYHSDRDQRSPDRPNHRDRDDDPPHPADD
RQSPPTRPDDVPHRPPHPDHGQNGNRGPVVDSDPDSDRNDRRYEPPHDAI
EPRGRDERADHHEHPPSAPEPAPDSEQLHRSHSHGEHPNVARPAENGNSA
DDAPIESDKHAQDADSAAQSNADGDGAELINLFVRNVARHVVEDQLVNLF
SKFGKVDSAIVVRDPLSGECRGFGFVKVYTEDSAKAAIENLRDFEFEGRK
ISVERAKRNAPHQRTPGAYMGIDRRIRDRYAGIKRAREYDTGYGYGDPYV
RRGSFRGRYGEPSRPRYEDRGWDSRRDHRPPYGRSPYEERDRVRRRYDEG
PRYPPRDLDRDQRFRERQPPVPRESADDYI*
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spliced messenger RNA

>Ggra8896.t1 ID=Ggra8896.t1|Name=Ggra8896.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1293bp|location=Sequence derived from alignment at tig00000860_pilon:678296..679723+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGTGCCGTACGAGGAACGAGCcgcctctccgcgccgcgacgcgcc
gcAAGAGAAAGACCCTTACCCTCGCAAGGGTCACGACCGAGAACCTCACC
GTTACCACCACGAGCGCGCCGACCACCCCCGTCGCGACAACCAACCCCGC
TACTATGCGCGCGGATCTGACGACCGCCCCTCCCCCGAGCGCCGCCACCC
TTCCGCCCCCGACCCCTACCACTCCGACCGCGACCAGCGCTCGCCAGACC
GCCCCAACCATCGCGACCGCGACGACGACCCTCCCCACCCCGCCGATGAC
CGTCAGTCGCCTCCCACTCGCCCCGACGACGTCCCCCACCGGCCGCCCCA
CCCCGACCATGGCCAGAATGGTAACCGAGGTCCCGTAGTCGACAGTGACC
CCGACAGCGACCGCAACGACCGCCGTTATGAGCCGCCCCATGATGCCATC
GAGCCCCGTGGACGCGACGAGAGAGCTGATCACCATGAGCATCCTCCCAG
TGCTCCGGAGCCTGCTCCCGATTCAGAGCAGCTCCACCGATCACACTCCC
ACGGTGAACACCCCAACGTGGCGCGGCCTGCAGAGAACGGCAACTCCGCT
GACGATGCCCCCATAGAAAGCGACAAACATGCACAAgacgccgactctgc
cgctcagtcaaacgctgacggtgacggtgccgAACTCATCAACTTGTTTG
TGCGTAATGTCGCCAGGCACGTCGTGGAGGACCAGTTGGTCAACTTGTTT
AGTAAGTTTGGCAAGGTTGATTCTGCGATTGTTGTGCGTGATCCTCTTTC
AGGAGAGTGTCGTGGATTCGGGTTCGTCAAAGTGTACACAGAAGACTCAG
CGAAAGCCGCTATAGAGAATCTGCGTGATTTCGAATTTGAAGGTCGTAAA
ATATCTGTTGAGAGAGCAAAGAGAAATGCACCGCATCAGAGAACGCCGGG
AGCGTATATGGGTATTGATCGACGAATTCGAGACAGGTATGCCGGCATTA
AACGTGCGCGAGAGTATGATACAGGCTATGGCTACGGTGATCCATACGTG
AGAAGAGGCTCATTTAGAGGGAGATATGGTGAACCTTCGAGACCCAGATA
TGAAGATCGCGGTTGGGATTCAAGACGTGATCACCGCCCTCCATATGGAC
GTTCTCCATATGAAGAACGTGATCGAGTTAGAAGGAGGTATGATGAAGGT
CCTCGCTATCCACCTCGAGACTTAGATCGCGACCAACGTTTTCGAGAACG
CCAGCCTCCAGTGCCACGGGAATCGGCGGATGATTACATATGA
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protein sequence of Ggra8896.t1

>Ggra8896.t1 ID=Ggra8896.t1|Name=Ggra8896.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=431bp
MTVPYEERAASPRRDAPQEKDPYPRKGHDREPHRYHHERADHPRRDNQPR
YYARGSDDRPSPERRHPSAPDPYHSDRDQRSPDRPNHRDRDDDPPHPADD
RQSPPTRPDDVPHRPPHPDHGQNGNRGPVVDSDPDSDRNDRRYEPPHDAI
EPRGRDERADHHEHPPSAPEPAPDSEQLHRSHSHGEHPNVARPAENGNSA
DDAPIESDKHAQDADSAAQSNADGDGAELINLFVRNVARHVVEDQLVNLF
SKFGKVDSAIVVRDPLSGECRGFGFVKVYTEDSAKAAIENLRDFEFEGRK
ISVERAKRNAPHQRTPGAYMGIDRRIRDRYAGIKRAREYDTGYGYGDPYV
RRGSFRGRYGEPSRPRYEDRGWDSRRDHRPPYGRSPYEERDRVRRRYDEG
PRYPPRDLDRDQRFRERQPPVPRESADDYI*
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mRNA from alignment at tig00000860_pilon:678296..679723+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8896.t1 ID=Ggra8896.t1|Name=Ggra8896.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1428bp|location=Sequence derived from alignment at tig00000860_pilon:678296..679723+ (Gracilaria gracilis GNS1m male)
ATGACCGTGCCGTACGAGGAACGAGCcgcctctccgcgccgcgacgcgcc
gcAAGAGAAAGACCCTTACCCTCGCAAGGGTCACGACCGAGAACCTCACC
GTTACCACCACGAGCGCGCCGACCACCCCCGTCGCGACAACCAACCCCGC
TACTATGCGCGCGGATCTGACGACCGCCCCTCCCCCGAGCGCCGCCACCC
TTCCGCCCCCGACCCCTACCACTCCGACCGCGACCAGCGCTCGCCAGACC
GCCCCAACCATCGCGACCGCGACGACGACCCTCCCCACCCCGCCGATGAC
CGTCAGTCGCCTCCCACTCGCCCCGACGACGTCCCCCACCGGCCGCCCCA
CCCCGACCATGGCCAGAATGGTAACCGAGGTCCCGTAGTCGACAGTGACC
CCGACAGCGACCGCAACGACCGCCGTTATGAGCCGCCCCATGATGCCATC
GAGCCCCGTGGACGCGACGAGAGAGCTGATCACCATGAGCATCCTCCCAG
TGCTCCGGAGCCTGCTCCCGATTCAGAGCAGCTCCACCGATCACACTCCC
ACGGTGAACACCCCAACGTGGCGCGGCCTGCAGAGAACGGCAACTCCGCT
GACGATGCCCCCATAGAAAGCGACAAACATGCACAAgacgccgactctgc
cgctcagtcaaacgctgacggtgacggtgccgAACTCATCAACTTGTTTG
TGCGTAATGTCGCCAGGCACGTCGTGGAGGACCAGTTGGTCAACTTGTTT
AGTAAGGTAAGGCATTGGCTCGTAGAGCTCTGCAACTTTTCACTTATCCG
ACACTGCTTCTATATTCACAGTATTTACTAACATTGCTTCTCTGTGCCAT
GGGCATCACCCCGCCCCTCACTGACATGACAACTTATTCAGTTTGGCAAG
GTTGATTCTGCGATTGTTGTGCGTGATCCTCTTTCAGGAGAGTGTCGTGG
ATTCGGGTTCGTCAAAGTGTACACAGAAGACTCAGCGAAAGCCGCTATAG
AGAATCTGCGTGATTTCGAATTTGAAGGTCGTAAAATATCTGTTGAGAGA
GCAAAGAGAAATGCACCGCATCAGAGAACGCCGGGAGCGTATATGGGTAT
TGATCGACGAATTCGAGACAGGTATGCCGGCATTAAACGTGCGCGAGAGT
ATGATACAGGCTATGGCTACGGTGATCCATACGTGAGAAGAGGCTCATTT
AGAGGGAGATATGGTGAACCTTCGAGACCCAGATATGAAGATCGCGGTTG
GGATTCAAGACGTGATCACCGCCCTCCATATGGACGTTCTCCATATGAAG
AACGTGATCGAGTTAGAAGGAGGTATGATGAAGGTCCTCGCTATCCACCT
CGAGACTTAGATCGCGACCAACGTTTTCGAGAACGCCAGCCTCCAGTGCC
ACGGGAATCGGCGGATGATTACATATGA
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Coding sequence (CDS) from alignment at tig00000860_pilon:678296..679723+

>Ggra8896.t1 ID=Ggra8896.t1|Name=Ggra8896.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1293bp|location=Sequence derived from alignment at tig00000860_pilon:678296..679723+ (Gracilaria gracilis GNS1m male)
ATGACCGTGCCGTACGAGGAACGAGCcgcctctccgcgccgcgacgcgcc
gcAAGAGAAAGACCCTTACCCTCGCAAGGGTCACGACCGAGAACCTCACC
GTTACCACCACGAGCGCGCCGACCACCCCCGTCGCGACAACCAACCCCGC
TACTATGCGCGCGGATCTGACGACCGCCCCTCCCCCGAGCGCCGCCACCC
TTCCGCCCCCGACCCCTACCACTCCGACCGCGACCAGCGCTCGCCAGACC
GCCCCAACCATCGCGACCGCGACGACGACCCTCCCCACCCCGCCGATGAC
CGTCAGTCGCCTCCCACTCGCCCCGACGACGTCCCCCACCGGCCGCCCCA
CCCCGACCATGGCCAGAATGGTAACCGAGGTCCCGTAGTCGACAGTGACC
CCGACAGCGACCGCAACGACCGCCGTTATGAGCCGCCCCATGATGCCATC
GAGCCCCGTGGACGCGACGAGAGAGCTGATCACCATGAGCATCCTCCCAG
TGCTCCGGAGCCTGCTCCCGATTCAGAGCAGCTCCACCGATCACACTCCC
ACGGTGAACACCCCAACGTGGCGCGGCCTGCAGAGAACGGCAACTCCGCT
GACGATGCCCCCATAGAAAGCGACAAACATGCACAAgacgccgactctgc
cgctcagtcaaacgctgacggtgacggtgccgAACTCATCAACTTGTTTG
TGCGTAATGTCGCCAGGCACGTCGTGGAGGACCAGTTGGTCAACTTGTTT
AGTAAGTTTGGCAAGGTTGATTCTGCGATTGTTGTGCGTGATCCTCTTTC
AGGAGAGTGTCGTGGATTCGGGTTCGTCAAAGTGTACACAGAAGACTCAG
CGAAAGCCGCTATAGAGAATCTGCGTGATTTCGAATTTGAAGGTCGTAAA
ATATCTGTTGAGAGAGCAAAGAGAAATGCACCGCATCAGAGAACGCCGGG
AGCGTATATGGGTATTGATCGACGAATTCGAGACAGGTATGCCGGCATTA
AACGTGCGCGAGAGTATGATACAGGCTATGGCTACGGTGATCCATACGTG
AGAAGAGGCTCATTTAGAGGGAGATATGGTGAACCTTCGAGACCCAGATA
TGAAGATCGCGGTTGGGATTCAAGACGTGATCACCGCCCTCCATATGGAC
GTTCTCCATATGAAGAACGTGATCGAGTTAGAAGGAGGTATGATGAAGGT
CCTCGCTATCCACCTCGAGACTTAGATCGCGACCAACGTTTTCGAGAACG
CCAGCCTCCAGTGCCACGGGAATCGGCGGATGATTACATATGA
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