Ggra8529.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ggra8529.t1
Unique Name	Ggra8529.t1
Type	polypeptide
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	564

Homology

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BLAST of Ggra8529.t1 vs. uniprot
Match: A0A2V3IKQ8 (Vesicle-associated protein 1-2 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IKQ8_9FLOR)

HSP 1 Score: 135 bits (339), Expect = 7.940e-32
Identity = 85/190 (44.74%), Postives = 114/190 (60.00%), Query Frame = 0

Query:    1 MDLIHADKRVLCFPAGPLLPGSTTSDTLTISNAITTFVAFKVKATNPYRYIVRPSIGVIPPHSSSQIVIDLQPTSKQPEPGPSSDKFMLSVVEAPELQDVELPSDFWTHHEQNHATRYVKFNVKFVRKPP-TSPSLAPSGLSLTGAEAAVRNGGLSPLS--TSRTSSPHLGS--PDIFHPSLPPLSDTAP 185
            MDL+  D++   F       GS  SDTLT++N  TT +AFKVK TN  RYIV+P+ G+I P  S++I I LQPT+  PE G S DKFML V+EAPEL D  LP+D+W  HE + A R VKF V FV  P   SP+  PS   +TG++    +  L+P S  ++ T+ PH     P + H + P  + +AP
Sbjct:   21 MDLVTVDRQTFRFTVNSAPTGSLISDTLTVTNVATTHIAFKVKTTNQERYIVKPNAGLIAPRGSAEIYIALQPTTVLPELGSSRDKFMLRVIEAPELDDT-LPADYWQTHETDAAVRDVKFRVAFVTDPHFPSPTNQPS---VTGSDVTPTSPQLAPASAPSAPTAVPHPRDLPPSVPHRTQPDPASSAP 206

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BLAST of Ggra8529.t1 vs. uniprot
Match: VAP14 (Vesicle-associated protein 1-4 n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=VAP14_ARATH)

HSP 1 Score: 86.3 bits (212), Expect = 4.200e-14
Identity = 84/296 (28.38%), Postives = 131/296 (44.26%), Query Frame = 0

Query:    2 DLIHADKRVLCFPAGPLLPGSTTSDTLTISNAITTFVAFKVKATNPYRYIVRPSIGVIPPHSSSQIVIDLQPTSKQPEPGPSSDK--FMLSVVEAPELQDVELPSDFWTHHEQNHATRYVKFNVKFVRKPPTSPSLAPSGLSL-TGAEAAVRNGGLSPLSTSRTSSPHLGSPDIFHPSLPPLSDTAPPQPRLVSHLIEVDKRVLRFPAGRLKSGSSHSDTLGGSASDNLTVSNVTTTFVAFKVNTTNLNRYIVRPNKGVIPPHGSSQISIGLQPASKPPKPGPSRDK--FMVNVIE 292
            +L+  D   + FP      GS +   L ++N    +VAFK + T P  Y V+PS+GV+ P SS ++++ +Q   + P      DK  F   VVE P   D E+ S+ ++  E  H      F + +V  PP   S    GL   +   A+V + G +   +     P +G  D+                R+   L+ +D   ++FP             L    S +L ++N T  +VAFK  TTN  +Y VRPN GV+ P  S ++ + +Q   + P     RDK  F   V+E
Sbjct:    5 ELLTFDHVDIRFPIELNKQGSCS---LNLTNKTDNYVAFKAQTTKPKMYCVKPSVGVVLPRSSCEVLVVMQALKEAPADRQCKDKLLFQCKVVE-PGTMDKEVTSEMFSK-EAGHRVEETIFKIIYVA-PPQPQSPVQEGLEDGSSPSASVSDKGNA---SEVFVGPSVGIVDLI---------------RMSDELLIIDPVDVQFPI-----------ELNKKVSCSLNLTNKTENYVAFKAKTTNAKKYYVRPNVGVVLPRSSCEVLVIMQALKEAPADMQCRDKLLFQCKVVE 265

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BLAST of Ggra8529.t1 vs. uniprot
Match: F4I818 (Vesicle-associated protein 1-4 n=11 Tax=Arabidopsis thaliana TaxID=3702 RepID=F4I818_ARATH)

HSP 1 Score: 86.3 bits (212), Expect = 4.810e-14
Identity = 84/296 (28.38%), Postives = 131/296 (44.26%), Query Frame = 0

Query:    2 DLIHADKRVLCFPAGPLLPGSTTSDTLTISNAITTFVAFKVKATNPYRYIVRPSIGVIPPHSSSQIVIDLQPTSKQPEPGPSSDK--FMLSVVEAPELQDVELPSDFWTHHEQNHATRYVKFNVKFVRKPPTSPSLAPSGLSL-TGAEAAVRNGGLSPLSTSRTSSPHLGSPDIFHPSLPPLSDTAPPQPRLVSHLIEVDKRVLRFPAGRLKSGSSHSDTLGGSASDNLTVSNVTTTFVAFKVNTTNLNRYIVRPNKGVIPPHGSSQISIGLQPASKPPKPGPSRDK--FMVNVIE 292
            +L+  D   + FP      GS +   L ++N    +VAFK + T P  Y V+PS+GV+ P SS ++++ +Q   + P      DK  F   VVE P   D E+ S+ ++  E  H      F + +V  PP   S    GL   +   A+V + G +   +     P +G  D+                R+   L+ +D   ++FP             L    S +L ++N T  +VAFK  TTN  +Y VRPN GV+ P  S ++ + +Q   + P     RDK  F   V+E
Sbjct:    5 ELLTFDHVDIRFPIELNKQGSCS---LNLTNKTDNYVAFKAQTTKPKMYCVKPSVGVVLPRSSCEVLVVMQALKEAPADRQCKDKLLFQCKVVE-PGTMDKEVTSEMFSK-EAGHRVEETIFKIIYVA-PPQPQSPVQEGLEDGSSPSASVSDKGNA---SEVFVGPSVGIVDLI---------------RMSDELLIIDPVDVQFPI-----------ELNKKVSCSLNLTNKTENYVAFKAKTTNAKKYYVRPNVGVVLPRSSCEVLVIMQALKEAPADMQCRDKLLFQCKVVE 265

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BLAST of Ggra8529.t1 vs. uniprot
Match: A0A7G2E201 ((thale cress) hypothetical protein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=A0A7G2E201_ARATH)

HSP 1 Score: 79.3 bits (194), Expect = 4.090e-12
Identity = 93/335 (27.76%), Postives = 138/335 (41.19%), Query Frame = 0

Query:    2 DLIHADKRVLCFPAGPLLPGSTTSDTLTISNAITTFVAFKVKATNPYRYIVRPSIGVIPPHSSSQIV-IDLQPTSKQPEPGPSSDK--FMLSVVEAPELQDVELPSDFWTHHEQNHATRYVKFNVKFVRKPPTSPSLAPSGLSL-TGAEAAVRNGGLSPLSTSRTSSPHLGSPDIFHPSLPPLSDTAPPQPRLVSHLIEVDKRVLRFPAGRLKSGSSHSDTLGGSASDNLTVSNVTTTFVAFKVNTTNLNRYIVRPNKGVIPPHGSSQISIGLQPASKPPKPGPSRDK--FMVNVIEAHELTDAELPPNFWTHHKHYDSVKGIKLAVVFSGHQPS 330
            +L+  D   + FP      GS +   L ++N    +VAFK K T P  Y V+PS+GV+ P SS +++ +   P  +Q       DK  F   VVE P   D E+ S+ ++  E  H      F + +V  PP   S    GL   +   A+V + G +   +     P +G  D+                R+   L+ +D   ++FP                S S NLT  N T  +VAFK  TTN  +Y VRPN GV+ P  S ++ + +Q   + P     RDK  F   V+E            F    +H      +K+  V     PS
Sbjct:    5 ELLTFDHVDIRFPIELNKQGSCS---LNLTNKTDNYVAFKAKTTKPKMYCVKPSVGVVLPRSSCEVLALKEAPADRQ-----CKDKLLFQCKVVE-PGTMDKEVTSEMFSK-EAGHRVEETIFKIIYVA-PPQPQSPVQEGLEDGSSPSASVSDKGNA---SEVFVGPSVGIVDLI---------------RMSDELLIIDPVDVQFPM---------------SCSLNLT--NKTENYVAFKAKTTNAKKYYVRPNVGVVLPRSSCEVLVIMQALKEAPADMQCRDKLLFQCKVVEPETTAKGVTSEMFSKEARHPAEETRLKVMYVTPPQPPS 293

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BLAST of Ggra8529.t1 vs. uniprot
Match: A0A8B8LWV4 (vesicle-associated protein 1-2-like isoform X5 n=1 Tax=Abrus precatorius TaxID=3816 RepID=A0A8B8LWV4_ABRPR)

HSP 1 Score: 70.9 bits (172), Expect = 2.100e-10
Identity = 42/118 (35.59%), Postives = 60/118 (50.85%), Query Frame = 0

Query:   25 SDTLTISNAITTFVAFKVKATNPYRYIVRPSIGVIPPHSSSQIVIDLQPTSKQPEPGPSSDKFMLSVVEAPELQDVELPSDFWT---HHEQNHATRYVKFNVKFVRKPPTSPSLAPSG 139
            S TL +SN   ++VAFKVK TNP +Y VRP+ G++ P S+  +++ +Q   + P      DKF+L  V+ P   D   P D      + E  H     K  V ++  PP  PS  P G
Sbjct:   25 SCTLQLSNKTDSYVAFKVKTTNPKKYCVRPNTGIVSPRSTCDVIVTMQAQKEAPADMQCKDKFLLQSVKTP---DGATPKDITAEMFNKEAGHVVEECKLRVLYI-PPPQPPSPVPEG 138

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BLAST of Ggra8529.t1 vs. uniprot
Match: A0A8B8LX93 (vesicle-associated protein 1-2-like isoform X1 n=4 Tax=Abrus precatorius TaxID=3816 RepID=A0A8B8LX93_ABRPR)

HSP 1 Score: 70.9 bits (172), Expect = 4.200e-10
Identity = 42/118 (35.59%), Postives = 60/118 (50.85%), Query Frame = 0

Query:   25 SDTLTISNAITTFVAFKVKATNPYRYIVRPSIGVIPPHSSSQIVIDLQPTSKQPEPGPSSDKFMLSVVEAPELQDVELPSDFWT---HHEQNHATRYVKFNVKFVRKPPTSPSLAPSG 139
            S TL +SN   ++VAFKVK TNP +Y VRP+ G++ P S+  +++ +Q   + P      DKF+L  V+ P   D   P D      + E  H     K  V ++  PP  PS  P G
Sbjct:   25 SCTLQLSNKTDSYVAFKVKTTNPKKYCVRPNTGIVSPRSTCDVIVTMQAQKEAPADMQCKDKFLLQSVKTP---DGATPKDITAEMFNKEAGHVVEECKLRVLYI-PPPQPPSPVPEG 138

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BLAST of Ggra8529.t1 vs. uniprot
Match: vesicle-associated protein 1-2 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053F7EDF (vesicle-associated protein 1-2 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053F7EDF)

HSP 1 Score: 70.5 bits (171), Expect = 4.840e-10
Identity = 40/116 (34.48%), Postives = 64/116 (55.17%), Query Frame = 0

Query:   25 SDTLTISNAITTFVAFKVKATNPYRYIVRPSIGVIPPHSSSQIVIDLQPTSKQPEPGPSSDKFML-SVVEAPELQDVELPSDFWTHHEQNHATRYVKFNVKFVRKPPTSPSLAPSG 139
            S T+ ++N   ++VAFKVK TNP +Y VRP+ G++ PHS+  +++ +Q   + P      DKF+L SV+  PE+   ++ SD +     N    + K  V ++  PP  PS    G
Sbjct:   25 SCTMQLTNNTNSYVAFKVKTTNPKKYSVRPNTGIVLPHSTHDLLVTMQAQKESPADMQCKDKFLLQSVITTPEITVKDITSDMFNKDSGNLIDEW-KLKVSYI-SPPQPPSAVQEG 138

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BLAST of Ggra8529.t1 vs. uniprot
Match: A0A0K9RQ92 (MSP domain-containing protein n=1 Tax=Spinacia oleracea TaxID=3562 RepID=A0A0K9RQ92_SPIOL)

HSP 1 Score: 69.7 bits (169), Expect = 8.840e-10
Identity = 41/116 (35.34%), Postives = 64/116 (55.17%), Query Frame = 0

Query:   25 SDTLTISNAITTFVAFKVKATNPYRYIVRPSIGVIPPHSSSQIVIDLQPTSKQPEPGPSSDKFML-SVVEAPELQDVELPSDFWTHHEQNHATRYVKFNVKFVRKPPTSPSLAPSG 139
            S T+ ++N   ++VAFKVK TNP +Y VRP+ G++ PHS+  +++ +Q   + P      DKF+L SV+ +PE    ++ SD +     N    + K  V +V  PP  PS    G
Sbjct:   25 SCTMQLTNLTDSYVAFKVKTTNPKKYSVRPNTGIVLPHSNHDLLVTMQAQKEAPADMQCRDKFLLQSVIASPETTIKDITSDMFNKESGNLVDEW-KLKVSYV-SPPQPPSAVHEG 138

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BLAST of Ggra8529.t1 vs. uniprot
Match: A0A2G9GQU0 (VAMP-associated protein involved in inositol metabolism n=2 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9GQU0_9LAMI)

HSP 1 Score: 70.5 bits (171), Expect = 2.100e-9
Identity = 84/325 (25.85%), Postives = 131/325 (40.31%), Query Frame = 0

Query:    2 DLIHADKRVLCFPAGPLLPGSTTSDTLTISNAITTFVAFKVKATNPYRYIVRPSIGVIPPHSSSQIVIDLQPTSKQPEPGPSSDKFML-SVVEAPELQDVELPSDFWTHHEQNHATRYVKFNVKFVRKPPTSPSLAPSGLSLTGAEAAVRNGGLSPLSTSRTSSPHLGSPDIFHPSLPPLSDTAPPQPRLVSHLIEVDKRVLRFPAGRLKSGSSHSDTLGGSASDNLTVSNVTTTFVAFKVNTTNLNRYIVRPNKGVIPPHGSSQISIGLQPASKPPKPGPSRDKFMVNVIEAHELTDAELPPNFWTHHKHYDSVKGIKLAVVFS 325
            DL+  + +VL FP          S  + +SN     VAFKV  T+P +Y VRPS G+I P S   +++        P     +DKF + SV  +P     +            H     K  V F     TSPS  PS  +   A +++ +G      T  T+S                SD+       V  L+++    L+FP    K  S             L ++N+T   V FKV  T+  +Y V+P  G++ P  +  + + + P +K P     +DKF++  I        EL P  +     +  V+  KL VV++
Sbjct:    5 DLLKIEPQVLSFPHEL---NKQVSCRIRLSNITRKGVAFKVMTTDPKKYTVRPSWGIILPGSCLDVIVTTHCLKALPPDQQCADKFKINSVFASPHATTEDDVRKLLDEKAGGHVLA-CKLGVIF-----TSPSQVPSLAAEESASSSIASG------TEYTNS----------------SDSDLKMD--VKKLLDITPSELQFPFELNKEFSCL-----------LRLANMTENHVFFKVKATHPQKYSVQPKVGIVFPRSTCDVIVRMHPQTKIPVDKECKDKFLIQSIVGSPRAINELTPKMFDEPGRF--VEEFKLRVVYT 283

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BLAST of Ggra8529.t1 vs. uniprot
Match: A0A843WDT8 (MSP domain-containing protein n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843WDT8_COLES)

HSP 1 Score: 67.8 bits (164), Expect = 6.050e-9
Identity = 43/116 (37.07%), Postives = 62/116 (53.45%), Query Frame = 0

Query:   25 SDTLTISNAITTFVAFKVKATNPYRYIVRPSIGVIPPHSSSQIVIDLQPTSKQPEPGPSSDKFML-SVVEAPELQDVELPSDFWTHHEQNHATRYVKFNVKFVRKPPTSPSLAPSG 139
            S +L +SN    +VAFKVK TNP +Y VRP+ GV+PPHS+  +++ +Q     P      DKF++ SVV  P     ++  + +T  E  +     K  V +V  PP  PS  P G
Sbjct:   25 SCSLRLSNKNEDYVAFKVKTTNPKKYCVRPNTGVVPPHSTCDVIVTMQAQRDAPIDMQCKDKFLVQSVVANPGATVKDITPEMFTK-ESGNTVDECKLKVLYV-PPPQPPSPVPEG 138

The following BLAST results are available for this feature:

BLAST of Ggra8529.t1 vs. uniprot

BLAST of Ggra8529.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A2V3IKQ8	7.940e-32	44.74	Vesicle-associated protein 1-2 n=1 Tax=Gracilariop...	[more]
VAP14	4.200e-14	28.38	Vesicle-associated protein 1-4 n=1 Tax=Arabidopsis...	[more]
F4I818	4.810e-14	28.38	Vesicle-associated protein 1-4 n=11 Tax=Arabidopsi...	[more]
A0A7G2E201	4.090e-12	27.76	(thale cress) hypothetical protein n=1 Tax=Arabido...	[more]
A0A8B8LWV4	2.100e-10	35.59	vesicle-associated protein 1-2-like isoform X5 n=1...	[more]
A0A8B8LX93	4.200e-10	35.59	vesicle-associated protein 1-2-like isoform X1 n=4...	[more]
vesicle-associated protein 1-2 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053F7EDF	4.840e-10	34.48	vesicle-associated protein 1-2 n=1 Tax=Beta vulgar...	[more]
A0A0K9RQ92	8.840e-10	35.34	MSP domain-containing protein n=1 Tax=Spinacia ole...	[more]
A0A2G9GQU0	2.100e-9	25.85	VAMP-associated protein involved in inositol metab...	[more]
A0A843WDT8	6.050e-9	37.07	MSP domain-containing protein n=1 Tax=Colocasia es...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000535	Major sperm protein (MSP) domain	PFAM	PF00635	Motile_Sperm	coord: 407..486 e-value: 1.2E-11 score: 44.5 coord: 222..300 e-value: 6.8E-16 score: 58.1 coord: 17..109 e-value: 2.3E-15 score: 56.4
IPR000535	Major sperm protein (MSP) domain	PROSITE	PS50202	MSP	coord: 200..325 score: 17.378859
IPR000535	Major sperm protein (MSP) domain	PROSITE	PS50202	MSP	coord: 2..126 score: 17.575569
IPR000535	Major sperm protein (MSP) domain	PROSITE	PS50202	MSP	coord: 386..506 score: 18.449833
IPR013783	Immunoglobulin-like fold	GENE3D	2.60.40.10	Immunoglobulins	coord: 385..507 e-value: 7.5E-18 score: 66.6 coord: 2..128 e-value: 5.4E-21 score: 76.8
IPR013783	Immunoglobulin-like fold	GENE3D	2.60.40.10	Immunoglobulins	coord: 192..325 e-value: 5.0E-21 score: 76.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 331..375
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 262..283
IPR016763	Vesicle-associated membrane-protein-associated protein	PANTHER	PTHR10809	VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN	coord: 392..509 coord: 194..337 coord: 7..137
IPR008962	PapD-like superfamily	SUPERFAMILY	49354	PapD-like	coord: 11..129
IPR008962	PapD-like superfamily	SUPERFAMILY	49354	PapD-like	coord: 394..508
IPR008962	PapD-like superfamily	SUPERFAMILY	49354	PapD-like	coord: 219..325

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000191_pilon	contig	tig00000191_pilon:102118..103809 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra8529.t1	Ggra8529.t1	Gracilaria gracilis GNS1m male	mRNA	tig00000191_pilon 102118..103809 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ggra8529.t1 ID=Ggra8529.t1|Name=Ggra8529.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=564bp
MDLIHADKRVLCFPAGPLLPGSTTSDTLTISNAITTFVAFKVKATNPYRY
IVRPSIGVIPPHSSSQIVIDLQPTSKQPEPGPSSDKFMLSVVEAPELQDV
ELPSDFWTHHEQNHATRYVKFNVKFVRKPPTSPSLAPSGLSLTGAEAAVR
NGGLSPLSTSRTSSPHLGSPDIFHPSLPPLSDTAPPQPRLVSHLIEVDKR
VLRFPAGRLKSGSSHSDTLGGSASDNLTVSNVTTTFVAFKVNTTNLNRYI
VRPNKGVIPPHGSSQISIGLQPASKPPKPGPSRDKFMVNVIEAHELTDAE
LPPNFWTHHKHYDSVKGIKLAVVFSGHQPSLRSPFSSDTPSRPRGKTRTP
AVTEDTAVTRPTNSAPMASSARDHTSTSQRWLAMGIVNVDKRVLSFPLVA
PGVISGEALTICNATAKPVAFKVKVTNTREYIVRPALGTIPPHDSFELLM
GMRVNSDQAESERPADKMLLQVIEVPELMDSNQAREFWAHLEDREVESIK
LPIQLVRHTCFGDGERNLDLSQSRSNSYGQQYFGRLMERMLCCVRGRHSH
SNCPTSLAAVDKR*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000535	MSP_dom
IPR013783	Ig-like_fold
IPR016763	VAP
IPR008962	PapD-like_sf