Ggra8529.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra8529.t1
Unique Name	Ggra8529.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	564

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000191_pilon	contig	tig00000191_pilon:102118..103809 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3702.AT1G51270.3
PFAMs	Motile_Sperm
Max annot lvl	35493\|Streptophyta
GOs	GO:0000322,GO:0000325,GO:0000326,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005773,GO:0005783,GO:0005789,GO:0005829,GO:0005886,GO:0006605,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0031224,GO:0031984,GO:0033036,GO:0034613,GO:0042175,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0071944,GO:0098827
Evalue	1.88e-14
EggNOG OGs	COG5066@1\|root,KOG0439@2759\|Eukaryota,37HIK@33090\|Viridiplantae,3GC3J@35493\|Streptophyta,3HRDS@3699\|Brassicales
Description	Vesicle-associated protein
COG category	U

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra8529	Ggra8529	Gracilaria gracilis GNS1m male	gene	tig00000191_pilon 102118..103809 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8529.t1.start1	Ggra8529.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000191_pilon 102118..102120 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8529.t1.CDS1	Ggra8529.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000191_pilon 102118..103809 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8529.t1.exon1	Ggra8529.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000191_pilon 102118..103809 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8529.t1.stop1	Ggra8529.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000191_pilon 103807..103809 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8529.t1	Ggra8529.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000191_pilon 102118..103809 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000191_pilon:102118..103809+
coding sequence from alignment at tig00000191_pilon:102118..103809+

mRNA sequence

>Ggra8529.t1 ID=Ggra8529.t1|Name=Ggra8529.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=564bp
MDLIHADKRVLCFPAGPLLPGSTTSDTLTISNAITTFVAFKVKATNPYRY
IVRPSIGVIPPHSSSQIVIDLQPTSKQPEPGPSSDKFMLSVVEAPELQDV
ELPSDFWTHHEQNHATRYVKFNVKFVRKPPTSPSLAPSGLSLTGAEAAVR
NGGLSPLSTSRTSSPHLGSPDIFHPSLPPLSDTAPPQPRLVSHLIEVDKR
VLRFPAGRLKSGSSHSDTLGGSASDNLTVSNVTTTFVAFKVNTTNLNRYI
VRPNKGVIPPHGSSQISIGLQPASKPPKPGPSRDKFMVNVIEAHELTDAE
LPPNFWTHHKHYDSVKGIKLAVVFSGHQPSLRSPFSSDTPSRPRGKTRTP
AVTEDTAVTRPTNSAPMASSARDHTSTSQRWLAMGIVNVDKRVLSFPLVA
PGVISGEALTICNATAKPVAFKVKVTNTREYIVRPALGTIPPHDSFELLM
GMRVNSDQAESERPADKMLLQVIEVPELMDSNQAREFWAHLEDREVESIK
LPIQLVRHTCFGDGERNLDLSQSRSNSYGQQYFGRLMERMLCCVRGRHSH
SNCPTSLAAVDKR*

spliced messenger RNA

>Ggra8529.t1 ID=Ggra8529.t1|Name=Ggra8529.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1692bp|location=Sequence derived from alignment at tig00000191_pilon:102118..103809+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATCTCATACACGCCGATAAACGAGTGCTTTGCTTCCCTGCAGGTCC
GCTGTTACCAGGGTCGACCACAAGTGATACGCTTACCATAAGCAATGCCA
TCACAACTTTTGTTGCTTTCAAGGTGAAGGCTACAAATCCATATCGCTAC
ATCGTGCGTCCCAGTATCGGTGTTATTCCGCCACACTCTTCCTCCCAGAT
CGTCATTGACCTTCAGCCCACCTCTAAGCAACCGGAGCCTGGACCTTCAA
GCGATAAATTTATGTTGAGCGTCGTCGAGGCGCCAGAACTTCAAGATGTA
GAGTTGCCGAGCGACTTTTGGACTCATCATGAGCAGAACCACGCCACCAG
ATATGTGAAGTTCAATGTCAAATTTGTGCGAAAGCCTCCCACTTCTCCAT
CGCTGGCTCCGTCAGGACTATCTCTTACAGGAGCGGAAGCTGCAGTACGC
AATGGGGGCCTAAGTCCGCTATCAACATCCCGTACTTCTTCTCCACATCT
GGGATCCCCTGACATATTTCACCCGTCCCTGCCACCGCTGAGCGACACAG
CACCACCGCAACCACGTTTGGTATCACATCTCATAGAAGTCGACAAACGA
GTACTCCGCTTCCCCGCAGGTCGGCTAAAGTCTGGTTCCAGCCACAGTGA
TACTCTCGGTGGTAGCGCCAGTGATAATCTTACCGTTAGCAACGTTACTA
CGACGTTTGTGGCTTTCAAGGTCAACACCACCAATCTGAACCGCTACATC
GTGCGCCCCAATAAGGGGGTTATTCCACCACATGGTTCGTCTCAGATCTC
CATTGGTCTGCAGCCCGCCTCTAAGCCACCGAAGCCTGGACCCTCGAGGG
ACAAATTCATGGTAAATGTCATTGAAGCACACGAACTAACAGACGCGGAA
CTGCCACCAAATTTCTGGACTCATCACAAGCATTACGATTCCGTCAAAGG
CATAAAGCTCGCGGTAGTGTTTTCGGGGCATCAACCTTCCCTTCGATCGC
CATTTAGTTCTGACACCCCCTCTCGTCCGAGGGGGAAGACCAGAACACCT
GCAGTAACTGAAGATACGGCCGTTACTCGTCCCACGAACTCAGCACCAAT
GGCATCCAGTGCACGGGACCACACGTCGACCTCACAGCGTTGGCTCGCGA
TGGGTATAGTCAATGTAGACAAACGCGTGTTGTCCTTTCCACTAGTCGCG
CCAGGAGTCATTTCGGGCGAAGCGCTTACTATTTGCAATGCAACAGCTAA
GCCGGTCGCATTCAAGGTGAAGGTCACCAATACGCGTGAATACATCGTTC
GCCCAGCTTTAGGTACCATTCCACCACACGACTCTTTCGAGCTGCTCATG
GGCATGCGCGTGAACTCAGATCAAGCAGAGTCTGAGCGTCCAGCTGACAA
GATGCTTCTGCAGGTAATCGAGGTACCAGAACTCATGGATTCAAACCAAG
CGAGAGAGTTTTGGGCCCATCTTGAGGATCGCGAAGTTGAGAGCATCAAG
TTGCCTATTCAGTTGGTGAGGCACACATGTTTTGGGGATGGAGAGAGGAA
CCTTGACCTGTCACAATCAAGATCGAACTCATATGGACAGCAATACTTTG
GTAGGCTGATGGAGAGGATGCTATGCTGTGTTAGAGGTAGACATAGTCAT
TCCAACTGCCCAACCTCTTTGGCGGCGGTCGATAAACGTTGA

protein sequence of Ggra8529.t1

>Ggra8529.t1 ID=Ggra8529.t1|Name=Ggra8529.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=564bp
MDLIHADKRVLCFPAGPLLPGSTTSDTLTISNAITTFVAFKVKATNPYRY
IVRPSIGVIPPHSSSQIVIDLQPTSKQPEPGPSSDKFMLSVVEAPELQDV
ELPSDFWTHHEQNHATRYVKFNVKFVRKPPTSPSLAPSGLSLTGAEAAVR
NGGLSPLSTSRTSSPHLGSPDIFHPSLPPLSDTAPPQPRLVSHLIEVDKR
VLRFPAGRLKSGSSHSDTLGGSASDNLTVSNVTTTFVAFKVNTTNLNRYI
VRPNKGVIPPHGSSQISIGLQPASKPPKPGPSRDKFMVNVIEAHELTDAE
LPPNFWTHHKHYDSVKGIKLAVVFSGHQPSLRSPFSSDTPSRPRGKTRTP
AVTEDTAVTRPTNSAPMASSARDHTSTSQRWLAMGIVNVDKRVLSFPLVA
PGVISGEALTICNATAKPVAFKVKVTNTREYIVRPALGTIPPHDSFELLM
GMRVNSDQAESERPADKMLLQVIEVPELMDSNQAREFWAHLEDREVESIK
LPIQLVRHTCFGDGERNLDLSQSRSNSYGQQYFGRLMERMLCCVRGRHSH
SNCPTSLAAVDKR*

mRNA from alignment at tig00000191_pilon:102118..103809+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra8529.t1 ID=Ggra8529.t1|Name=Ggra8529.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1692bp|location=Sequence derived from alignment at tig00000191_pilon:102118..103809+ (Gracilaria gracilis GNS1m male)
ATGGATCTCATACACGCCGATAAACGAGTGCTTTGCTTCCCTGCAGGTCC
GCTGTTACCAGGGTCGACCACAAGTGATACGCTTACCATAAGCAATGCCA
TCACAACTTTTGTTGCTTTCAAGGTGAAGGCTACAAATCCATATCGCTAC
ATCGTGCGTCCCAGTATCGGTGTTATTCCGCCACACTCTTCCTCCCAGAT
CGTCATTGACCTTCAGCCCACCTCTAAGCAACCGGAGCCTGGACCTTCAA
GCGATAAATTTATGTTGAGCGTCGTCGAGGCGCCAGAACTTCAAGATGTA
GAGTTGCCGAGCGACTTTTGGACTCATCATGAGCAGAACCACGCCACCAG
ATATGTGAAGTTCAATGTCAAATTTGTGCGAAAGCCTCCCACTTCTCCAT
CGCTGGCTCCGTCAGGACTATCTCTTACAGGAGCGGAAGCTGCAGTACGC
AATGGGGGCCTAAGTCCGCTATCAACATCCCGTACTTCTTCTCCACATCT
GGGATCCCCTGACATATTTCACCCGTCCCTGCCACCGCTGAGCGACACAG
CACCACCGCAACCACGTTTGGTATCACATCTCATAGAAGTCGACAAACGA
GTACTCCGCTTCCCCGCAGGTCGGCTAAAGTCTGGTTCCAGCCACAGTGA
TACTCTCGGTGGTAGCGCCAGTGATAATCTTACCGTTAGCAACGTTACTA
CGACGTTTGTGGCTTTCAAGGTCAACACCACCAATCTGAACCGCTACATC
GTGCGCCCCAATAAGGGGGTTATTCCACCACATGGTTCGTCTCAGATCTC
CATTGGTCTGCAGCCCGCCTCTAAGCCACCGAAGCCTGGACCCTCGAGGG
ACAAATTCATGGTAAATGTCATTGAAGCACACGAACTAACAGACGCGGAA
CTGCCACCAAATTTCTGGACTCATCACAAGCATTACGATTCCGTCAAAGG
CATAAAGCTCGCGGTAGTGTTTTCGGGGCATCAACCTTCCCTTCGATCGC
CATTTAGTTCTGACACCCCCTCTCGTCCGAGGGGGAAGACCAGAACACCT
GCAGTAACTGAAGATACGGCCGTTACTCGTCCCACGAACTCAGCACCAAT
GGCATCCAGTGCACGGGACCACACGTCGACCTCACAGCGTTGGCTCGCGA
TGGGTATAGTCAATGTAGACAAACGCGTGTTGTCCTTTCCACTAGTCGCG
CCAGGAGTCATTTCGGGCGAAGCGCTTACTATTTGCAATGCAACAGCTAA
GCCGGTCGCATTCAAGGTGAAGGTCACCAATACGCGTGAATACATCGTTC
GCCCAGCTTTAGGTACCATTCCACCACACGACTCTTTCGAGCTGCTCATG
GGCATGCGCGTGAACTCAGATCAAGCAGAGTCTGAGCGTCCAGCTGACAA
GATGCTTCTGCAGGTAATCGAGGTACCAGAACTCATGGATTCAAACCAAG
CGAGAGAGTTTTGGGCCCATCTTGAGGATCGCGAAGTTGAGAGCATCAAG
TTGCCTATTCAGTTGGTGAGGCACACATGTTTTGGGGATGGAGAGAGGAA
CCTTGACCTGTCACAATCAAGATCGAACTCATATGGACAGCAATACTTTG
GTAGGCTGATGGAGAGGATGCTATGCTGTGTTAGAGGTAGACATAGTCAT
TCCAACTGCCCAACCTCTTTGGCGGCGGTCGATAAACGTTGA

Coding sequence (CDS) from alignment at tig00000191_pilon:102118..103809+

>Ggra8529.t1 ID=Ggra8529.t1|Name=Ggra8529.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1692bp|location=Sequence derived from alignment at tig00000191_pilon:102118..103809+ (Gracilaria gracilis GNS1m male)
ATGGATCTCATACACGCCGATAAACGAGTGCTTTGCTTCCCTGCAGGTCC
GCTGTTACCAGGGTCGACCACAAGTGATACGCTTACCATAAGCAATGCCA
TCACAACTTTTGTTGCTTTCAAGGTGAAGGCTACAAATCCATATCGCTAC
ATCGTGCGTCCCAGTATCGGTGTTATTCCGCCACACTCTTCCTCCCAGAT
CGTCATTGACCTTCAGCCCACCTCTAAGCAACCGGAGCCTGGACCTTCAA
GCGATAAATTTATGTTGAGCGTCGTCGAGGCGCCAGAACTTCAAGATGTA
GAGTTGCCGAGCGACTTTTGGACTCATCATGAGCAGAACCACGCCACCAG
ATATGTGAAGTTCAATGTCAAATTTGTGCGAAAGCCTCCCACTTCTCCAT
CGCTGGCTCCGTCAGGACTATCTCTTACAGGAGCGGAAGCTGCAGTACGC
AATGGGGGCCTAAGTCCGCTATCAACATCCCGTACTTCTTCTCCACATCT
GGGATCCCCTGACATATTTCACCCGTCCCTGCCACCGCTGAGCGACACAG
CACCACCGCAACCACGTTTGGTATCACATCTCATAGAAGTCGACAAACGA
GTACTCCGCTTCCCCGCAGGTCGGCTAAAGTCTGGTTCCAGCCACAGTGA
TACTCTCGGTGGTAGCGCCAGTGATAATCTTACCGTTAGCAACGTTACTA
CGACGTTTGTGGCTTTCAAGGTCAACACCACCAATCTGAACCGCTACATC
GTGCGCCCCAATAAGGGGGTTATTCCACCACATGGTTCGTCTCAGATCTC
CATTGGTCTGCAGCCCGCCTCTAAGCCACCGAAGCCTGGACCCTCGAGGG
ACAAATTCATGGTAAATGTCATTGAAGCACACGAACTAACAGACGCGGAA
CTGCCACCAAATTTCTGGACTCATCACAAGCATTACGATTCCGTCAAAGG
CATAAAGCTCGCGGTAGTGTTTTCGGGGCATCAACCTTCCCTTCGATCGC
CATTTAGTTCTGACACCCCCTCTCGTCCGAGGGGGAAGACCAGAACACCT
GCAGTAACTGAAGATACGGCCGTTACTCGTCCCACGAACTCAGCACCAAT
GGCATCCAGTGCACGGGACCACACGTCGACCTCACAGCGTTGGCTCGCGA
TGGGTATAGTCAATGTAGACAAACGCGTGTTGTCCTTTCCACTAGTCGCG
CCAGGAGTCATTTCGGGCGAAGCGCTTACTATTTGCAATGCAACAGCTAA
GCCGGTCGCATTCAAGGTGAAGGTCACCAATACGCGTGAATACATCGTTC
GCCCAGCTTTAGGTACCATTCCACCACACGACTCTTTCGAGCTGCTCATG
GGCATGCGCGTGAACTCAGATCAAGCAGAGTCTGAGCGTCCAGCTGACAA
GATGCTTCTGCAGGTAATCGAGGTACCAGAACTCATGGATTCAAACCAAG
CGAGAGAGTTTTGGGCCCATCTTGAGGATCGCGAAGTTGAGAGCATCAAG
TTGCCTATTCAGTTGGTGAGGCACACATGTTTTGGGGATGGAGAGAGGAA
CCTTGACCTGTCACAATCAAGATCGAACTCATATGGACAGCAATACTTTG
GTAGGCTGATGGAGAGGATGCTATGCTGTGTTAGAGGTAGACATAGTCAT
TCCAACTGCCCAACCTCTTTGGCGGCGGTCGATAAACGTTGA