Ggra8529.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8529.t1
Unique NameGgra8529.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length564
Homology
BLAST of Ggra8529.t1 vs. uniprot
Match: A0A2V3IKQ8 (Vesicle-associated protein 1-2 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IKQ8_9FLOR)

HSP 1 Score: 135 bits (339), Expect = 7.940e-32
Identity = 85/190 (44.74%), Postives = 114/190 (60.00%), Query Frame = 0
Query:    1 MDLIHADKRVLCFPAGPLLPGSTTSDTLTISNAITTFVAFKVKATNPYRYIVRPSIGVIPPHSSSQIVIDLQPTSKQPEPGPSSDKFMLSVVEAPELQDVELPSDFWTHHEQNHATRYVKFNVKFVRKPP-TSPSLAPSGLSLTGAEAAVRNGGLSPLS--TSRTSSPHLGS--PDIFHPSLPPLSDTAP 185
            MDL+  D++   F       GS  SDTLT++N  TT +AFKVK TN  RYIV+P+ G+I P  S++I I LQPT+  PE G S DKFML V+EAPEL D  LP+D+W  HE + A R VKF V FV  P   SP+  PS   +TG++    +  L+P S  ++ T+ PH     P + H + P  + +AP
Sbjct:   21 MDLVTVDRQTFRFTVNSAPTGSLISDTLTVTNVATTHIAFKVKTTNQERYIVKPNAGLIAPRGSAEIYIALQPTTVLPELGSSRDKFMLRVIEAPELDDT-LPADYWQTHETDAAVRDVKFRVAFVTDPHFPSPTNQPS---VTGSDVTPTSPQLAPASAPSAPTAVPHPRDLPPSVPHRTQPDPASSAP 206          
BLAST of Ggra8529.t1 vs. uniprot
Match: VAP14 (Vesicle-associated protein 1-4 n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=VAP14_ARATH)

HSP 1 Score: 86.3 bits (212), Expect = 4.200e-14
Identity = 84/296 (28.38%), Postives = 131/296 (44.26%), Query Frame = 0
Query:    2 DLIHADKRVLCFPAGPLLPGSTTSDTLTISNAITTFVAFKVKATNPYRYIVRPSIGVIPPHSSSQIVIDLQPTSKQPEPGPSSDK--FMLSVVEAPELQDVELPSDFWTHHEQNHATRYVKFNVKFVRKPPTSPSLAPSGLSL-TGAEAAVRNGGLSPLSTSRTSSPHLGSPDIFHPSLPPLSDTAPPQPRLVSHLIEVDKRVLRFPAGRLKSGSSHSDTLGGSASDNLTVSNVTTTFVAFKVNTTNLNRYIVRPNKGVIPPHGSSQISIGLQPASKPPKPGPSRDK--FMVNVIE 292
            +L+  D   + FP      GS +   L ++N    +VAFK + T P  Y V+PS+GV+ P SS ++++ +Q   + P      DK  F   VVE P   D E+ S+ ++  E  H      F + +V  PP   S    GL   +   A+V + G +   +     P +G  D+                R+   L+ +D   ++FP             L    S +L ++N T  +VAFK  TTN  +Y VRPN GV+ P  S ++ + +Q   + P     RDK  F   V+E
Sbjct:    5 ELLTFDHVDIRFPIELNKQGSCS---LNLTNKTDNYVAFKAQTTKPKMYCVKPSVGVVLPRSSCEVLVVMQALKEAPADRQCKDKLLFQCKVVE-PGTMDKEVTSEMFSK-EAGHRVEETIFKIIYVA-PPQPQSPVQEGLEDGSSPSASVSDKGNA---SEVFVGPSVGIVDLI---------------RMSDELLIIDPVDVQFPI-----------ELNKKVSCSLNLTNKTENYVAFKAKTTNAKKYYVRPNVGVVLPRSSCEVLVIMQALKEAPADMQCRDKLLFQCKVVE 265          
BLAST of Ggra8529.t1 vs. uniprot
Match: F4I818 (Vesicle-associated protein 1-4 n=11 Tax=Arabidopsis thaliana TaxID=3702 RepID=F4I818_ARATH)

HSP 1 Score: 86.3 bits (212), Expect = 4.810e-14
Identity = 84/296 (28.38%), Postives = 131/296 (44.26%), Query Frame = 0
Query:    2 DLIHADKRVLCFPAGPLLPGSTTSDTLTISNAITTFVAFKVKATNPYRYIVRPSIGVIPPHSSSQIVIDLQPTSKQPEPGPSSDK--FMLSVVEAPELQDVELPSDFWTHHEQNHATRYVKFNVKFVRKPPTSPSLAPSGLSL-TGAEAAVRNGGLSPLSTSRTSSPHLGSPDIFHPSLPPLSDTAPPQPRLVSHLIEVDKRVLRFPAGRLKSGSSHSDTLGGSASDNLTVSNVTTTFVAFKVNTTNLNRYIVRPNKGVIPPHGSSQISIGLQPASKPPKPGPSRDK--FMVNVIE 292
            +L+  D   + FP      GS +   L ++N    +VAFK + T P  Y V+PS+GV+ P SS ++++ +Q   + P      DK  F   VVE P   D E+ S+ ++  E  H      F + +V  PP   S    GL   +   A+V + G +   +     P +G  D+                R+   L+ +D   ++FP             L    S +L ++N T  +VAFK  TTN  +Y VRPN GV+ P  S ++ + +Q   + P     RDK  F   V+E
Sbjct:    5 ELLTFDHVDIRFPIELNKQGSCS---LNLTNKTDNYVAFKAQTTKPKMYCVKPSVGVVLPRSSCEVLVVMQALKEAPADRQCKDKLLFQCKVVE-PGTMDKEVTSEMFSK-EAGHRVEETIFKIIYVA-PPQPQSPVQEGLEDGSSPSASVSDKGNA---SEVFVGPSVGIVDLI---------------RMSDELLIIDPVDVQFPI-----------ELNKKVSCSLNLTNKTENYVAFKAKTTNAKKYYVRPNVGVVLPRSSCEVLVIMQALKEAPADMQCRDKLLFQCKVVE 265          
BLAST of Ggra8529.t1 vs. uniprot
Match: A0A7G2E201 ((thale cress) hypothetical protein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=A0A7G2E201_ARATH)

HSP 1 Score: 79.3 bits (194), Expect = 4.090e-12
Identity = 93/335 (27.76%), Postives = 138/335 (41.19%), Query Frame = 0
Query:    2 DLIHADKRVLCFPAGPLLPGSTTSDTLTISNAITTFVAFKVKATNPYRYIVRPSIGVIPPHSSSQIV-IDLQPTSKQPEPGPSSDK--FMLSVVEAPELQDVELPSDFWTHHEQNHATRYVKFNVKFVRKPPTSPSLAPSGLSL-TGAEAAVRNGGLSPLSTSRTSSPHLGSPDIFHPSLPPLSDTAPPQPRLVSHLIEVDKRVLRFPAGRLKSGSSHSDTLGGSASDNLTVSNVTTTFVAFKVNTTNLNRYIVRPNKGVIPPHGSSQISIGLQPASKPPKPGPSRDK--FMVNVIEAHELTDAELPPNFWTHHKHYDSVKGIKLAVVFSGHQPS 330
            +L+  D   + FP      GS +   L ++N    +VAFK K T P  Y V+PS+GV+ P SS +++ +   P  +Q       DK  F   VVE P   D E+ S+ ++  E  H      F + +V  PP   S    GL   +   A+V + G +   +     P +G  D+                R+   L+ +D   ++FP                S S NLT  N T  +VAFK  TTN  +Y VRPN GV+ P  S ++ + +Q   + P     RDK  F   V+E            F    +H      +K+  V     PS
Sbjct:    5 ELLTFDHVDIRFPIELNKQGSCS---LNLTNKTDNYVAFKAKTTKPKMYCVKPSVGVVLPRSSCEVLALKEAPADRQ-----CKDKLLFQCKVVE-PGTMDKEVTSEMFSK-EAGHRVEETIFKIIYVA-PPQPQSPVQEGLEDGSSPSASVSDKGNA---SEVFVGPSVGIVDLI---------------RMSDELLIIDPVDVQFPM---------------SCSLNLT--NKTENYVAFKAKTTNAKKYYVRPNVGVVLPRSSCEVLVIMQALKEAPADMQCRDKLLFQCKVVEPETTAKGVTSEMFSKEARHPAEETRLKVMYVTPPQPPS 293          
BLAST of Ggra8529.t1 vs. uniprot
Match: A0A8B8LWV4 (vesicle-associated protein 1-2-like isoform X5 n=1 Tax=Abrus precatorius TaxID=3816 RepID=A0A8B8LWV4_ABRPR)

HSP 1 Score: 70.9 bits (172), Expect = 2.100e-10
Identity = 42/118 (35.59%), Postives = 60/118 (50.85%), Query Frame = 0
Query:   25 SDTLTISNAITTFVAFKVKATNPYRYIVRPSIGVIPPHSSSQIVIDLQPTSKQPEPGPSSDKFMLSVVEAPELQDVELPSDFWT---HHEQNHATRYVKFNVKFVRKPPTSPSLAPSG 139
            S TL +SN   ++VAFKVK TNP +Y VRP+ G++ P S+  +++ +Q   + P      DKF+L  V+ P   D   P D      + E  H     K  V ++  PP  PS  P G
Sbjct:   25 SCTLQLSNKTDSYVAFKVKTTNPKKYCVRPNTGIVSPRSTCDVIVTMQAQKEAPADMQCKDKFLLQSVKTP---DGATPKDITAEMFNKEAGHVVEECKLRVLYI-PPPQPPSPVPEG 138          
BLAST of Ggra8529.t1 vs. uniprot
Match: A0A8B8LX93 (vesicle-associated protein 1-2-like isoform X1 n=4 Tax=Abrus precatorius TaxID=3816 RepID=A0A8B8LX93_ABRPR)

HSP 1 Score: 70.9 bits (172), Expect = 4.200e-10
Identity = 42/118 (35.59%), Postives = 60/118 (50.85%), Query Frame = 0
Query:   25 SDTLTISNAITTFVAFKVKATNPYRYIVRPSIGVIPPHSSSQIVIDLQPTSKQPEPGPSSDKFMLSVVEAPELQDVELPSDFWT---HHEQNHATRYVKFNVKFVRKPPTSPSLAPSG 139
            S TL +SN   ++VAFKVK TNP +Y VRP+ G++ P S+  +++ +Q   + P      DKF+L  V+ P   D   P D      + E  H     K  V ++  PP  PS  P G
Sbjct:   25 SCTLQLSNKTDSYVAFKVKTTNPKKYCVRPNTGIVSPRSTCDVIVTMQAQKEAPADMQCKDKFLLQSVKTP---DGATPKDITAEMFNKEAGHVVEECKLRVLYI-PPPQPPSPVPEG 138          
BLAST of Ggra8529.t1 vs. uniprot
Match: vesicle-associated protein 1-2 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053F7EDF (vesicle-associated protein 1-2 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053F7EDF)

HSP 1 Score: 70.5 bits (171), Expect = 4.840e-10
Identity = 40/116 (34.48%), Postives = 64/116 (55.17%), Query Frame = 0
Query:   25 SDTLTISNAITTFVAFKVKATNPYRYIVRPSIGVIPPHSSSQIVIDLQPTSKQPEPGPSSDKFML-SVVEAPELQDVELPSDFWTHHEQNHATRYVKFNVKFVRKPPTSPSLAPSG 139
            S T+ ++N   ++VAFKVK TNP +Y VRP+ G++ PHS+  +++ +Q   + P      DKF+L SV+  PE+   ++ SD +     N    + K  V ++  PP  PS    G
Sbjct:   25 SCTMQLTNNTNSYVAFKVKTTNPKKYSVRPNTGIVLPHSTHDLLVTMQAQKESPADMQCKDKFLLQSVITTPEITVKDITSDMFNKDSGNLIDEW-KLKVSYI-SPPQPPSAVQEG 138          
BLAST of Ggra8529.t1 vs. uniprot
Match: A0A0K9RQ92 (MSP domain-containing protein n=1 Tax=Spinacia oleracea TaxID=3562 RepID=A0A0K9RQ92_SPIOL)

HSP 1 Score: 69.7 bits (169), Expect = 8.840e-10
Identity = 41/116 (35.34%), Postives = 64/116 (55.17%), Query Frame = 0
Query:   25 SDTLTISNAITTFVAFKVKATNPYRYIVRPSIGVIPPHSSSQIVIDLQPTSKQPEPGPSSDKFML-SVVEAPELQDVELPSDFWTHHEQNHATRYVKFNVKFVRKPPTSPSLAPSG 139
            S T+ ++N   ++VAFKVK TNP +Y VRP+ G++ PHS+  +++ +Q   + P      DKF+L SV+ +PE    ++ SD +     N    + K  V +V  PP  PS    G
Sbjct:   25 SCTMQLTNLTDSYVAFKVKTTNPKKYSVRPNTGIVLPHSNHDLLVTMQAQKEAPADMQCRDKFLLQSVIASPETTIKDITSDMFNKESGNLVDEW-KLKVSYV-SPPQPPSAVHEG 138          
BLAST of Ggra8529.t1 vs. uniprot
Match: A0A2G9GQU0 (VAMP-associated protein involved in inositol metabolism n=2 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9GQU0_9LAMI)

HSP 1 Score: 70.5 bits (171), Expect = 2.100e-9
Identity = 84/325 (25.85%), Postives = 131/325 (40.31%), Query Frame = 0
Query:    2 DLIHADKRVLCFPAGPLLPGSTTSDTLTISNAITTFVAFKVKATNPYRYIVRPSIGVIPPHSSSQIVIDLQPTSKQPEPGPSSDKFML-SVVEAPELQDVELPSDFWTHHEQNHATRYVKFNVKFVRKPPTSPSLAPSGLSLTGAEAAVRNGGLSPLSTSRTSSPHLGSPDIFHPSLPPLSDTAPPQPRLVSHLIEVDKRVLRFPAGRLKSGSSHSDTLGGSASDNLTVSNVTTTFVAFKVNTTNLNRYIVRPNKGVIPPHGSSQISIGLQPASKPPKPGPSRDKFMVNVIEAHELTDAELPPNFWTHHKHYDSVKGIKLAVVFS 325
            DL+  + +VL FP          S  + +SN     VAFKV  T+P +Y VRPS G+I P S   +++        P     +DKF + SV  +P     +            H     K  V F     TSPS  PS  +   A +++ +G      T  T+S                SD+       V  L+++    L+FP    K  S             L ++N+T   V FKV  T+  +Y V+P  G++ P  +  + + + P +K P     +DKF++  I        EL P  +     +  V+  KL VV++
Sbjct:    5 DLLKIEPQVLSFPHEL---NKQVSCRIRLSNITRKGVAFKVMTTDPKKYTVRPSWGIILPGSCLDVIVTTHCLKALPPDQQCADKFKINSVFASPHATTEDDVRKLLDEKAGGHVLA-CKLGVIF-----TSPSQVPSLAAEESASSSIASG------TEYTNS----------------SDSDLKMD--VKKLLDITPSELQFPFELNKEFSCL-----------LRLANMTENHVFFKVKATHPQKYSVQPKVGIVFPRSTCDVIVRMHPQTKIPVDKECKDKFLIQSIVGSPRAINELTPKMFDEPGRF--VEEFKLRVVYT 283          
BLAST of Ggra8529.t1 vs. uniprot
Match: A0A843WDT8 (MSP domain-containing protein n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843WDT8_COLES)

HSP 1 Score: 67.8 bits (164), Expect = 6.050e-9
Identity = 43/116 (37.07%), Postives = 62/116 (53.45%), Query Frame = 0
Query:   25 SDTLTISNAITTFVAFKVKATNPYRYIVRPSIGVIPPHSSSQIVIDLQPTSKQPEPGPSSDKFML-SVVEAPELQDVELPSDFWTHHEQNHATRYVKFNVKFVRKPPTSPSLAPSG 139
            S +L +SN    +VAFKVK TNP +Y VRP+ GV+PPHS+  +++ +Q     P      DKF++ SVV  P     ++  + +T  E  +     K  V +V  PP  PS  P G
Sbjct:   25 SCSLRLSNKNEDYVAFKVKTTNPKKYCVRPNTGVVPPHSTCDVIVTMQAQRDAPIDMQCKDKFLVQSVVANPGATVKDITPEMFTK-ESGNTVDECKLKVLYV-PPPQPPSPVPEG 138          
The following BLAST results are available for this feature:
BLAST of Ggra8529.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IKQ87.940e-3244.74Vesicle-associated protein 1-2 n=1 Tax=Gracilariop... [more]
VAP144.200e-1428.38Vesicle-associated protein 1-4 n=1 Tax=Arabidopsis... [more]
F4I8184.810e-1428.38Vesicle-associated protein 1-4 n=11 Tax=Arabidopsi... [more]
A0A7G2E2014.090e-1227.76(thale cress) hypothetical protein n=1 Tax=Arabido... [more]
A0A8B8LWV42.100e-1035.59vesicle-associated protein 1-2-like isoform X5 n=1... [more]
A0A8B8LX934.200e-1035.59vesicle-associated protein 1-2-like isoform X1 n=4... [more]
vesicle-associated protein 1-2 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053F7EDF4.840e-1034.48vesicle-associated protein 1-2 n=1 Tax=Beta vulgar... [more]
A0A0K9RQ928.840e-1035.34MSP domain-containing protein n=1 Tax=Spinacia ole... [more]
A0A2G9GQU02.100e-925.85VAMP-associated protein involved in inositol metab... [more]
A0A843WDT86.050e-937.07MSP domain-containing protein n=1 Tax=Colocasia es... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000535Major sperm protein (MSP) domainPFAMPF00635Motile_Spermcoord: 407..486
e-value: 1.2E-11
score: 44.5
coord: 222..300
e-value: 6.8E-16
score: 58.1
coord: 17..109
e-value: 2.3E-15
score: 56.4
IPR000535Major sperm protein (MSP) domainPROSITEPS50202MSPcoord: 200..325
score: 17.378859
IPR000535Major sperm protein (MSP) domainPROSITEPS50202MSPcoord: 2..126
score: 17.575569
IPR000535Major sperm protein (MSP) domainPROSITEPS50202MSPcoord: 386..506
score: 18.449833
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10Immunoglobulinscoord: 385..507
e-value: 7.5E-18
score: 66.6
coord: 2..128
e-value: 5.4E-21
score: 76.8
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10Immunoglobulinscoord: 192..325
e-value: 5.0E-21
score: 76.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 331..375
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 262..283
IPR016763Vesicle-associated membrane-protein-associated proteinPANTHERPTHR10809VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEINcoord: 392..509
coord: 194..337
coord: 7..137
IPR008962PapD-like superfamilySUPERFAMILY49354PapD-likecoord: 11..129
IPR008962PapD-like superfamilySUPERFAMILY49354PapD-likecoord: 394..508
IPR008962PapD-like superfamilySUPERFAMILY49354PapD-likecoord: 219..325

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000191_piloncontigtig00000191_pilon:102118..103809 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8529.t1Ggra8529.t1Gracilaria gracilis GNS1m malemRNAtig00000191_pilon 102118..103809 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8529.t1 ID=Ggra8529.t1|Name=Ggra8529.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=564bp
MDLIHADKRVLCFPAGPLLPGSTTSDTLTISNAITTFVAFKVKATNPYRY
IVRPSIGVIPPHSSSQIVIDLQPTSKQPEPGPSSDKFMLSVVEAPELQDV
ELPSDFWTHHEQNHATRYVKFNVKFVRKPPTSPSLAPSGLSLTGAEAAVR
NGGLSPLSTSRTSSPHLGSPDIFHPSLPPLSDTAPPQPRLVSHLIEVDKR
VLRFPAGRLKSGSSHSDTLGGSASDNLTVSNVTTTFVAFKVNTTNLNRYI
VRPNKGVIPPHGSSQISIGLQPASKPPKPGPSRDKFMVNVIEAHELTDAE
LPPNFWTHHKHYDSVKGIKLAVVFSGHQPSLRSPFSSDTPSRPRGKTRTP
AVTEDTAVTRPTNSAPMASSARDHTSTSQRWLAMGIVNVDKRVLSFPLVA
PGVISGEALTICNATAKPVAFKVKVTNTREYIVRPALGTIPPHDSFELLM
GMRVNSDQAESERPADKMLLQVIEVPELMDSNQAREFWAHLEDREVESIK
LPIQLVRHTCFGDGERNLDLSQSRSNSYGQQYFGRLMERMLCCVRGRHSH
SNCPTSLAAVDKR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000535MSP_dom
IPR013783Ig-like_fold
IPR016763VAP
IPR008962PapD-like_sf