Ggra8527.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8527.t1
Unique NameGgra8527.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length212
Homology
BLAST of Ggra8527.t1 vs. uniprot
Match: A0A2V3J4L0 (60S ribosomal protein L16-A n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J4L0_9FLOR)

HSP 1 Score: 345 bits (885), Expect = 3.810e-119
Identity = 168/198 (84.85%), Postives = 188/198 (94.95%), Query Frame = 0
Query:   14 MFQKRVVIDGKGHLLGRLASVIAKELLNGQEIVVVRCEEIDISGTRHRNRRNFQNYLQKRTNTNPKWGPFHHRAPRMILTKAIRGMLPRKTHRGELAMARLKAYEGIPPTYAQVKRMVVPNALRATHLRTSSKYTNIGVLAGEMGWKYGQLIRSQEQQRKIKSAQDYEQRKELAKLKKKAIENADLSDVTPVLEASGY 211
            MFQKRVVIDGKGHLLGRLASVIAKELL GQEIVVVRCEEI+ISGTRHRNRRNFQNYL+KRTNTNPKWGPFHHRAPRMILTK +RGMLPRKTHRG++AM++ +AYEG+PP Y Q+KRMV+P+A+R THLR SSKYTNIG+LAGEMGWKYG+LIR+QE+ RKIKSAQDYEQRK+LAKLKK+A E ADLSDVTPVLEA+GY
Sbjct:    1 MFQKRVVIDGKGHLLGRLASVIAKELLGGQEIVVVRCEEIEISGTRHRNRRNFQNYLRKRTNTNPKWGPFHHRAPRMILTKTVRGMLPRKTHRGQVAMSKFRAYEGVPPQYTQIKRMVIPDAIRVTHLRPSSKYTNIGILAGEMGWKYGRLIRAQEETRKIKSAQDYEQRKQLAKLKKQATEKADLSDVTPVLEAAGY 198          
BLAST of Ggra8527.t1 vs. uniprot
Match: R7Q8F1 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q8F1_CHOCR)

HSP 1 Score: 305 bits (781), Expect = 2.650e-103
Identity = 151/198 (76.26%), Postives = 173/198 (87.37%), Query Frame = 0
Query:   14 MFQKRVVIDGKGHLLGRLASVIAKELLNGQEIVVVRCEEIDISGTRHRNRRNFQNYLQKRTNTNPKWGPFHHRAPRMILTKAIRGMLPRKTHRGELAMARLKAYEGIPPTYAQVKRMVVPNALRATHLRTSSKYTNIGVLAGEMGWKYGQLIRSQEQQRKIKSAQDYEQRKELAKLKKKAIENADLSDVTPVLEASGY 211
            MFQ  +++DGKGHL+GRLASVIAKELLNGQE+VV+RCEEI+ISGTRHRNR+NFQ+YLQKRTNTNPKWGPFHHRAPRMILTK++RGMLPRKT RGE AMAR KA+EG+PP YA+ KRMVVP ALR THLR S+KYTNIG LAGEMGWKYG LIR  E+QRK++SA DYE+RK LAKLK +AI + DLS    VL  +GY
Sbjct:    1 MFQGTILVDGKGHLIGRLASVIAKELLNGQEVVVLRCEEIEISGTRHRNRKNFQSYLQKRTNTNPKWGPFHHRAPRMILTKSVRGMLPRKTKRGEEAMARFKAFEGVPPAYAKTKRMVVPAALRVTHLRPSAKYTNIGKLAGEMGWKYGSLIRKMEEQRKVESAADYEKRKALAKLKVQAIASVDLSAENQVLAPAGY 198          
BLAST of Ggra8527.t1 vs. uniprot
Match: M2Y898 (60S ribosomal protein L13A n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2Y898_GALSU)

HSP 1 Score: 215 bits (547), Expect = 1.320e-67
Identity = 104/194 (53.61%), Postives = 146/194 (75.26%), Query Frame = 0
Query:   14 MFQKRVVIDGKGHLLGRLASVIAKELLNGQEIVVVRCEEIDISGTRHRNRRNFQNYLQKRTNTNPKWGPFHHRAPRMILTKAIRGMLPRKTHRGELAMARLKAYEGIPPTYAQVKRMVVPNALRATHLRTSSKYTNIGVLAGEMGWKYGQLIRSQEQQRKIKSAQDYEQRKELAKLKKKAIENADLSDVTPVLE 207
            M +  +++D KGHLLGRLASV+AKE+L+GQ+IVVVRCEE++ISG  HR++  F++YL+KR NTNP  GP+HHR+P  I  KA+RGM+PR+  RG  A++RLK +EG+PP Y ++KRMVVP ALR   LR   KYT++G LA ++GWKY  +I+  EQ+RK +S   Y ++KE  K++K+A    DLS+ + +LE
Sbjct:    1 MLEAPIIVDAKGHLLGRLASVVAKEILSGQQIVVVRCEELNISGDHHRHKLKFKSYLRKRMNTNPSRGPYHHRSPSKIFFKAVRGMVPRRIPRGSAALSRLKVFEGVPPPYDRMKRMVVPQALRVVRLRPDRKYTHVGTLASQVGWKYADVIKRLEQKRKQRSKNFYLKKKEAKKVRKEAERGLDLSEWSALLE 194          
BLAST of Ggra8527.t1 vs. uniprot
Match: A0A7S2RKC9 (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RKC9_9STRA)

HSP 1 Score: 214 bits (545), Expect = 5.710e-67
Identity = 109/198 (55.05%), Postives = 147/198 (74.24%), Query Frame = 0
Query:   14 MFQKRVVIDGKGHLLGRLASVIAKELLNGQEIVVVRCEEIDISGTRHRNRRNFQNYLQKRTNTNPKWGPFHHRAPRMILTKAIRGMLPRKTHRGELAMARLKAYEGIPPTYAQVKRMVVPNALRATHLRTSSKYTNIGVLAGEMGWKYGQLIRSQEQQRKIKSAQDYEQRKELAKLKKKAIENADLSDVTPVLEASGY 211
            MF+K++V+DG+GH+LGRLASV+AKELL+GQ +VVVRCE++ +SG+  RN+  +  +L K+T TNPK GPFH RAP  +  + +RGM+P KT+RG+ AMARL+ +EG+P T+ +VKRMVVP+AL+  H +   K T +G LA E GWK+G+LI   E QR  KS   Y Q+KE AKLK +A   ADLS VT +L A+GY
Sbjct:    1 MFEKQIVVDGRGHMLGRLASVVAKELLSGQCVVVVRCEQLVVSGSLIRNKMKWARFLSKKTLTNPKRGPFHFRAPSRMFWRVVRGMIPHKTYRGQQAMARLQTFEGVPETFEKVKRMVVPDALKVLHSKVYRKTTVLGALASESGWKHGELIEKLEAQRTEKSKAFYTQKKEEAKLKARAEAEADLSAVTDILVATGY 198          
BLAST of Ggra8527.t1 vs. uniprot
Match: A0A397TRH1 (60S ribosomal protein L16 n=8 Tax=Eukaryota TaxID=2759 RepID=A0A397TRH1_9GLOM)

HSP 1 Score: 206 bits (524), Expect = 3.560e-64
Identity = 103/199 (51.76%), Postives = 146/199 (73.37%), Query Frame = 0
Query:   15 FQKRVVIDGKGHLLGRLASVIAKELLNGQEIVVVRCEEIDISGTRHRNRRNFQNYLQKRTNTNPKWGPFHHRAPRMILTKAIRGMLPRKTHRGELAMARLKAYEGIPPTYAQVKRMVVPNALRATHLRTSSKYTNIGVLAGEMGWKYGQLIRSQEQQRKIKSAQDYEQRKELAKLKKKAIENA--DLSDVTPVLEASGY 211
            F+K VV+DGKGHL+GRLAS++AK++L GQ++V+VR EE+++SG+  RN+  + +YL+KR   NP  GPFH RAP  +  K IRGM+P KT RG  A+ RLK +EG+PP Y + KRMVVP+ALR   L+   KYT I  L+ E+GWKYG++++  E++RK+KS + YE++K+LA +K +A +N   DLSDV   + A GY
Sbjct:    4 FEKVVVVDGKGHLIGRLASIVAKQILTGQKVVIVRAEELNVSGSFFRNKIKYHDYLRKRMIVNPSRGPFHFRAPSKLFYKTIRGMIPHKTARGAEALKRLKIFEGVPPPYDKKKRMVVPDALRILRLKPGRKYTTISRLSEEVGWKYGEVVKKLEEKRKVKSKEFYERKKKLANIKAQAFKNKSKDLSDVQKDISAYGY 202          
BLAST of Ggra8527.t1 vs. uniprot
Match: A0A5J4Z3W8 (60S ribosomal protein L13a n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z3W8_PORPP)

HSP 1 Score: 205 bits (521), Expect = 8.930e-64
Identity = 106/198 (53.54%), Postives = 142/198 (71.72%), Query Frame = 0
Query:   14 MFQKRVVIDGKGHLLGRLASVIAKELLNGQEIVVVRCEEIDISGTRHRNRRNFQNYLQKRTNTNPKWGPFHHRAPRMILTKAIRGMLPRKTHRGELAMARLKAYEGIPPTYAQVKRMVVPNALRATHLRTSSKYTNIGVLAGEMGWKYGQLIRSQEQQRKIKSAQDYEQRKELAKLKKKAIENADLSDVTPVLEASGY 211
            M++  VV+D + HLLGRLAS++AKELL GQ++VV RCE I++SG   R +  +  +L+KR NTNP  GPFH RAP  I  + +RGMLP KT RG+ A+ RLK +EGIPP Y ++KRMVVP+ALR   L    K+  +G L+ E+GWKY  ++   E +RK+ SA  Y+++K L KLK+KA E+ADLS VTPVLEA G+
Sbjct:    1 MYESVVVVDARAHLLGRLASIVAKELLCGQKVVVTRCEAIEMSGRFIRKKNKYLMFLRKRMNTNPSRGPFHFRAPSRIFWRTVRGMLPHKTERGQEALGRLKVFEGIPPPYDKMKRMVVPDALRVVRLAPRRKHCVLGRLSHEVGWKYQDVLARLETKRKVHSAAYYQRKKALDKLKRKATESADLSKVTPVLEAFGH 198          
BLAST of Ggra8527.t1 vs. uniprot
Match: A0A1X6NR99 (Uncharacterized protein n=2 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NR99_PORUM)

HSP 1 Score: 203 bits (517), Expect = 3.610e-63
Identity = 103/198 (52.02%), Postives = 137/198 (69.19%), Query Frame = 0
Query:   14 MFQKRVVIDGKGHLLGRLASVIAKELLNGQEIVVVRCEEIDISGTRHRNRRNFQNYLQKRTNTNPKWGPFHHRAPRMILTKAIRGMLPRKTHRGELAMARLKAYEGIPPTYAQVKRMVVPNALRATHLRTSSKYTNIGVLAGEMGWKYGQLIRSQEQQRKIKSAQDYEQRKELAKLKKKAIENADLSDVTPVLEASGY 211
            MF+  V +D + HLLGRLAS++AKELLNGQ +VVVRCEE++ISG   RN+  +  +L+KR  TNPK GP H+RAP  I  + +RGMLP KT RG  A+ RL+++EG+PP Y ++K+MVVP+ALR   LR   KYT +G ++ EMGWKYG +I   E +R +  A  +E+ K  AKL+ KA  + DL      LEASGY
Sbjct:    1 MFESTVTVDARAHLLGRLASMVAKELLNGQHVVVVRCEELNISGKHIRNKNKYLAFLRKRMATNPKKGPIHYRAPARIFWRTVRGMLPHKTARGAAALGRLRSFEGVPPPYDKIKKMVVPSALRVVRLRPDRKYTRLGRISTEMGWKYGGVIARLEAKRMVFGAAHHERVKAAAKLRAKATVSVDLGAAAATLEASGY 198          
BLAST of Ggra8527.t1 vs. uniprot
Match: A0A1C7NER9 (60S ribosomal protein L16 n=35 Tax=Mucorineae TaxID=1344963 RepID=A0A1C7NER9_9FUNG)

HSP 1 Score: 203 bits (517), Expect = 4.100e-63
Identity = 108/199 (54.27%), Postives = 144/199 (72.36%), Query Frame = 0
Query:   15 FQKRVVIDGKGHLLGRLASVIAKELLNGQEIVVVRCEEIDISGTRHRNRRNFQNYLQKRTNTNPKWGPFHHRAPRMILTKAIRGMLPRKTHRGELAMARLKAYEGIPPTYAQVKRMVVPNALRATHLRTSSKYTNIGVLAGEMGWKYGQLIRSQEQQRKIKSAQDYEQRKELAKLKKKAIEN-AD-LSDVTPVLEASGY 211
            F+K++VIDGKGHLLGRLAS+IAK+ LNGQ+IVVVRCEE+++SG   RN+  +  YL KR   NP  GPFH RAP  IL KAIRGM+P KT RG  A+ R+K +EG+P  Y +VKRMV+P+ALR   L+   KYT IG ++ E+GWKY  ++   E++RK KSA  ++++  LA ++KKA+E+ AD L DV   + A GY
Sbjct:    4 FEKQLVIDGKGHLLGRLASIIAKQALNGQKIVVVRCEELNVSGEFFRNKLKYHAYLNKRCLVNPTRGPFHFRAPSRILYKAIRGMIPHKTSRGAAALDRIKLFEGVPAPYDRVKRMVIPDALRVLRLKPGRKYTTIGRISHEVGWKYQDVVAKLEEKRKAKSAAYFQRKTALAAIQKKAVESKADALKDVNTSIAALGY 202          
BLAST of Ggra8527.t1 vs. uniprot
Match: LOW QUALITY PROTEIN: 60S ribosomal protein L13a-like n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI0010FCB482 (LOW QUALITY PROTEIN: 60S ribosomal protein L13a-like n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI0010FCB482)

HSP 1 Score: 202 bits (513), Expect = 1.610e-62
Identity = 104/200 (52.00%), Postives = 148/200 (74.00%), Query Frame = 0
Query:   14 MFQKRVVIDGKGHLLGRLASVIAKELLNGQEIVVVRCEEIDISGTRHRNRRNFQNYLQKRTNTNPKWGPFHHRAPRMILTKAIRGMLPRKTHRGELAMARLKAYEGIPPTYAQVKRMVVPNALRATHLRTSSKYTNIGVLAGEMGWKYGQLIRSQEQQRKIKSAQDYEQRKELAKLKKKAIENA--DLSDVTPVLEASGY 211
            +F+K ++ID KGHLLGRLAS +AK LL GQ +V+VRCE I+ISG  +RN+  + ++L+KRTNTNP+ GPFH RAP  I+ + IRGM+P KT RG+ AM RLK Y+G+PP YA+ KR+VVP ALR   L+   K+  +G L+ E+GW + ++I + E++RK +SA  YE++ +L KL+K+A+EN   +L +V  VLE+ GY
Sbjct:    2 VFEKSIIIDAKGHLLGRLASTVAKSLLCGQRMVLVRCELINISGNFYRNKLKYLDFLRKRTNTNPRRGPFHFRAPSKIIWRTIRGMIPYKTKRGQDAMKRLKVYDGVPPMYAKKKRLVVPAALRVVRLKPGRKFCVLGRLSHEVGWNFKKVIEALEEKRKAESAVYYERKMKLKKLRKEAMENKAEELKEVNKVLESYGY 201          
BLAST of Ggra8527.t1 vs. uniprot
Match: A0A1E4SWU7 (Uncharacterized protein n=1 Tax=[Candida] arabinofermentans NRRL YB-2248 TaxID=983967 RepID=A0A1E4SWU7_9ASCO)

HSP 1 Score: 201 bits (512), Expect = 2.210e-62
Identity = 107/199 (53.77%), Postives = 138/199 (69.35%), Query Frame = 0
Query:   13 NMFQKRVVIDGKGHLLGRLASVIAKELLNGQEIVVVRCEEIDISGTRHRNRRNFQNYLQKRTNTNPKWGPFHHRAPRMILTKAIRGMLPRKTHRGELAMARLKAYEGIPPTYAQVKRMVVPNALRATHLRTSSKYTNIGVLAGEMGWKYGQLIRSQEQQRKIKSAQDYEQRKELAKLKKKAIENADLSDVTPVLEASGY 211
            N F+  VVIDGKGHLLGRLAS IAKELLNGQ++VVVRCE ++ISG   RN+  + +YL+K T  N K GPFH RAP  IL KAIRGM+P KT RG+ AM RLK +EG+PP Y + KR+VVP ALR   L+   KYT +G L+  +GWKY  ++ S E++RK++SA+ Y ++K L K    A  +   S+ +  L A GY
Sbjct:    2 NSFEPVVVIDGKGHLLGRLASTIAKELLNGQKVVVVRCEALNISGEFFRNKLKYHDYLRKATRFNTKRGPFHFRAPSRILYKAIRGMMPHKTARGKAAMERLKVFEGVPPPYDKKKRVVVPQALRVLRLKPGRKYTTVGKLSSAVGWKYESIVDSLEEKRKVRSAEYYSKKKALTKKVAAAKASVAESEASAKLAALGY 200          
The following BLAST results are available for this feature:
BLAST of Ggra8527.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J4L03.810e-11984.8560S ribosomal protein L16-A n=1 Tax=Gracilariopsis... [more]
R7Q8F12.650e-10376.26Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
M2Y8981.320e-6753.6160S ribosomal protein L13A n=1 Tax=Galdieria sulph... [more]
A0A7S2RKC95.710e-6755.05Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A397TRH13.560e-6451.7660S ribosomal protein L16 n=8 Tax=Eukaryota TaxID=... [more]
A0A5J4Z3W88.930e-6453.5460S ribosomal protein L13a n=1 Tax=Porphyridium pu... [more]
A0A1X6NR993.610e-6352.02Uncharacterized protein n=2 Tax=Porphyra umbilical... [more]
A0A1C7NER94.100e-6354.2760S ribosomal protein L16 n=35 Tax=Mucorineae TaxI... [more]
LOW QUALITY PROTEIN: 60S ribosomal protein L13a-like n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI0010FCB4821.610e-6252.00LOW QUALITY PROTEIN: 60S ribosomal protein L13a-li... [more]
A0A1E4SWU72.210e-6253.77Uncharacterized protein n=1 Tax=[Candida] arabinof... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 177..197
NoneNo IPR availableGENE3D6.10.250.3250coord: 164..211
e-value: 1.2E-5
score: 27.5
IPR005755Ribosomal protein L13, eukaryotic/archaealTIGRFAMTIGR01077TIGR01077coord: 19..161
e-value: 6.7E-50
score: 167.1
IPR005755Ribosomal protein L13, eukaryotic/archaealPANTHERPTHR11545:SF360S RIBOSOMAL PROTEIN L13A-RELATEDcoord: 14..198
IPR005822Ribosomal protein L13PFAMPF00572Ribosomal_L13coord: 17..121
e-value: 7.2E-26
score: 90.6
IPR005822Ribosomal protein L13PANTHERPTHR11545RIBOSOMAL PROTEIN L13coord: 14..198
IPR005822Ribosomal protein L13HAMAPMF_01366Ribosomal_L13coord: 18..151
score: 19.133007
IPR005822Ribosomal protein L13CDDcd00392Ribosomal_L13coord: 19..120
e-value: 6.49124E-38
score: 125.695
IPR036899Ribosomal protein L13 superfamilyGENE3D3.90.1180.10Ribosomal protein L13coord: 13..161
e-value: 2.3E-50
score: 172.3
IPR036899Ribosomal protein L13 superfamilySUPERFAMILY52161Ribosomal protein L13coord: 19..161
IPR023563Ribosomal protein L13, conserved sitePROSITEPS00783RIBOSOMAL_L13coord: 96..119

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000191_piloncontigtig00000191_pilon:98400..99172 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8527.t1Ggra8527.t1Gracilaria gracilis GNS1m malemRNAtig00000191_pilon 98400..99172 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8527.t1 ID=Ggra8527.t1|Name=Ggra8527.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=212bp
LLEDSARRKAIANMFQKRVVIDGKGHLLGRLASVIAKELLNGQEIVVVRC
EEIDISGTRHRNRRNFQNYLQKRTNTNPKWGPFHHRAPRMILTKAIRGML
PRKTHRGELAMARLKAYEGIPPTYAQVKRMVVPNALRATHLRTSSKYTNI
GVLAGEMGWKYGQLIRSQEQQRKIKSAQDYEQRKELAKLKKKAIENADLS
DVTPVLEASGY*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005755Ribosomal_L13_euk/arc
IPR005822Ribosomal_L13
IPR036899Ribosomal_L13_sf
IPR023563Ribosomal_L13_CS