Ggra8527.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8527.t1
Unique NameGgra8527.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length212
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000191_piloncontigtig00000191_pilon:98400..99172 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708584.1
Preferred nameRPL13A
PFAMsRibosomal_L13
Max annot lvl2759|Eukaryota
KEGG rclassRC01978
KEGG koko:K02872,ko:K03644
KEGG ReactionR07767,R07768
KEGG Pathwayko00785,ko01100,ko03010,map00785,map01100,map03010
KEGG ModuleM00177
GOsGO:0000184,GO:0000956,GO:0002181,GO:0002237,GO:0002376,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006417,GO:0006446,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006928,GO:0006935,GO:0006950,GO:0006952,GO:0006955,GO:0007154,GO:0007165,GO:0007166,GO:0007219,GO:0007275,GO:0007423,GO:0008104,GO:0008150,GO:0008152,GO:0008407,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009653,GO:0009719,GO:0009887,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010033,GO:0010212,GO:0010224,GO:0010243,GO:0010332,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0014070,GO:0014074,GO:0015031,GO:0015833,GO:0015934,GO:0016070,GO:0016071,GO:0016477,GO:0017148,GO:0019222,GO:0019439,GO:0019538,GO:0022416,GO:0022625,GO:0022626,GO:0023052,GO:0030323,GO:0030324,GO:0030595,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031333,GO:0032268,GO:0032269,GO:0032496,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0033993,GO:0034097,GO:0034248,GO:0034249,GO:0034341,GO:0034613,GO:0034641,GO:0034644,GO:0034645,GO:0034655,GO:0035295,GO:0040011,GO:0042221,GO:0042330,GO:0042592,GO:0042886,GO:0043043,GO:0043170,GO:0043207,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043254,GO:0043603,GO:0043604,GO:0044087,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045087,GO:0045184,GO:0045947,GO:0046483,GO:0046683,GO:0046700,GO:0046907,GO:0048246,GO:0048513,GO:0048519,GO:0048523,GO:0048731,GO:0048856,GO:0048870,GO:0050789,GO:0050794,GO:0050896,GO:0050900,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051246,GO:0051248,GO:0051591,GO:0051641,GO:0051649,GO:0051674,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0060326,GO:0060425,GO:0060541,GO:0065007,GO:0065008,GO:0070727,GO:0070887,GO:0070972,GO:0071214,GO:0071310,GO:0071320,GO:0071345,GO:0071346,GO:0071407,GO:0071417,GO:0071478,GO:0071479,GO:0071480,GO:0071482,GO:0071493,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0072594,GO:0072599,GO:0072657,GO:0080090,GO:0090150,GO:0090304,GO:0097159,GO:0097452,GO:0097529,GO:0104004,GO:1901193,GO:1901194,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1904688,GO:1904689,GO:1905517,GO:1990904,GO:2000112,GO:2000113,GO:2000765,GO:2000766
Evalue4.6e-68
EggNOG OGsCOG0102@1|root,KOG3204@2759|Eukaryota
EC2.8.1.8
DescriptionBelongs to the universal ribosomal protein uL13 family
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8527Ggra8527Gracilaria gracilis GNS1m malegenetig00000191_pilon 98400..99172 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8527.t1Ggra8527.t1Gracilaria gracilis GNS1m malepolypeptidetig00000191_pilon 98400..99172 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8527.t1.start1Ggra8527.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000191_pilon 98400..98402 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8527.t1.CDS1Ggra8527.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000191_pilon 98400..98427 +
Ggra8527.t1.CDS2Ggra8527.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000191_pilon 98565..99172 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8527.t1.exon1Ggra8527.t1.exon1Gracilaria gracilis GNS1m maleexontig00000191_pilon 98400..98427 +
Ggra8527.t1.exon2Ggra8527.t1.exon2Gracilaria gracilis GNS1m maleexontig00000191_pilon 98565..99172 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8527.t1.intron1Ggra8527.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000191_pilon 98428..98564 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8527.t1.stop1Ggra8527.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000191_pilon 99170..99172 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8527.t1 ID=Ggra8527.t1|Name=Ggra8527.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=212bp
LLEDSARRKAIANMFQKRVVIDGKGHLLGRLASVIAKELLNGQEIVVVRC
EEIDISGTRHRNRRNFQNYLQKRTNTNPKWGPFHHRAPRMILTKAIRGML
PRKTHRGELAMARLKAYEGIPPTYAQVKRMVVPNALRATHLRTSSKYTNI
GVLAGEMGWKYGQLIRSQEQQRKIKSAQDYEQRKELAKLKKKAIENADLS
DVTPVLEASGY*
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spliced messenger RNA

>Ggra8527.t1 ID=Ggra8527.t1|Name=Ggra8527.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=636bp|location=Sequence derived from alignment at tig00000191_pilon:98400..99172+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
TTGCTAGAAGACTCGGCAAGGCGAAAAGCTATTGCAAATATGTTTCAGAA
GCGAGTCGTCATCGATGGCAAGGGCCACCTCCTAGGCCGTCTAGCCTCCG
TCATTGCGAAAGAACTTCTCAATGGACAAGAGATCGTCGTCGTGCGCTGC
GAAGAAATTGACATCTCTGGAACACGTCATCGCAACCGCAGGAACTTCCA
GAACTACCTTCAGAAGCGCACCAACACCAACCCCAAATGGGGACCCTTCC
ATCATCGTGCGCCGCGTATGATTCTCACCAAGGCCATTCGCGGAATGCTT
CCACGAAAGACGCACCGTGGTGAGCTTGCCATGGCCAGACTGAAGGCTTA
TGAAGGTATTCCGCCCACGTATGCGCAGGTGAAGAGAATGGTCGTTCCCA
ACGCTCTGCGTGCTACCCATTTGCGCACGAGCTCTAAGTACACTAACATT
GGCGTTCTTGCGGGTGAAATGGGATGGAAGTATGGCCAACTCATCAGATC
TCAGGAACAACAGCGAAAGATCAAGAGTGCTCAAGATTATGAACAGCGTA
AGGAACTGGCTAAGCTTAAGAAGAAGGCGATTGAGAACGCTGATCTTTCG
GACGTTACCCCCGTACTTGAAGCCTCTGGTTACTAG
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protein sequence of Ggra8527.t1

>Ggra8527.t1 ID=Ggra8527.t1|Name=Ggra8527.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=212bp
LLEDSARRKAIANMFQKRVVIDGKGHLLGRLASVIAKELLNGQEIVVVRC
EEIDISGTRHRNRRNFQNYLQKRTNTNPKWGPFHHRAPRMILTKAIRGML
PRKTHRGELAMARLKAYEGIPPTYAQVKRMVVPNALRATHLRTSSKYTNI
GVLAGEMGWKYGQLIRSQEQQRKIKSAQDYEQRKELAKLKKKAIENADLS
DVTPVLEASGY*
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mRNA from alignment at tig00000191_pilon:98400..99172+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8527.t1 ID=Ggra8527.t1|Name=Ggra8527.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=773bp|location=Sequence derived from alignment at tig00000191_pilon:98400..99172+ (Gracilaria gracilis GNS1m male)
TTGCTAGAAGACTCGGCAAGGCGAAAAGGTAAGTGAAGGAAGTTATTGCG
TCCCTGTTCTTATCCGTTCCGCGTGTTCCTTCAATGTGCAGACTTTGAGA
TCTGGCGCAATTCCGCACCAAATCGCATCAATATGTGCTAACAAACCGCC
CGTCATCTACGATAGCTATTGCAAATATGTTTCAGAAGCGAGTCGTCATC
GATGGCAAGGGCCACCTCCTAGGCCGTCTAGCCTCCGTCATTGCGAAAGA
ACTTCTCAATGGACAAGAGATCGTCGTCGTGCGCTGCGAAGAAATTGACA
TCTCTGGAACACGTCATCGCAACCGCAGGAACTTCCAGAACTACCTTCAG
AAGCGCACCAACACCAACCCCAAATGGGGACCCTTCCATCATCGTGCGCC
GCGTATGATTCTCACCAAGGCCATTCGCGGAATGCTTCCACGAAAGACGC
ACCGTGGTGAGCTTGCCATGGCCAGACTGAAGGCTTATGAAGGTATTCCG
CCCACGTATGCGCAGGTGAAGAGAATGGTCGTTCCCAACGCTCTGCGTGC
TACCCATTTGCGCACGAGCTCTAAGTACACTAACATTGGCGTTCTTGCGG
GTGAAATGGGATGGAAGTATGGCCAACTCATCAGATCTCAGGAACAACAG
CGAAAGATCAAGAGTGCTCAAGATTATGAACAGCGTAAGGAACTGGCTAA
GCTTAAGAAGAAGGCGATTGAGAACGCTGATCTTTCGGACGTTACCCCCG
TACTTGAAGCCTCTGGTTACTAG
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Coding sequence (CDS) from alignment at tig00000191_pilon:98400..99172+

>Ggra8527.t1 ID=Ggra8527.t1|Name=Ggra8527.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=636bp|location=Sequence derived from alignment at tig00000191_pilon:98400..99172+ (Gracilaria gracilis GNS1m male)
TTGCTAGAAGACTCGGCAAGGCGAAAAGCTATTGCAAATATGTTTCAGAA
GCGAGTCGTCATCGATGGCAAGGGCCACCTCCTAGGCCGTCTAGCCTCCG
TCATTGCGAAAGAACTTCTCAATGGACAAGAGATCGTCGTCGTGCGCTGC
GAAGAAATTGACATCTCTGGAACACGTCATCGCAACCGCAGGAACTTCCA
GAACTACCTTCAGAAGCGCACCAACACCAACCCCAAATGGGGACCCTTCC
ATCATCGTGCGCCGCGTATGATTCTCACCAAGGCCATTCGCGGAATGCTT
CCACGAAAGACGCACCGTGGTGAGCTTGCCATGGCCAGACTGAAGGCTTA
TGAAGGTATTCCGCCCACGTATGCGCAGGTGAAGAGAATGGTCGTTCCCA
ACGCTCTGCGTGCTACCCATTTGCGCACGAGCTCTAAGTACACTAACATT
GGCGTTCTTGCGGGTGAAATGGGATGGAAGTATGGCCAACTCATCAGATC
TCAGGAACAACAGCGAAAGATCAAGAGTGCTCAAGATTATGAACAGCGTA
AGGAACTGGCTAAGCTTAAGAAGAAGGCGATTGAGAACGCTGATCTTTCG
GACGTTACCCCCGTACTTGAAGCCTCTGGTTACTAG
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