Ggra850.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra850.t1
Unique NameGgra850.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length241
Homology
BLAST of Ggra850.t1 vs. uniprot
Match: A0A2V3J2S5 (Dr1-associated corepressor n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J2S5_9FLOR)

HSP 1 Score: 145 bits (365), Expect = 1.780e-39
Identity = 78/105 (74.29%), Postives = 85/105 (80.95%), Query Frame = 0
Query:    1 MGRRKGTSAFPVARIKKMMQSDDDVGKIATVTPVLVAKALECMMENVLQEAADVAISRHTSTVTPQHLKACVMRNDSFDFLRHVFNRVDTLQDDAPEPPVRRRRR 105
            MGRRKGTSAFPVARIKKMMQ+D++VGKIAT TPVLVAKALECMME VL EAA  A SR T+T+TPQHLK  VMRNDSFDFLR +F+ VD   DD    P  RRRR
Sbjct:    1 MGRRKGTSAFPVARIKKMMQADEEVGKIATATPVLVAKALECMMEYVLHEAAQEARSRSTTTLTPQHLKLAVMRNDSFDFLRPLFSAVDLRTDDNHASPRPRRRR 105          
BLAST of Ggra850.t1 vs. uniprot
Match: R7QK66 (CBFD_NFYB_HMF domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QK66_CHOCR)

HSP 1 Score: 143 bits (361), Expect = 3.010e-39
Identity = 75/103 (72.82%), Postives = 82/103 (79.61%), Query Frame = 0
Query:    1 MGRRKGTSAFPVARIKKMMQSDDDVGKIATVTPVLVAKALECMMENVLQEAADVAISRHTSTVTPQHLKACVMRNDSFDFLRHVFNRVDTLQDDAPEPPVRRR 103
            MGRRKGTSAFPVARIKKMMQSD++VGKIATVTPVLVAKALECMME+VL+EAADVA  RHT TVTP HLK CV RND+FDFLR +   V   +      P  RR
Sbjct:    1 MGRRKGTSAFPVARIKKMMQSDEEVGKIATVTPVLVAKALECMMEDVLREAADVARERHTRTVTPLHLKTCVARNDAFDFLRPIVRHVSGDEGKRARSPADRR 103          
BLAST of Ggra850.t1 vs. uniprot
Match: A0A7S1T9N3 (Hypothetical protein (Fragment) n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1T9N3_9RHOD)

HSP 1 Score: 103 bits (256), Expect = 1.770e-24
Identity = 53/99 (53.54%), Postives = 77/99 (77.78%), Query Frame = 0
Query:    1 MGRRKGTSAFPVARIKKMMQSDDDVGKIATVTPVLVAKALECMMENVLQEAADVAISRHTSTVTPQHLKACVMRNDSFDFLR-HVFNRVDTLQ-DDAPE 97
            MGRR+G + FP+ARIKKMMQSD++VGKIAT  P+L++KALE M+E+++ ++A VA +R   TV P+H K C+MR + FDFL+ +V N +D ++ +D PE
Sbjct:    1 MGRRRGGTVFPLARIKKMMQSDEEVGKIATGAPLLLSKALELMLEDLVTQSAMVAKARGAQTVAPRHFKECIMRENLFDFLKGNVENVLDMVEAEDVPE 99          
BLAST of Ggra850.t1 vs. uniprot
Match: A0A7S0XJ73 (Hypothetical protein n=1 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0XJ73_9RHOD)

HSP 1 Score: 107 bits (267), Expect = 1.810e-24
Identity = 52/96 (54.17%), Postives = 71/96 (73.96%), Query Frame = 0
Query:    1 MGRRKGTSAFPVARIKKMMQSDDDVGKIATVTPVLVAKALECMMENVLQEAADVAISRHTSTVTPQHLKACVMRNDSFDFLRHVFNRVDTLQDDAP 96
            MG+++ + AFPVARIKKMMQSD+DVGKIAT  P+LVAKALE ++E++++ AA VA      T++PQHLK  V +N++FDFL ++F  V  L    P
Sbjct:    1 MGKKRASVAFPVARIKKMMQSDEDVGKIATGAPLLVAKALEVVLEDLIRSAAGVATQCKARTISPQHLKQTVFQNEAFDFLHNIFEHVPALDQQPP 96          
BLAST of Ggra850.t1 vs. uniprot
Match: A0A1X6PFB2 (CBFD_NFYB_HMF domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PFB2_PORUM)

HSP 1 Score: 108 bits (269), Expect = 2.950e-23
Identity = 53/97 (54.64%), Postives = 73/97 (75.26%), Query Frame = 0
Query:    1 MGRRKG-TSAFPVARIKKMMQSDDDVGKIATVTPVLVAKALECMMENVLQEAADVAISRHTSTVTPQHLKACVMRNDSFDFLRHVFNRVDTLQDDAP 96
            MGRRK  T+AFP +RIKKMMQ+D+DVGK+AT TP+LV KALE ++++++ +AA VA  R   T+TP HLK+ V  +D+FDFL+ +F RV  L+   P
Sbjct:    1 MGRRKSSTAAFPPSRIKKMMQADEDVGKVATATPILVGKALEMLLQDLITQAAGVASGRRAKTLTPAHLKSTVHADDTFDFLKSIFERVPDLESKPP 97          
BLAST of Ggra850.t1 vs. uniprot
Match: A0A3S3NWN1 (Dr1-associated corepressor-like protein n=1 Tax=Dinothrombium tinctorium TaxID=1965070 RepID=A0A3S3NWN1_9ACAR)

HSP 1 Score: 93.2 bits (230), Expect = 1.440e-20
Identity = 43/95 (45.26%), Postives = 67/95 (70.53%), Query Frame = 0
Query:    3 RRKGTSAFPVARIKKMMQSDDDVGKIATVTPVLVAKALECMMENVLQEAADVAISRHTSTVTPQHLKACVMRNDSFDFLRHVFNRVDTLQDDAPE 97
            ++K  S FP ARIKK+MQ+D++VGK+A V PV++++ALE  +E +L+E+  + ISR+  T+TP HLKA ++ ND F FL+ V + +  +Q    E
Sbjct:    5 KKKYDSRFPPARIKKIMQTDEEVGKVAAVVPVIISRALEMFVETLLKESRKITISRNARTLTPTHLKASILGNDQFAFLKDVVSSIPDIQQSGDE 99          
BLAST of Ggra850.t1 vs. uniprot
Match: dr1-associated corepressor isoform X2 n=1 Tax=Polyodon spathula TaxID=7913 RepID=UPI001B7EB5DC (dr1-associated corepressor isoform X2 n=1 Tax=Polyodon spathula TaxID=7913 RepID=UPI001B7EB5DC)

HSP 1 Score: 90.9 bits (224), Expect = 1.140e-18
Identity = 46/120 (38.33%), Postives = 72/120 (60.00%), Query Frame = 0
Query:    3 RRKGTSAFPVARIKKMMQSDDDVGKIATVTPVLVAKALECMMENVLQEAADVAISRHTSTVTPQHLKACVMRNDSFDFLRHVFNRVDTLQDDAPEPPVRRRRR---HPRQPASATPNSSS 119
            ++K  + FP ARIKK+MQ+D+++GK+A   PV++++ALE  +E++L +A  V  SR+  T+T  HLK C+     FDFL+ +   V  +Q D  +PP  R  R     R+P S   N  +
Sbjct:    5 KKKYNARFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLTKACQVTQSRNAKTMTSSHLKQCIELEQQFDFLKDLVAAVPDMQGDGEDPPAERGERGARRGRKPGSGRKNGGA 124          
BLAST of Ggra850.t1 vs. uniprot
Match: dr1-associated corepressor-like n=4 Tax=Acipenseroidei TaxID=186622 RepID=UPI00155FD878 (dr1-associated corepressor-like n=4 Tax=Acipenseroidei TaxID=186622 RepID=UPI00155FD878)

HSP 1 Score: 90.1 bits (222), Expect = 2.420e-18
Identity = 46/120 (38.33%), Postives = 72/120 (60.00%), Query Frame = 0
Query:    3 RRKGTSAFPVARIKKMMQSDDDVGKIATVTPVLVAKALECMMENVLQEAADVAISRHTSTVTPQHLKACVMRNDSFDFLRHVFNRVDTLQDDAPEPPV---RRRRRHPRQPASATPNSSS 119
            ++K  + FP ARIKK+MQ+D+++GK+A   PV++++ALE  +E++L +A  V  SR+  T+T  HLK C+     FDFL+ +   V  +Q D  +PP     R  R  R+P S   N  +
Sbjct:    5 KKKYNARFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLTKACHVTQSRNAKTMTSSHLKQCIELEQQFDFLKDLVAAVPDMQGDGEDPPTDRGERGARRGRKPGSGRKNGGA 124          
BLAST of Ggra850.t1 vs. uniprot
Match: A0A1D2N5Z4 (Dr1-associated corepressor n=1 Tax=Orchesella cincta TaxID=48709 RepID=A0A1D2N5Z4_ORCCI)

HSP 1 Score: 92.0 bits (227), Expect = 2.760e-18
Identity = 42/92 (45.65%), Postives = 65/92 (70.65%), Query Frame = 0
Query:    3 RRKGTSAFPVARIKKMMQSDDDVGKIATVTPVLVAKALECMMENVLQEAADVAISRHTSTVTPQHLKACVMRNDSFDFLRHVFNRVDTLQDD 94
            ++K  + FP ARIKK+MQSD++VGK+A   PV++++ALE  +E++L++A  V  SR+  T+TP HLK C+M    FDFL+ V + +  +Q D
Sbjct:    5 KKKYNARFPPARIKKIMQSDEEVGKVAQAVPVIISRALELFVESLLKKAEGVTHSRNAKTLTPSHLKQCIMAEQRFDFLKDVVSAIPDVQGD 96          
BLAST of Ggra850.t1 vs. uniprot
Match: A0A7K6AE98 (NC2A protein (Fragment) n=3 Tax=root TaxID=1 RepID=A0A7K6AE98_ONYCO)

HSP 1 Score: 86.7 bits (213), Expect = 3.350e-18
Identity = 39/96 (40.62%), Postives = 64/96 (66.67%), Query Frame = 0
Query:    3 RRKGTSAFPVARIKKMMQSDDDVGKIATVTPVLVAKALECMMENVLQEAADVAISRHTSTVTPQHLKACVMRNDSFDFLRHVFNRVDTLQDDAPEP 98
            ++K  + FP ARIKK+MQ+D+++GK+A   PV++++ALE  +E++L++A  V  SR+  T+T  HLK C+     FDFL+ +   V  +Q D  +P
Sbjct:    5 KKKYNARFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLRKACHVTQSRNAKTMTTSHLKQCIELEQQFDFLKDLVAAVPDMQGDGDDP 100          
The following BLAST results are available for this feature:
BLAST of Ggra850.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J2S51.780e-3974.29Dr1-associated corepressor n=1 Tax=Gracilariopsis ... [more]
R7QK663.010e-3972.82CBFD_NFYB_HMF domain-containing protein n=1 Tax=Ch... [more]
A0A7S1T9N31.770e-2453.54Hypothetical protein (Fragment) n=1 Tax=Compsopogo... [more]
A0A7S0XJ731.810e-2454.17Hypothetical protein n=1 Tax=Erythrolobus madagasc... [more]
A0A1X6PFB22.950e-2354.64CBFD_NFYB_HMF domain-containing protein n=1 Tax=Po... [more]
A0A3S3NWN11.440e-2045.26Dr1-associated corepressor-like protein n=1 Tax=Di... [more]
dr1-associated corepressor isoform X2 n=1 Tax=Polyodon spathula TaxID=7913 RepID=UPI001B7EB5DC1.140e-1838.33dr1-associated corepressor isoform X2 n=1 Tax=Poly... [more]
dr1-associated corepressor-like n=4 Tax=Acipenseroidei TaxID=186622 RepID=UPI00155FD8782.420e-1838.33dr1-associated corepressor-like n=4 Tax=Acipensero... [more]
A0A1D2N5Z42.760e-1845.65Dr1-associated corepressor n=1 Tax=Orchesella cinc... [more]
A0A7K6AE983.350e-1840.63NC2A protein (Fragment) n=3 Tax=root TaxID=1 RepID... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009072Histone-foldGENE3D1.10.20.10Histone, subunit Acoord: 2..87
e-value: 1.3E-23
score: 85.3
IPR009072Histone-foldSUPERFAMILY47113Histone-foldcoord: 6..86
IPR003958Transcription factor CBF/NF-Y/archaeal histone domainPFAMPF00808CBFD_NFYB_HMFcoord: 10..72
e-value: 1.6E-14
score: 53.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 110..147
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 184..200
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 91..240
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 162..176
NoneNo IPR availablePANTHERPTHR10252HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATEDcoord: 7..138
IPR027116Negative cofactor 2 complex subunit alpha/DNA polymerase epsilon subunit CPANTHERPTHR10252:SF5DR1-ASSOCIATED COREPRESSORcoord: 7..138

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000202_piloncontigtig00000202_pilon:101955..102677 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra850.t1Ggra850.t1Gracilaria gracilis GNS1m malemRNAtig00000202_pilon 101955..102677 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra850.t1 ID=Ggra850.t1|Name=Ggra850.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=241bp
MGRRKGTSAFPVARIKKMMQSDDDVGKIATVTPVLVAKALECMMENVLQE
AADVAISRHTSTVTPQHLKACVMRNDSFDFLRHVFNRVDTLQDDAPEPPV
RRRRRHPRQPASATPNSSSDSPSFPLNKRPRSPSSPTSPNQHQPKVHRTA
ASIELPSLPSFRTLPQPLPHPSSAPPILSSTAPNDDDEDYDEDDQDQPDA
VATEPDTSVPPRSNDDAASPTVEINPKRTADRVSVQALLS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009072Histone-fold
IPR003958CBFA_NFYB_domain
IPR027116Bur6/Dpb3