Ggra850.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra850.t1
Unique NameGgra850.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length241
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000202_piloncontigtig00000202_pilon:101955..102677 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7668.SPU_020061-tr
Preferred nameDRAP1
PFAMsCBFD_NFYB_HMF
Max annot lvl33208|Metazoa
KEGG koko:K21752
GOsGO:0000122,GO:0000981,GO:0003674,GO:0003676,GO:0003677,GO:0003700,GO:0003712,GO:0003714,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006355,GO:0006357,GO:0008134,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0042802,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
Evalue1.99e-18
EggNOG OGsCOG5247@1|root,KOG1659@2759|Eukaryota,3A5QH@33154|Opisthokonta,3BIZR@33208|Metazoa,3D2PC@33213|Bilateria
Descriptionprotein heterodimerization activity
COG categoryK
BRITEko00000,ko03021
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra850Ggra850Gracilaria gracilis GNS1m malegenetig00000202_pilon 101955..102677 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra850.t1.stop1Ggra850.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000202_pilon 101955..101957 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra850.t1.CDS1Ggra850.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000202_pilon 101955..102677 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra850.t1.exon1Ggra850.t1.exon1Gracilaria gracilis GNS1m maleexontig00000202_pilon 101955..102677 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra850.t1.start1Ggra850.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000202_pilon 102675..102677 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra850.t1Ggra850.t1Gracilaria gracilis GNS1m malepolypeptidetig00000202_pilon 101955..102677 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra850.t1 ID=Ggra850.t1|Name=Ggra850.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=241bp
MGRRKGTSAFPVARIKKMMQSDDDVGKIATVTPVLVAKALECMMENVLQE
AADVAISRHTSTVTPQHLKACVMRNDSFDFLRHVFNRVDTLQDDAPEPPV
RRRRRHPRQPASATPNSSSDSPSFPLNKRPRSPSSPTSPNQHQPKVHRTA
ASIELPSLPSFRTLPQPLPHPSSAPPILSSTAPNDDDEDYDEDDQDQPDA
VATEPDTSVPPRSNDDAASPTVEINPKRTADRVSVQALLS*
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spliced messenger RNA

>Ggra850.t1 ID=Ggra850.t1|Name=Ggra850.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=723bp|location=Sequence derived from alignment at tig00000202_pilon:101955..102677- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCCGTCGAAAGGGCACTTCCGCATTCCCCGTCGCCCGCATCAAGAA
GATGATGCAGTCCGACGACGACGTCGGCAAGATAGCTACCGTCACCCCCG
TGCTGGTGGCCAAGGCACTGGAATGCATGATGGAGAACGTGTTGCAAGAA
GCCGCCGATGTCGCCATCTCTCGCCACACCTCCACCGTAACGCCCCAACA
TCTCAAGGCCTGCGTCATGAGAAACGATAGTTTTGACTTCCTTCGCCACG
TCTTCAATCGCGTCGACACGCTCCAGGATGATGCTCCCGAACCTCCGGTG
CGTCGTCGCCGCCGACACCCCAGACAGCCCGCCTCCGCCACCCCCAACTC
ATCGTCAGACTCGCCGTCATTCCCCCTCAACAAGCGGCCCCGCTCTCCGT
CATCTCCGACCTCCCCAAATCAACATCAACCCAAAGTGCATCGTACAGCT
GCTTCAATCGAGCTACCCTCTCTCCCCTCGTTCCGAACGCTACCACAGCC
TCTTCCGCATCCCTCGTCGGCGCCGCCTATTCTCTCATCCACAGCGCCGA
ACGACGATGATGAAGACTATGACGAAGATGATCAAGATCAACCCGATGCT
GTTGCCACGGAGCCAGACACCTCCGTGCCGCCGCGCTCCAATGACGACGC
CGCCTCGCCCACGGTTGAGATCAATCCCAAACGCACCGCCGACAGGGTCT
CAGTGCAAGCGCTCCTATCGTAA
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protein sequence of Ggra850.t1

>Ggra850.t1 ID=Ggra850.t1|Name=Ggra850.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=241bp
MGRRKGTSAFPVARIKKMMQSDDDVGKIATVTPVLVAKALECMMENVLQE
AADVAISRHTSTVTPQHLKACVMRNDSFDFLRHVFNRVDTLQDDAPEPPV
RRRRRHPRQPASATPNSSSDSPSFPLNKRPRSPSSPTSPNQHQPKVHRTA
ASIELPSLPSFRTLPQPLPHPSSAPPILSSTAPNDDDEDYDEDDQDQPDA
VATEPDTSVPPRSNDDAASPTVEINPKRTADRVSVQALLS*
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mRNA from alignment at tig00000202_pilon:101955..102677-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra850.t1 ID=Ggra850.t1|Name=Ggra850.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=723bp|location=Sequence derived from alignment at tig00000202_pilon:101955..102677- (Gracilaria gracilis GNS1m male)
ATGGGCCGTCGAAAGGGCACTTCCGCATTCCCCGTCGCCCGCATCAAGAA
GATGATGCAGTCCGACGACGACGTCGGCAAGATAGCTACCGTCACCCCCG
TGCTGGTGGCCAAGGCACTGGAATGCATGATGGAGAACGTGTTGCAAGAA
GCCGCCGATGTCGCCATCTCTCGCCACACCTCCACCGTAACGCCCCAACA
TCTCAAGGCCTGCGTCATGAGAAACGATAGTTTTGACTTCCTTCGCCACG
TCTTCAATCGCGTCGACACGCTCCAGGATGATGCTCCCGAACCTCCGGTG
CGTCGTCGCCGCCGACACCCCAGACAGCCCGCCTCCGCCACCCCCAACTC
ATCGTCAGACTCGCCGTCATTCCCCCTCAACAAGCGGCCCCGCTCTCCGT
CATCTCCGACCTCCCCAAATCAACATCAACCCAAAGTGCATCGTACAGCT
GCTTCAATCGAGCTACCCTCTCTCCCCTCGTTCCGAACGCTACCACAGCC
TCTTCCGCATCCCTCGTCGGCGCCGCCTATTCTCTCATCCACAGCGCCGA
ACGACGATGATGAAGACTATGACGAAGATGATCAAGATCAACCCGATGCT
GTTGCCACGGAGCCAGACACCTCCGTGCCGCCGCGCTCCAATGACGACGC
CGCCTCGCCCACGGTTGAGATCAATCCCAAACGCACCGCCGACAGGGTCT
CAGTGCAAGCGCTCCTATCGTAA
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Coding sequence (CDS) from alignment at tig00000202_pilon:101955..102677-

>Ggra850.t1 ID=Ggra850.t1|Name=Ggra850.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=723bp|location=Sequence derived from alignment at tig00000202_pilon:101955..102677- (Gracilaria gracilis GNS1m male)
ATGGGCCGTCGAAAGGGCACTTCCGCATTCCCCGTCGCCCGCATCAAGAA
GATGATGCAGTCCGACGACGACGTCGGCAAGATAGCTACCGTCACCCCCG
TGCTGGTGGCCAAGGCACTGGAATGCATGATGGAGAACGTGTTGCAAGAA
GCCGCCGATGTCGCCATCTCTCGCCACACCTCCACCGTAACGCCCCAACA
TCTCAAGGCCTGCGTCATGAGAAACGATAGTTTTGACTTCCTTCGCCACG
TCTTCAATCGCGTCGACACGCTCCAGGATGATGCTCCCGAACCTCCGGTG
CGTCGTCGCCGCCGACACCCCAGACAGCCCGCCTCCGCCACCCCCAACTC
ATCGTCAGACTCGCCGTCATTCCCCCTCAACAAGCGGCCCCGCTCTCCGT
CATCTCCGACCTCCCCAAATCAACATCAACCCAAAGTGCATCGTACAGCT
GCTTCAATCGAGCTACCCTCTCTCCCCTCGTTCCGAACGCTACCACAGCC
TCTTCCGCATCCCTCGTCGGCGCCGCCTATTCTCTCATCCACAGCGCCGA
ACGACGATGATGAAGACTATGACGAAGATGATCAAGATCAACCCGATGCT
GTTGCCACGGAGCCAGACACCTCCGTGCCGCCGCGCTCCAATGACGACGC
CGCCTCGCCCACGGTTGAGATCAATCCCAAACGCACCGCCGACAGGGTCT
CAGTGCAAGCGCTCCTATCGTAA
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