Ggra6942.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6942.t1
Unique NameGgra6942.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length132
Homology
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BLAST of Ggra6942.t1 vs. uniprot
Match: A0A2V3IS12 (Lipid phosphate phosphatase epsilon 1, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IS12_9FLOR)

HSP 1 Score: 92.8 bits (229), Expect = 7.920e-21
Identity = 51/108 (47.22%), Postives = 69/108 (63.89%), Query Frame = 0 
Query:    7 PKNKVLADVTKITVSAAVAGLVLYNHDAPTILYVMASLVNSASAKVLKFLIKQPRPDGADKGDP-----------VIYIASLPWAIPHLDLLMKGKAFTVTVVMLLVA 103
            P+N +LAD+TK TVS AVA  +LYNHDAPT+ YV AS+ NSA  K+LK LIKQPRPDG  K DP            + +A L +A  +++ L+K     + V++ L+A
Sbjct:   23 PRNTILADLTKYTVSIAVASCLLYNHDAPTLFYVTASVTNSAVGKILKLLIKQPRPDGTHKEDPGMPSSHATSLSFLSLAFLGYAANYMNSLIKTAGAGMLVILALIA 130
The following BLAST results are available for this feature:
BLAST of Ggra6942.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IS127.920e-2147.22Lipid phosphate phosphatase epsilon 1, chloroplast... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 92..116
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 30..47
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 18..29
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 117..131
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..47
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 48..91
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..17
NoneNo IPR availableTMHMMTMhelixcoord: 20..42
NoneNo IPR availableTMHMMTMhelixcoord: 93..115

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000115_piloncontigtig00000115_pilon:186315..187078 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6942.t1Ggra6942.t1Gracilaria gracilis GNS1m malemRNAtig00000115_pilon 186315..187078 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6942.t1 ID=Ggra6942.t1|Name=Ggra6942.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=132bp
MSSSPMPKNKVLADVTKITVSAAVAGLVLYNHDAPTILYVMASLVNSASA
KVLKFLIKQPRPDGADKGDPVIYIASLPWAIPHLDLLMKGKAFTVTVVML
LVAAVFIVGPDLLFLARRFSTLLRQRRSHET*
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