Ggra6942.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6942.t1
Unique NameGgra6942.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length132
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000115_piloncontigtig00000115_pilon:186315..187078 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog70448.Q010J2
PFAMsPAP2
Max annot lvl3041|Chlorophyta
KEGG rclassRC00002
KEGG koko:K07252
KEGG ReactionR01004
KEGG Pathwayko00510,map00510
Evalue2.75e-05
EggNOG OGsCOG0671@1|root,KOG3146@2759|Eukaryota,37MC6@33090|Viridiplantae,34ID8@3041|Chlorophyta
EC3.6.1.43
DescriptionLipid phosphate phosphatase epsilon
COG categoryI
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6942Ggra6942Gracilaria gracilis GNS1m malegenetig00000115_pilon 186315..187078 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6942.t1Ggra6942.t1Gracilaria gracilis GNS1m malepolypeptidetig00000115_pilon 186315..187078 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6942.t1.stop1Ggra6942.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000115_pilon 186315..186317 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6942.t1.CDS1Ggra6942.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000115_pilon 186315..186407 -
Ggra6942.t1.CDS2Ggra6942.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000115_pilon 186566..186657 -
Ggra6942.t1.CDS3Ggra6942.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000115_pilon 186868..187078 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6942.t1.exon1Ggra6942.t1.exon1Gracilaria gracilis GNS1m maleexontig00000115_pilon 186315..186407 -
Ggra6942.t1.exon2Ggra6942.t1.exon2Gracilaria gracilis GNS1m maleexontig00000115_pilon 186566..186657 -
Ggra6942.t1.exon3Ggra6942.t1.exon3Gracilaria gracilis GNS1m maleexontig00000115_pilon 186868..187078 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6942.t1.intron1Ggra6942.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000115_pilon 186408..186565 -
Ggra6942.t1.intron2Ggra6942.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000115_pilon 186658..186867 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6942.t1.start1Ggra6942.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000115_pilon 187076..187078 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6942.t1 ID=Ggra6942.t1|Name=Ggra6942.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=132bp
MSSSPMPKNKVLADVTKITVSAAVAGLVLYNHDAPTILYVMASLVNSASA
KVLKFLIKQPRPDGADKGDPVIYIASLPWAIPHLDLLMKGKAFTVTVVML
LVAAVFIVGPDLLFLARRFSTLLRQRRSHET*
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spliced messenger RNA

>Ggra6942.t1 ID=Ggra6942.t1|Name=Ggra6942.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=396bp|location=Sequence derived from alignment at tig00000115_pilon:186315..187078- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCTCCAGTCCGATGCCGAAGAATAAGGTGCTTGCCGATGTTACCAA
AATCACCGTGTCTGCAGCGGTAGCTGGTCTGGTTCTTTACAATCATGACG
CACCAACGATTCTCTATGTCATGGCCTCGCTGGTCAATTCTGCATCTGCT
AAAGTTCTTAAGTTTCTCATAAAGCAACCAAGACCTGATGGCGCGGACAA
GGGTGATCCAGTAATATACATTGCGTCTCTTCCATGGGCAATACCGCACC
TCGACCTGCTGATGAAGGGGAAGGCTTTCACCGTCACGGTTGTGATGCTC
TTGGTGGCAGCAGTGTTCATTGTGGGCCCTGACCTCTTATTTCTCGCTCG
CCGGTTTTCAACTTTGCTCCGACAACGCCGCTCTCATGAGACTTGA
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protein sequence of Ggra6942.t1

>Ggra6942.t1 ID=Ggra6942.t1|Name=Ggra6942.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=132bp
MSSSPMPKNKVLADVTKITVSAAVAGLVLYNHDAPTILYVMASLVNSASA
KVLKFLIKQPRPDGADKGDPVIYIASLPWAIPHLDLLMKGKAFTVTVVML
LVAAVFIVGPDLLFLARRFSTLLRQRRSHET*
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mRNA from alignment at tig00000115_pilon:186315..187078-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6942.t1 ID=Ggra6942.t1|Name=Ggra6942.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=764bp|location=Sequence derived from alignment at tig00000115_pilon:186315..187078- (Gracilaria gracilis GNS1m male)
ATGAGCTCCAGTCCGATGCCGAAGAATAAGGTGCTTGCCGATGTTACCAA
AATCACCGTGTCTGCAGCGGTAGCTGGTCTGGTTCTTTACAATCATGACG
CACCAACGATTCTCTATGTCATGGCCTCGCTGGTCAATTCTGCATCTGCT
AAAGTTCTTAAGTTTCTCATAAAGCAACCAAGACCTGATGGCGCGGACAA
GGGTGATCCAGGTATGCCATCGTCTCACGCAACGTCGTTGTCATTCTTGT
CGTTGGCACTTTTTGGGTATATGGGCTTGTACGCCAACTCCGTTTTAAAA
ACCGCTGGAGCTGGTGTCATTGTTCTTCTGTCAGTGTTGGCTTCGTACTG
GCGCATTTCGGCTGGATACCACACACGCCCACAAGTTGTTGTTGGTTGGC
TTGTTGGTTCGTTCAATACAGTAATATACATTGCGTCTCTTCCATGGGCA
ATACCGCACCTCGACCTGCTGATGAAGGGGAAGGCTTTCACCGTCACGGT
TGTGATGCTCTTGGTAAGTGGTTCAAGCTCCTGAACGCGTTCAACGGCCA
AGATCTGCAACTCTTTTAACGTTTCAGAACCGCTATGGACATGTACATAT
CTATAAGCGAAAGGACGTGCTGGCTGACATCGTTTCTCATTTCGAAATGG
GCAATTTTCTGCACTGTGCAGGTGGCAGCAGTGTTCATTGTGGGCCCTGA
CCTCTTATTTCTCGCTCGCCGGTTTTCAACTTTGCTCCGACAACGCCGCT
CTCATGAGACTTGA
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Coding sequence (CDS) from alignment at tig00000115_pilon:186315..187078-

>Ggra6942.t1 ID=Ggra6942.t1|Name=Ggra6942.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=396bp|location=Sequence derived from alignment at tig00000115_pilon:186315..187078- (Gracilaria gracilis GNS1m male)
ATGAGCTCCAGTCCGATGCCGAAGAATAAGGTGCTTGCCGATGTTACCAA
AATCACCGTGTCTGCAGCGGTAGCTGGTCTGGTTCTTTACAATCATGACG
CACCAACGATTCTCTATGTCATGGCCTCGCTGGTCAATTCTGCATCTGCT
AAAGTTCTTAAGTTTCTCATAAAGCAACCAAGACCTGATGGCGCGGACAA
GGGTGATCCAGTAATATACATTGCGTCTCTTCCATGGGCAATACCGCACC
TCGACCTGCTGATGAAGGGGAAGGCTTTCACCGTCACGGTTGTGATGCTC
TTGGTGGCAGCAGTGTTCATTGTGGGCCCTGACCTCTTATTTCTCGCTCG
CCGGTTTTCAACTTTGCTCCGACAACGCCGCTCTCATGAGACTTGA
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