Ggra6871.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6871.t1
Unique NameGgra6871.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length396
Homology
BLAST of Ggra6871.t1 vs. uniprot
Match: A0A2V3IRH5 (BTB domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IRH5_9FLOR)

HSP 1 Score: 312 bits (799), Expect = 5.860e-100
Identity = 176/411 (42.82%), Postives = 248/411 (60.34%), Query Frame = 0
Query:   41 VSDCPRQYA--PCDEQFRAFVVEQLLDADS-ARELCDVQLRTTDGHDVPACRALLAAHSAYFRTLFYSDFEEAVQSRADVNMNSLLLRHVLLFCYTGHCAFVDHLLKACASSPAELRLFPSHDQLPLLVRLSAAAEYHGLTLLHQWCDCALYTICQKFHASTCAVLQAMRQHAANHPAKLNLLHLIRNNAMLCFNVPPSVRANKS--SNA-----QYPYS----------------------------YASSRSSHASSRSAADATKYGVIQLSPDVFEQVLAANLPPDSQEYVLQCIFFWVTQGTALRRNTRKLRPRHEQQTPQQQP------------------QQDVLYVHPDRLQWGKRFAAKLSLKAMRIRFVHDFVIPTGLVDNVDLMDTLWNYVLSSTSAIQEV 395
            ++D P +Y+  P D+QFR+ ++  LL + + A ++CDV L T+D H VPACRALLA HS YFRTLF+S+F+++      + M S +L HVL F YTGHCA V  +L     SP     F  HD+L LLV L+AAA+Y+G  LLH+WCD AL+ IC +FHA+ C V+QAM  + A+HP++  L+ LIR+N    FNVP SV  + +  SNA     Q P +                            ++S   ++   +  +D   YG+++LSP V ++VL+ +L  ++ EY++QCIF+WVT+G+ LRR   KL+P     T ++                     Q ++ V  DR +WGK+F ++L LKAMRIRFVHDFVIPTGLV+NVDL+D LWNYVLS+T AI E+
Sbjct:   11 LTDFPEKYSYNPSDDQFRSHLLSTLLHSPTTAHKICDVVLITSDHHKVPACRALLAVHSEYFRTLFFSEFKQSEPDAIQLTMRSSVLHHVLTFAYTGHCALVRDMLD----SPHFSHFFRKHDELRLLVELAAAADYYGFVLLHRWCDSALHRICTRFHAAACTVVQAMSDNDASHPSRALLVKLIRSNCKTAFNVPQSVSDDSTFMSNAFMSFGQTPSTPQPVFVPRTDVFGAPLQSRRSEKNVITPFSSMPQTNPVQQVLSDPNTYGILELSPQVLDEVLSDSLASNTHEYLVQCIFYWVTRGSILRRKNCKLKPVKSSSTKREAACKSENTVNKKESKHSTCDSQQLILVDDDRFEWGKKFVSRLDLKAMRIRFVHDFVIPTGLVENVDLLDMLWNYVLSTTCAIAEL 417          
The following BLAST results are available for this feature:
BLAST of Ggra6871.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IRH55.860e-10042.82BTB domain-containing protein n=1 Tax=Gracilariops... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000210BTB/POZ domainSMARTSM00225BTB_4coord: 73..192
e-value: 2.8E-5
score: 33.6
IPR000210BTB/POZ domainPFAMPF00651BTBcoord: 70..138
e-value: 1.5E-12
score: 47.7
IPR000210BTB/POZ domainPROSITEPS50097BTBcoord: 73..140
score: 14.252943
IPR011333SKP1/BTB/POZ domain superfamilyGENE3D3.30.710.10Potassium Channel Kv1.1; Chain Acoord: 58..215
e-value: 9.5E-17
score: 63.3
IPR011333SKP1/BTB/POZ domain superfamilySUPERFAMILY54695POZ domaincoord: 47..188
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..31
NoneNo IPR availableCDDcd18186BTB_POZ_ZBTB_KLHL-likecoord: 72..146
e-value: 6.27414E-14
score: 64.8825

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:723501..724688 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6871.t1Ggra6871.t1Gracilaria gracilis GNS1m malemRNAtig00000056_pilon 723501..724688 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6871.t1 ID=Ggra6871.t1|Name=Ggra6871.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=396bp
MAPSPRNIYAEAPDSSQEDADNACSHERDPSDYSEYTYPVVSDCPRQYAP
CDEQFRAFVVEQLLDADSARELCDVQLRTTDGHDVPACRALLAAHSAYFR
TLFYSDFEEAVQSRADVNMNSLLLRHVLLFCYTGHCAFVDHLLKACASSP
AELRLFPSHDQLPLLVRLSAAAEYHGLTLLHQWCDCALYTICQKFHASTC
AVLQAMRQHAANHPAKLNLLHLIRNNAMLCFNVPPSVRANKSSNAQYPYS
YASSRSSHASSRSAADATKYGVIQLSPDVFEQVLAANLPPDSQEYVLQCI
FFWVTQGTALRRNTRKLRPRHEQQTPQQQPQQDVLYVHPDRLQWGKRFAA
KLSLKAMRIRFVHDFVIPTGLVDNVDLMDTLWNYVLSSTSAIQEV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000210BTB/POZ_dom
IPR011333SKP1/BTB/POZ_sf