Ggra6871.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6871.t1
Unique Name	Ggra6871.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	396

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000056_pilon	contig	tig00000056_pilon:723501..724688 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2850.Phatr49277
PFAMs	BTB
Max annot lvl	2836\|Bacillariophyta
Evalue	4.61e-06
EggNOG OGs	2CCEG@1\|root,2SX3D@2759\|Eukaryota,2XF3J@2836\|Bacillariophyta
Description	BTB/POZ domain
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6871	Ggra6871	Gracilaria gracilis GNS1m male	gene	tig00000056_pilon 723501..724688 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6871.t1.start1	Ggra6871.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000056_pilon 723501..723503 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6871.t1.CDS1	Ggra6871.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000056_pilon 723501..724688 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6871.t1.exon1	Ggra6871.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000056_pilon 723501..724688 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6871.t1.stop1	Ggra6871.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000056_pilon 724686..724688 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6871.t1	Ggra6871.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000056_pilon 723501..724688 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000056_pilon:723501..724688+
coding sequence from alignment at tig00000056_pilon:723501..724688+

mRNA sequence

>Ggra6871.t1 ID=Ggra6871.t1|Name=Ggra6871.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=396bp
MAPSPRNIYAEAPDSSQEDADNACSHERDPSDYSEYTYPVVSDCPRQYAP
CDEQFRAFVVEQLLDADSARELCDVQLRTTDGHDVPACRALLAAHSAYFR
TLFYSDFEEAVQSRADVNMNSLLLRHVLLFCYTGHCAFVDHLLKACASSP
AELRLFPSHDQLPLLVRLSAAAEYHGLTLLHQWCDCALYTICQKFHASTC
AVLQAMRQHAANHPAKLNLLHLIRNNAMLCFNVPPSVRANKSSNAQYPYS
YASSRSSHASSRSAADATKYGVIQLSPDVFEQVLAANLPPDSQEYVLQCI
FFWVTQGTALRRNTRKLRPRHEQQTPQQQPQQDVLYVHPDRLQWGKRFAA
KLSLKAMRIRFVHDFVIPTGLVDNVDLMDTLWNYVLSSTSAIQEV*

spliced messenger RNA

>Ggra6871.t1 ID=Ggra6871.t1|Name=Ggra6871.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1188bp|location=Sequence derived from alignment at tig00000056_pilon:723501..724688+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCCGAGCCCGCGCAACATCTACGCCGAAGCGCCGGACAGCTCGCA
GGAGGATGCGGACAACGCCTGTTCGCATGAGAGAGACCCGTCAGATTACT
CGGAGTACACGTACCCGGTGGTGTCCGACTGCCCGCGCCAGTACGCACCG
TGCGACGAGCAGTTTCGCGCCTTTGTGGTCGAGCAGCTGCTGGACGCCGA
CTCCGCGCGCGAGCTGTGCGACGTCCAGCTGCGTACCACCGACGGCCATG
ACGTGCCGGCGTGCCGCGCGCTGCTGGCCGCGCATAGCGCCTACTTTCGT
ACCCTCTTCTACTCCGACTTTGAGGAGGCCGTGCAGAGCCGTGCCGACGT
CAACATGAACAGCCTGCTGCTGCGCCACGTGCTGCTGTTCTGTTACACGG
GCCATTGCGCCTTTGTGGACCACTTGTTGAAGGCCTGCGCTTCCTCTCCT
GCCGAACTGCGCCTGTTTCCGAGCCATGATCAgctgccgctgctggtgcg
gctcagtgccgccgccgAGTACCACGGCCTCACACTGTTGCATCAATGGT
GTGACTGCGCCTTGTACACCATCTGCCAAAAGTTCCACGCCTCCACCTGC
GCCGTCTTACAGGCCATGCGCCAACACGCCGCCAACCATCCGGCCAAACT
CAACCTGCTCCACCTCATCCGAAACAACGCCATGCTCTGCTTCAACGTCC
CGCCCAGCGTGCGTGCCAACAAGTCGTCCAACGCTCAGTATCCGTATTCG
TACGCTTCTTCGCGCTCCTCGCACGCTTCTTCGCGCTCCGCTGCGGACGC
CACCAAGTACGGCGTCATTCAACTGTCGCCCGATGTGTTTGAGCAGGTGC
TTGCCGCCAACCTGCCGCCGGACAGCCAGGAGTACGTCCTTCAGTGCATC
TTCTTTTGGGTCACGCAGGGAACTGCCTTGAGGAGGAACACGCGTAAGCT
GCGTCCGCGCCACGagcaacagacaccgcaacagcaaccgcaacagGATG
TGCTTTACGTGCACCCAGATCGCCTGCAATGGGGAAAGCGCTTTGCTGCC
AAGCTCAGCCTTAAAGCTATGCGCATTCGCTTTGTGCACGACTTTGTCAT
TCCTACCGGCTTGGTAGACAACGTCGATCTCATGGATACGCTTTGGAATT
ATGTCTTGTCCTCCACCTCGGCCATTCAGGAGGTATAA

protein sequence of Ggra6871.t1

>Ggra6871.t1 ID=Ggra6871.t1|Name=Ggra6871.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=396bp
MAPSPRNIYAEAPDSSQEDADNACSHERDPSDYSEYTYPVVSDCPRQYAP
CDEQFRAFVVEQLLDADSARELCDVQLRTTDGHDVPACRALLAAHSAYFR
TLFYSDFEEAVQSRADVNMNSLLLRHVLLFCYTGHCAFVDHLLKACASSP
AELRLFPSHDQLPLLVRLSAAAEYHGLTLLHQWCDCALYTICQKFHASTC
AVLQAMRQHAANHPAKLNLLHLIRNNAMLCFNVPPSVRANKSSNAQYPYS
YASSRSSHASSRSAADATKYGVIQLSPDVFEQVLAANLPPDSQEYVLQCI
FFWVTQGTALRRNTRKLRPRHEQQTPQQQPQQDVLYVHPDRLQWGKRFAA
KLSLKAMRIRFVHDFVIPTGLVDNVDLMDTLWNYVLSSTSAIQEV*

mRNA from alignment at tig00000056_pilon:723501..724688+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6871.t1 ID=Ggra6871.t1|Name=Ggra6871.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1188bp|location=Sequence derived from alignment at tig00000056_pilon:723501..724688+ (Gracilaria gracilis GNS1m male)
ATGGCGCCGAGCCCGCGCAACATCTACGCCGAAGCGCCGGACAGCTCGCA
GGAGGATGCGGACAACGCCTGTTCGCATGAGAGAGACCCGTCAGATTACT
CGGAGTACACGTACCCGGTGGTGTCCGACTGCCCGCGCCAGTACGCACCG
TGCGACGAGCAGTTTCGCGCCTTTGTGGTCGAGCAGCTGCTGGACGCCGA
CTCCGCGCGCGAGCTGTGCGACGTCCAGCTGCGTACCACCGACGGCCATG
ACGTGCCGGCGTGCCGCGCGCTGCTGGCCGCGCATAGCGCCTACTTTCGT
ACCCTCTTCTACTCCGACTTTGAGGAGGCCGTGCAGAGCCGTGCCGACGT
CAACATGAACAGCCTGCTGCTGCGCCACGTGCTGCTGTTCTGTTACACGG
GCCATTGCGCCTTTGTGGACCACTTGTTGAAGGCCTGCGCTTCCTCTCCT
GCCGAACTGCGCCTGTTTCCGAGCCATGATCAgctgccgctgctggtgcg
gctcagtgccgccgccgAGTACCACGGCCTCACACTGTTGCATCAATGGT
GTGACTGCGCCTTGTACACCATCTGCCAAAAGTTCCACGCCTCCACCTGC
GCCGTCTTACAGGCCATGCGCCAACACGCCGCCAACCATCCGGCCAAACT
CAACCTGCTCCACCTCATCCGAAACAACGCCATGCTCTGCTTCAACGTCC
CGCCCAGCGTGCGTGCCAACAAGTCGTCCAACGCTCAGTATCCGTATTCG
TACGCTTCTTCGCGCTCCTCGCACGCTTCTTCGCGCTCCGCTGCGGACGC
CACCAAGTACGGCGTCATTCAACTGTCGCCCGATGTGTTTGAGCAGGTGC
TTGCCGCCAACCTGCCGCCGGACAGCCAGGAGTACGTCCTTCAGTGCATC
TTCTTTTGGGTCACGCAGGGAACTGCCTTGAGGAGGAACACGCGTAAGCT
GCGTCCGCGCCACGagcaacagacaccgcaacagcaaccgcaacagGATG
TGCTTTACGTGCACCCAGATCGCCTGCAATGGGGAAAGCGCTTTGCTGCC
AAGCTCAGCCTTAAAGCTATGCGCATTCGCTTTGTGCACGACTTTGTCAT
TCCTACCGGCTTGGTAGACAACGTCGATCTCATGGATACGCTTTGGAATT
ATGTCTTGTCCTCCACCTCGGCCATTCAGGAGGTATAA

Coding sequence (CDS) from alignment at tig00000056_pilon:723501..724688+

>Ggra6871.t1 ID=Ggra6871.t1|Name=Ggra6871.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1188bp|location=Sequence derived from alignment at tig00000056_pilon:723501..724688+ (Gracilaria gracilis GNS1m male)
ATGGCGCCGAGCCCGCGCAACATCTACGCCGAAGCGCCGGACAGCTCGCA
GGAGGATGCGGACAACGCCTGTTCGCATGAGAGAGACCCGTCAGATTACT
CGGAGTACACGTACCCGGTGGTGTCCGACTGCCCGCGCCAGTACGCACCG
TGCGACGAGCAGTTTCGCGCCTTTGTGGTCGAGCAGCTGCTGGACGCCGA
CTCCGCGCGCGAGCTGTGCGACGTCCAGCTGCGTACCACCGACGGCCATG
ACGTGCCGGCGTGCCGCGCGCTGCTGGCCGCGCATAGCGCCTACTTTCGT
ACCCTCTTCTACTCCGACTTTGAGGAGGCCGTGCAGAGCCGTGCCGACGT
CAACATGAACAGCCTGCTGCTGCGCCACGTGCTGCTGTTCTGTTACACGG
GCCATTGCGCCTTTGTGGACCACTTGTTGAAGGCCTGCGCTTCCTCTCCT
GCCGAACTGCGCCTGTTTCCGAGCCATGATCAgctgccgctgctggtgcg
gctcagtgccgccgccgAGTACCACGGCCTCACACTGTTGCATCAATGGT
GTGACTGCGCCTTGTACACCATCTGCCAAAAGTTCCACGCCTCCACCTGC
GCCGTCTTACAGGCCATGCGCCAACACGCCGCCAACCATCCGGCCAAACT
CAACCTGCTCCACCTCATCCGAAACAACGCCATGCTCTGCTTCAACGTCC
CGCCCAGCGTGCGTGCCAACAAGTCGTCCAACGCTCAGTATCCGTATTCG
TACGCTTCTTCGCGCTCCTCGCACGCTTCTTCGCGCTCCGCTGCGGACGC
CACCAAGTACGGCGTCATTCAACTGTCGCCCGATGTGTTTGAGCAGGTGC
TTGCCGCCAACCTGCCGCCGGACAGCCAGGAGTACGTCCTTCAGTGCATC
TTCTTTTGGGTCACGCAGGGAACTGCCTTGAGGAGGAACACGCGTAAGCT
GCGTCCGCGCCACGagcaacagacaccgcaacagcaaccgcaacagGATG
TGCTTTACGTGCACCCAGATCGCCTGCAATGGGGAAAGCGCTTTGCTGCC
AAGCTCAGCCTTAAAGCTATGCGCATTCGCTTTGTGCACGACTTTGTCAT
TCCTACCGGCTTGGTAGACAACGTCGATCTCATGGATACGCTTTGGAATT
ATGTCTTGTCCTCCACCTCGGCCATTCAGGAGGTATAA