Ggra6816.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6816.t1
Unique NameGgra6816.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length342
Homology
BLAST of Ggra6816.t1 vs. uniprot
Match: R7QNR0 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QNR0_CHOCR)

HSP 1 Score: 286 bits (731), Expect = 6.450e-93
Identity = 131/194 (67.53%), Postives = 156/194 (80.41%), Query Frame = 0
Query:  148 LRTATFLSAGQTFSGTQTVNTTSSQSKGADEWRVNVVIQGLDLQNGTICGSMEALDVPKAVSPVVTFWEGQIIDNRNHYFWTANWEADVDHDVDHWRKFIAFAPLHQRVKSDRGDDIDLSQLRYVFMRWKEIFFVSPDEECNLTIAGFYYVCMDRVTGAILGFYYDPHSQPYQRLQLNADSTCNGSSFADYQFN 341
            L  A+FL+ GQTFSG+QTVN    Q+K ADEWRVNV IQ +D Q G I GSMEALDVPKA +PVVTFWEG+I+DNRN++FWT  WEA V+ DVDHW++F+ F+ LH RVK DRGDDIDL+  RY+FMRWKE+FFVSP E+C LTIAGFYY+CMDR TG++LG+YYDP SQPYQ L+LNA S   G  F+ Y FN
Sbjct:   54 LPPASFLAPGQTFSGSQTVN--QYQAKPADEWRVNVHIQAVDWQRGRISGSMEALDVPKAAAPVVTFWEGEIVDNRNYFFWTGRWEAHVEQDVDHWKRFVGFSRLHARVKKDRGDDIDLATCRYIFMRWKEVFFVSPGEDCGLTIAGFYYICMDRFTGSMLGYYYDPKSQPYQELRLNAVSLPGGHVFSSYDFN 245          
BLAST of Ggra6816.t1 vs. uniprot
Match: A0A2V3IDX0 (Glucose-induced degradation protein 4-like n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IDX0_9FLOR)

HSP 1 Score: 279 bits (714), Expect = 7.480e-92
Identity = 127/143 (88.81%), Postives = 135/143 (94.41%), Query Frame = 0
Query:  199 MEALDVPKAVSPVVTFWEGQIIDNRNHYFWTANWEADVDHDVDHWRKFIAFAPLHQRVKSDRGDDIDLSQLRYVFMRWKEIFFVSPDEECNLTIAGFYYVCMDRVTGAILGFYYDPHSQPYQRLQLNADSTCNGSSFADYQFN 341
            MEALDVPKAVSPVVTFWEGQIIDNRNH+FWTA W+ADV +DVDHWRKF AF P+HQRVK DRGDDIDLSQ+RYVFMRWKEIFFVSPDEECNLTIAGFYYVCMDR+TGAILGFYYDP+SQPYQRLQLNA ST  GSSFADY+FN
Sbjct:    1 MEALDVPKAVSPVVTFWEGQIIDNRNHFFWTAKWDADVHNDVDHWRKFTAFTPIHQRVKRDRGDDIDLSQMRYVFMRWKEIFFVSPDEECNLTIAGFYYVCMDRLTGAILGFYYDPNSQPYQRLQLNAVSTSTGSSFADYEFN 143          
BLAST of Ggra6816.t1 vs. uniprot
Match: A0A2K1KFH4 (Uncharacterized protein n=6 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1KFH4_PHYPA)

HSP 1 Score: 220 bits (560), Expect = 9.180e-68
Identity = 107/199 (53.77%), Postives = 137/199 (68.84%), Query Frame = 0
Query:  143 PPPRRLRTATFLSAGQTFSGTQTVNTTSSQSKGADEWRVNVVIQGLDLQNGTICGSMEALDVPKAVSPVVTFWEGQIIDNRNHYFWTANWEADVDHDVDHWRKFIAFAPLHQRVKSDRGDDIDLSQLRYVFMRWKEIFFVSPDEECNLTIAGFYYVCMDRVTGAILGFYYDPHSQPYQRLQLNADSTCN-GSSFADYQF 340
            PPP      TFL+ GQ F+GTQ V    S  +  + W+VNV +QG+D+Q+G +CGSMEAL+VP A +PVVTFWEG+I+DNRN+ F+T  W+A  + DV HW KF +F  L + V+ D G  IDL    Y+FMRWKE FFV+   +C LTIAGFYYVC  R  G++ GFYYDP+S PYQ+L+L A +    G SFA YQF
Sbjct:    7 PPP-----CTFLNVGQAFAGTQNV----SNMQKDEAWKVNVRLQGVDMQSGYLCGSMEALNVPAAETPVVTFWEGEIVDNRNYSFYTGQWDATKETDVKHWSKFASFLELREEVQKDGGKSIDLVNHPYIFMRWKEKFFVNVGTDCGLTIAGFYYVCFSRSDGSVNGFYYDPNSSPYQKLELKATNEGRAGHSFATYQF 196          
BLAST of Ggra6816.t1 vs. uniprot
Match: glucose-induced degradation protein 4 homolog n=1 Tax=Amborella trichopoda TaxID=13333 RepID=UPI0005D31346 (glucose-induced degradation protein 4 homolog n=1 Tax=Amborella trichopoda TaxID=13333 RepID=UPI0005D31346)

HSP 1 Score: 220 bits (561), Expect = 1.090e-67
Identity = 103/194 (53.09%), Postives = 140/194 (72.16%), Query Frame = 0
Query:  148 LRTATFLSAGQTFSGTQTVNTTSSQSKGADEWRVNVVIQGLDLQNGTICGSMEALDVPKAVSPVVTFWEGQIIDNRNHYFWTANWEADVDHDVDHWRKFIAFAPLHQRVKSDRGDDIDLSQLRYVFMRWKEIFFVSPDEECNLTIAGFYYVCMDRVTGAILGFYYDPHSQPYQRLQLNADSTC-NGSSFADYQF 340
            L   T LS GQ F+GTQ V++   +    + WRVNV IQG DL +G +CG+MEAL+VP A +PVVTFWEG+I+DN+N+ F+T  W+A  D+DV HW KF +F+PL  +V++D G  +DLS   Y+FMRWKE++FV+  ++C LTIAGFYYVC     G+I GFYYDP+S P+Q+L+L A S   +G SF+ Y+F
Sbjct:   23 LSPCTLLSVGQAFAGTQNVSSIQKE----EAWRVNVRIQGCDLDHGYLCGTMEALNVPLAETPVVTFWEGEIVDNKNYTFFTGKWDAKPDNDVRHWSKFQSFSPLQNQVEADGGKSLDLSNYPYIFMRWKELYFVNVGKDCGLTIAGFYYVCFSCSDGSINGFYYDPNSSPFQKLELKATSEGKSGFSFSSYEF 212          
BLAST of Ggra6816.t1 vs. uniprot
Match: D8QZM2 (Uncharacterized protein FHY1-1 n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8QZM2_SELML)

HSP 1 Score: 218 bits (556), Expect = 3.680e-67
Identity = 107/199 (53.77%), Postives = 135/199 (67.84%), Query Frame = 0
Query:  143 PPPRRLRTATFLSAGQTFSGTQTVNTTSSQSKGADEWRVNVVIQGLDLQNGTICGSMEALDVPKAVSPVVTFWEGQIIDNRNHYFWTANWEADVDHDVDHWRKFIAFAPLHQRVKSDRGDDIDLSQLRYVFMRWKEIFFVSPDEECNLTIAGFYYVCMDRVTGAILGFYYDPHSQPYQRLQLNADSTCN-GSSFADYQF 340
            PPP      +FL  GQ F+G Q V    S S+  + W+VNV +QG D+Q+G +CGSMEAL+VP A +PVVTFWEGQI+DNRN+ F+T  W+A  D DV HW KF +F PL   V+ D G  +DL+    +FMRWKE FFV+   +C LTIAGFYYVC  R  GA+ GFYYDP+S P+Q+L L A +    G+SFA YQF
Sbjct:    7 PPP-----CSFLQVGQAFTGIQNV----SNSQKEEAWKVNVRLQGCDIQHGYLCGSMEALNVPSAETPVVTFWEGQIVDNRNYTFFTGQWDASPDTDVKHWSKFSSFLPLSDTVERDGGRSLDLATYPSIFMRWKEKFFVNVGADCGLTIAGFYYVCFSRNNGAVQGFYYDPNSSPFQKLDLKATNEGRAGASFASYQF 196          
BLAST of Ggra6816.t1 vs. uniprot
Match: A9NNZ9 (Uncharacterized protein n=3 Tax=Pinidae TaxID=3313 RepID=A9NNZ9_PICSI)

HSP 1 Score: 220 bits (560), Expect = 6.490e-67
Identity = 110/199 (55.28%), Postives = 137/199 (68.84%), Query Frame = 0
Query:  143 PPPRRLRTATFLSAGQTFSGTQTVNTTSSQSKGADEWRVNVVIQGLDLQNGTICGSMEALDVPKAVSPVVTFWEGQIIDNRNHYFWTANWEADVDHDVDHWRKFIAFAPLHQRVKSDRGDDIDLSQLRYVFMRWKEIFFVSPDEECNLTIAGFYYVCMDRVTGAILGFYYDPHSQPYQRLQLNADSTCN-GSSFADYQF 340
            PPP  L     LS GQ F+GTQ V    S S+  + W+VNV +QG DL++G +CGSMEAL+VP A +PVVTFWEG+I+DNRN+ F T  WEA  D DV HW KF  FAPL  +V+ D G  +DLS   Y+FMRWKE FFV+   +C LTIAGFYYVC  R  G++ GFYYDP+S P+Q+L+L A +    G SFA Y+F
Sbjct:   68 PPPCML-----LSVGQAFAGTQNV----SNSQKDEAWKVNVRLQGCDLEHGYLCGSMEALNVPSAETPVVTFWEGEIVDNRNYTFLTGKWEAMKDTDVRHWSKFQCFAPLLNQVELDGGRSVDLSNYPYIFMRWKEKFFVNVGTDCGLTIAGFYYVCFSRSDGSVSGFYYDPNSSPFQKLELKATNEGRAGYSFASYEF 257          
BLAST of Ggra6816.t1 vs. uniprot
Match: A0A2R6X3P8 (Uncharacterized protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6X3P8_MARPO)

HSP 1 Score: 218 bits (554), Expect = 7.370e-67
Identity = 106/199 (53.27%), Postives = 139/199 (69.85%), Query Frame = 0
Query:  143 PPPRRLRTATFLSAGQTFSGTQTVNTTSSQSKGADEWRVNVVIQGLDLQNGTICGSMEALDVPKAVSPVVTFWEGQIIDNRNHYFWTANWEADVDHDVDHWRKFIAFAPLHQRVKSDRGDDIDLSQLRYVFMRWKEIFFVSPDEECNLTIAGFYYVCMDRVTGAILGFYYDPHSQPYQRLQLNADSTC-NGSSFADYQF 340
            PPP      TFL+ GQ F+GTQ V    S  +  + W+VNV +QG D+Q G +CGSMEAL+VP A +PVVTFWEG+I+DN+N+ F+T  W+A  D DV+HW KF +FA L + VK D G  +DL+   ++FMRWKE FFV+   +C LTIAGFYYVC  R  G++ GFYYDP+S PYQ+L+L A +   +G SFA Y+F
Sbjct:    7 PPP-----CTFLNVGQAFTGTQNV----SSGQKDEAWKVNVRLQGCDIQKGYLCGSMEALNVPSAETPVVTFWEGEIVDNKNYTFFTGQWDATRDTDVNHWDKFPSFAALKEDVKRDGGRSVDLANYPFMFMRWKEKFFVNVGTDCGLTIAGFYYVCFSRSNGSVNGFYYDPNSSPYQKLELMATNEGRSGYSFATYKF 196          
BLAST of Ggra6816.t1 vs. uniprot
Match: A0A059A1W1 (Uncharacterized protein (Fragment) n=5 Tax=Myrtoideae TaxID=1699513 RepID=A0A059A1W1_EUCGR)

HSP 1 Score: 213 bits (542), Expect = 2.910e-65
Identity = 100/183 (54.64%), Postives = 134/183 (73.22%), Query Frame = 0
Query:  159 TFSGTQTVNTTSSQSKGADEWRVNVVIQGLDLQNGTICGSMEALDVPKAVSPVVTFWEGQIIDNRNHYFWTANWEADVDHDVDHWRKFIAFAPLHQRVKSDRGDDIDLSQLRYVFMRWKEIFFVSPDEECNLTIAGFYYVCMDRVTGAILGFYYDPHSQPYQRLQLNA-DSTCNGSSFADYQF 340
            TFSGTQ  N +S Q++  + WRVNV IQG DL +G +CG+MEAL+VP A +PVVTFWEG+I+D +N+ F+T  WEA  + D+ HW KF +F PL  RV++D G  +DLS  +Y+FMRWKE +FV+  E+C LTIAGFYYVC   + G+I GFYYDP S P+Q+L+L A +   +G SF+ Y+F
Sbjct:    1 TFSGTQ--NVSSLQNEKDEAWRVNVCIQGCDLDHGYLCGTMEALNVPMADTPVVTFWEGEIVDGKNYTFFTGKWEAMPEDDIRHWTKFPSFLPLLSRVEADGGKTLDLSNYQYIFMRWKEQYFVNVGEDCGLTIAGFYYVCFSCIDGSISGFYYDPKSSPFQKLELKATNGERSGYSFSTYEF 181          
BLAST of Ggra6816.t1 vs. uniprot
Match: A0A804K1Z0 ((wild Malaysian banana) hypothetical protein n=5 Tax=Zingiberales TaxID=4618 RepID=A0A804K1Z0_MUSAM)

HSP 1 Score: 214 bits (544), Expect = 4.380e-65
Identity = 110/220 (50.00%), Postives = 146/220 (66.36%), Query Frame = 0
Query:  121 MLVGEPSPASPESLSREHRDHPPPPRRLRTATFLSAGQTFSGTQTVNTTSSQSKGADEWRVNVVIQGLDLQNGTICGSMEALDVPKAVSPVVTFWEGQIIDNRNHYFWTANWEADVDHDVDHWRKFIAFAPLHQRVKSDRGDDIDLSQLRYVFMRWKEIFFVSPDEECNLTIAGFYYVCMDRVTGAILGFYYDPHSQPYQRLQLNA-DSTCNGSSFADYQ 339
            + V E S  S +S        PPPP    + + LSAG+ FSGTQ V   SS  K  + W+VNV IQG+DL NG +CG+MEAL+VP A +PVVTFWEG+++D  N  F+T  WEA  + D+ HW KF +FAPL  +V++D G ++DLS   Y+FMRWKE +FV+   +C LTIAGFYYVC     G+I GFYYDP+S P+Q+L+L      C+G +F+ YQ
Sbjct:    3 VRVVESSTPSQDSGLESRTGRPPPP----SCSLLSAGRAFSGTQNV---SSLQKD-EAWKVNVRIQGIDLDNGYLCGTMEALNVPLADTPVVTFWEGELVDGNNFTFFTRKWEATPEDDIRHWSKFPSFAPLLSQVEADGGKNMDLSNYPYIFMRWKEQYFVNVGIDCGLTIAGFYYVCFSCSDGSINGFYYDPNSSPFQKLELKCIPGGCSGYTFSSYQ 214          
BLAST of Ggra6816.t1 vs. uniprot
Match: V4S4P8 (Uncharacterized protein n=7 Tax=malvids TaxID=91836 RepID=V4S4P8_CITCL)

HSP 1 Score: 213 bits (543), Expect = 5.810e-65
Identity = 104/212 (49.06%), Postives = 143/212 (67.45%), Query Frame = 0
Query:  129 ASPESLSREHRDHPPPPRRLRTATFLSAGQTFSGTQTVNTTSSQSKGADEWRVNVVIQGLDLQNGTICGSMEALDVPKAVSPVVTFWEGQIIDNRNHYFWTANWEADVDHDVDHWRKFIAFAPLHQRVKSDRGDDIDLSQLRYVFMRWKEIFFVSPDEECNLTIAGFYYVCMDRVTGAILGFYYDPHSQPYQRLQLN-ADSTCNGSSFADYQ 339
            ++P  +S  H +   PP      + L+ GQ FSGTQ V+    +    + WRVNV IQG DL++G +CG+MEAL+VP A +PVVTFWEG+I+D +N+ F+T  WEA  + D+ HW KF +FAPL  RV++D G  +DLS   Y+FMRWKE +FV+   +C LTIAGFYYVC     G+I GFYYDP+S P+Q+L+L  A+   +G SF+ Y+
Sbjct:    9 SAPSQVSGAHSEESSPP----ICSLLTVGQAFSGTQNVSNLQKE----EAWRVNVRIQGCDLEHGYLCGTMEALNVPMADTPVVTFWEGEIVDAKNYTFYTGKWEATPEDDIRHWTKFPSFAPLLSRVEADGGKSLDLSNYPYIFMRWKEQYFVNVGTDCGLTIAGFYYVCFSCSDGSINGFYYDPNSSPFQKLELKCANEGRSGFSFSSYE 212          
The following BLAST results are available for this feature:
BLAST of Ggra6816.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
R7QNR06.450e-9367.53Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A2V3IDX07.480e-9288.81Glucose-induced degradation protein 4-like n=1 Tax... [more]
A0A2K1KFH49.180e-6853.77Uncharacterized protein n=6 Tax=Physcomitrium pate... [more]
glucose-induced degradation protein 4 homolog n=1 Tax=Amborella trichopoda TaxID=13333 RepID=UPI0005D313461.090e-6753.09glucose-induced degradation protein 4 homolog n=1 ... [more]
D8QZM23.680e-6753.77Uncharacterized protein FHY1-1 n=2 Tax=Selaginella... [more]
A9NNZ96.490e-6755.28Uncharacterized protein n=3 Tax=Pinidae TaxID=3313... [more]
A0A2R6X3P87.370e-6753.27Uncharacterized protein n=2 Tax=Marchantia polymor... [more]
A0A059A1W12.910e-6554.64Uncharacterized protein (Fragment) n=5 Tax=Myrtoid... [more]
A0A804K1Z04.380e-6550.00(wild Malaysian banana) hypothetical protein n=5 T... [more]
V4S4P85.810e-6549.06Uncharacterized protein n=7 Tax=malvids TaxID=9183... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018618Vacuolar import/degradation protein Vid24PFAMPF09783Vac_ImportDegcoord: 153..325
e-value: 2.0E-44
score: 151.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 80..149
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..48
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 132..146
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 107..124
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 80..99
NoneNo IPR availablePANTHERPTHR14534VACUOLAR IMPORT AND DEGRADATION PROTEIN 24coord: 137..340
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..28
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 16..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..15
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 29..341
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 24..28

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:603863..604888 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6816.t1Ggra6816.t1Gracilaria gracilis GNS1m malemRNAtig00000056_pilon 603863..604888 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6816.t1 ID=Ggra6816.t1|Name=Ggra6816.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=342bp
MRQRNAQLRHSAHSRAASTPVLAPSVRARLAAPRSRAQPPRPLRPPIPPS
ACASSASACLLLFCAFSPVATPLRAPTSPPSLPLPSPHPGAPYLLPGASP
PFARPQADTTPSTPPRPIPSMLVGEPSPASPESLSREHRDHPPPPRRLRT
ATFLSAGQTFSGTQTVNTTSSQSKGADEWRVNVVIQGLDLQNGTICGSME
ALDVPKAVSPVVTFWEGQIIDNRNHYFWTANWEADVDHDVDHWRKFIAFA
PLHQRVKSDRGDDIDLSQLRYVFMRWKEIFFVSPDEECNLTIAGFYYVCM
DRVTGAILGFYYDPHSQPYQRLQLNADSTCNGSSFADYQFN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR018618Vacuolar_import/degrad_Vid24