Ggra6816.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6816.t1
Unique NameGgra6816.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length342
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:603863..604888 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3218.PP1S177_117V6.1
PFAMsVac_ImportDeg
Max annot lvl35493|Streptophyta
Evalue4.5e-68
EggNOG OGsCOG5073@1|root,KOG4635@2759|Eukaryota,37M7Y@33090|Viridiplantae,3GCN0@35493|Streptophyta
DescriptionGlucose-induced degradation protein 4 homolog
COG categoryU
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6816Ggra6816Gracilaria gracilis GNS1m malegenetig00000056_pilon 603863..604888 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6816.t1.stop1Ggra6816.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 603863..603865 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6816.t1.CDS1Ggra6816.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 603863..604888 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6816.t1.exon1Ggra6816.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 603863..604888 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6816.t1.start1Ggra6816.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 604886..604888 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6816.t1Ggra6816.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 603863..604888 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6816.t1 ID=Ggra6816.t1|Name=Ggra6816.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=342bp
MRQRNAQLRHSAHSRAASTPVLAPSVRARLAAPRSRAQPPRPLRPPIPPS
ACASSASACLLLFCAFSPVATPLRAPTSPPSLPLPSPHPGAPYLLPGASP
PFARPQADTTPSTPPRPIPSMLVGEPSPASPESLSREHRDHPPPPRRLRT
ATFLSAGQTFSGTQTVNTTSSQSKGADEWRVNVVIQGLDLQNGTICGSME
ALDVPKAVSPVVTFWEGQIIDNRNHYFWTANWEADVDHDVDHWRKFIAFA
PLHQRVKSDRGDDIDLSQLRYVFMRWKEIFFVSPDEECNLTIAGFYYVCM
DRVTGAILGFYYDPHSQPYQRLQLNADSTCNGSSFADYQFN*
back to top

spliced messenger RNA

>Ggra6816.t1 ID=Ggra6816.t1|Name=Ggra6816.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1026bp|location=Sequence derived from alignment at tig00000056_pilon:603863..604888- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCCAACGCAATGCGCAACTGCGCCACAGCGCGCACTCACGCGCCGC
AAGCACACCGGTGCTCGCGCCCAGCGTGCGCGCGCGTCTGGCCGCCCCAC
GCTCTCGCGCACAACCGCCGCGTCCGCTCCGGCCTCCAATTCCTCCGTCT
GCCTGCGCATCTTCCGCCTCCGCCTGTCTCCTCCTCTTCTGCGCCTTCTC
CCCCGTCGCCACCCCCCTCCGAGCCCCCACTTCCCCTCCATCCCTCCCAC
TACCATCCCCTCATCCTGGAGCGCCCTACCTCCTTCCCGGCGCGTCGCCG
CCGTTTGCTCGACCCCAAGCTGACACCACCCCTTCCACCCCCCCTCGACC
CATCCCCTCCATGTTGGTTGGCGAGCCTTCGCCCGCCTCCCCAGAATCGC
TCTCTCGTGAGCACCGCGACCATCCTCCCCCCCCTCGTCGCCTCCGCACC
GCCACTTTCCTTTCTGCCGGCCAGACCTTCTCCGGCACGCAGACCGTCAA
CACTACCTCCTCGCAGTCAAAGGGCGCCGACGAGTGGCGCGTAAATGTCG
TTATCCAGGGCCTCGACCTACAAAACGGAACTATCTGCGGTTCCATGGAA
GCTTTGGACGTCCCCAAGGCCGTCTCGCCCGTCGTCACCTTCTGGGAAGG
CCAGATAATCGACAACCGCAACCACTACTTCTGGACCGCCAACTGGGAGG
CCGATGTCGACCATGACGTCGATCACTGGCGTAAGTTCATCGCCTTCGCC
CCGTTACACCAACGCGTAAAGAGTGATCGCGGCGACGACATCGACTTGTC
TCAACTGCGCTACGTGTTCATGCGCTGGAAGGAGATATTCTTTGTCAGTC
CAGACGAGGAATGCAACCTCACAATTGCCGGCTTCTACTATGTGTGTATG
GACAGAGTCACGGGCGCCATTCTGGGTTTCTACTACGATCCACACAGCCA
ACCATACCAACGCTTACAACTAAACGCCGACTCTACATGCAACGGCTCTT
CGTTCGCCGACTATCAATTCAACTGA
back to top

protein sequence of Ggra6816.t1

>Ggra6816.t1 ID=Ggra6816.t1|Name=Ggra6816.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=342bp
MRQRNAQLRHSAHSRAASTPVLAPSVRARLAAPRSRAQPPRPLRPPIPPS
ACASSASACLLLFCAFSPVATPLRAPTSPPSLPLPSPHPGAPYLLPGASP
PFARPQADTTPSTPPRPIPSMLVGEPSPASPESLSREHRDHPPPPRRLRT
ATFLSAGQTFSGTQTVNTTSSQSKGADEWRVNVVIQGLDLQNGTICGSME
ALDVPKAVSPVVTFWEGQIIDNRNHYFWTANWEADVDHDVDHWRKFIAFA
PLHQRVKSDRGDDIDLSQLRYVFMRWKEIFFVSPDEECNLTIAGFYYVCM
DRVTGAILGFYYDPHSQPYQRLQLNADSTCNGSSFADYQFN*
back to top

mRNA from alignment at tig00000056_pilon:603863..604888-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6816.t1 ID=Ggra6816.t1|Name=Ggra6816.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1026bp|location=Sequence derived from alignment at tig00000056_pilon:603863..604888- (Gracilaria gracilis GNS1m male)
ATGCGCCAACGCAATGCGCAACTGCGCCACAGCGCGCACTCACGCGCCGC
AAGCACACCGGTGCTCGCGCCCAGCGTGCGCGCGCGTCTGGCCGCCCCAC
GCTCTCGCGCACAACCGCCGCGTCCGCTCCGGCCTCCAATTCCTCCGTCT
GCCTGCGCATCTTCCGCCTCCGCCTGTCTCCTCCTCTTCTGCGCCTTCTC
CCCCGTCGCCACCCCCCTCCGAGCCCCCACTTCCCCTCCATCCCTCCCAC
TACCATCCCCTCATCCTGGAGCGCCCTACCTCCTTCCCGGCGCGTCGCCG
CCGTTTGCTCGACCCCAAGCTGACACCACCCCTTCCACCCCCCCTCGACC
CATCCCCTCCATGTTGGTTGGCGAGCCTTCGCCCGCCTCCCCAGAATCGC
TCTCTCGTGAGCACCGCGACCATCCTCCCCCCCCTCGTCGCCTCCGCACC
GCCACTTTCCTTTCTGCCGGCCAGACCTTCTCCGGCACGCAGACCGTCAA
CACTACCTCCTCGCAGTCAAAGGGCGCCGACGAGTGGCGCGTAAATGTCG
TTATCCAGGGCCTCGACCTACAAAACGGAACTATCTGCGGTTCCATGGAA
GCTTTGGACGTCCCCAAGGCCGTCTCGCCCGTCGTCACCTTCTGGGAAGG
CCAGATAATCGACAACCGCAACCACTACTTCTGGACCGCCAACTGGGAGG
CCGATGTCGACCATGACGTCGATCACTGGCGTAAGTTCATCGCCTTCGCC
CCGTTACACCAACGCGTAAAGAGTGATCGCGGCGACGACATCGACTTGTC
TCAACTGCGCTACGTGTTCATGCGCTGGAAGGAGATATTCTTTGTCAGTC
CAGACGAGGAATGCAACCTCACAATTGCCGGCTTCTACTATGTGTGTATG
GACAGAGTCACGGGCGCCATTCTGGGTTTCTACTACGATCCACACAGCCA
ACCATACCAACGCTTACAACTAAACGCCGACTCTACATGCAACGGCTCTT
CGTTCGCCGACTATCAATTCAACTGA
back to top

Coding sequence (CDS) from alignment at tig00000056_pilon:603863..604888-

>Ggra6816.t1 ID=Ggra6816.t1|Name=Ggra6816.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1026bp|location=Sequence derived from alignment at tig00000056_pilon:603863..604888- (Gracilaria gracilis GNS1m male)
ATGCGCCAACGCAATGCGCAACTGCGCCACAGCGCGCACTCACGCGCCGC
AAGCACACCGGTGCTCGCGCCCAGCGTGCGCGCGCGTCTGGCCGCCCCAC
GCTCTCGCGCACAACCGCCGCGTCCGCTCCGGCCTCCAATTCCTCCGTCT
GCCTGCGCATCTTCCGCCTCCGCCTGTCTCCTCCTCTTCTGCGCCTTCTC
CCCCGTCGCCACCCCCCTCCGAGCCCCCACTTCCCCTCCATCCCTCCCAC
TACCATCCCCTCATCCTGGAGCGCCCTACCTCCTTCCCGGCGCGTCGCCG
CCGTTTGCTCGACCCCAAGCTGACACCACCCCTTCCACCCCCCCTCGACC
CATCCCCTCCATGTTGGTTGGCGAGCCTTCGCCCGCCTCCCCAGAATCGC
TCTCTCGTGAGCACCGCGACCATCCTCCCCCCCCTCGTCGCCTCCGCACC
GCCACTTTCCTTTCTGCCGGCCAGACCTTCTCCGGCACGCAGACCGTCAA
CACTACCTCCTCGCAGTCAAAGGGCGCCGACGAGTGGCGCGTAAATGTCG
TTATCCAGGGCCTCGACCTACAAAACGGAACTATCTGCGGTTCCATGGAA
GCTTTGGACGTCCCCAAGGCCGTCTCGCCCGTCGTCACCTTCTGGGAAGG
CCAGATAATCGACAACCGCAACCACTACTTCTGGACCGCCAACTGGGAGG
CCGATGTCGACCATGACGTCGATCACTGGCGTAAGTTCATCGCCTTCGCC
CCGTTACACCAACGCGTAAAGAGTGATCGCGGCGACGACATCGACTTGTC
TCAACTGCGCTACGTGTTCATGCGCTGGAAGGAGATATTCTTTGTCAGTC
CAGACGAGGAATGCAACCTCACAATTGCCGGCTTCTACTATGTGTGTATG
GACAGAGTCACGGGCGCCATTCTGGGTTTCTACTACGATCCACACAGCCA
ACCATACCAACGCTTACAACTAAACGCCGACTCTACATGCAACGGCTCTT
CGTTCGCCGACTATCAATTCAACTGA
back to top