Ggra6768.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6768.t1
Unique NameGgra6768.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length521
Homology
BLAST of Ggra6768.t1 vs. uniprot
Match: A0A2V3IX43 (Small nuclear ribonucleoprotein Sm D-like protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IX43_9FLOR)

HSP 1 Score: 137 bits (345), Expect = 2.290e-34
Identity = 71/138 (51.45%), Postives = 95/138 (68.84%), Query Frame = 0
Query:  380 AQPVDNVAACVHLEHAPYRILKPNPITVNLSTQSKKRPRAGSQRAANSERRVSVLQAIHQKAAKGPLELLGRAVANKFLVRIRLRERHRIRGFVEGVVVAFDRHMNIVVRNAVIQDYGLDARQAGQLLIRGENIVLIT 517
            A+P++NVAAC HL+HAPYR+L P P+T   +   +  PR  S+ +A       VL AIH KA +GPL+LL RA  +   VR+ +RERHRIRGFVEGVV AFD+H N+V+ NAV++D+    R   QL IRGEN+V ++
Sbjct:   41 AKPLNNVAACAHLQHAPYRLLTPRPVT---AAPKQPTPRKRSRSSAGK----GVLDAIHSKAGEGPLQLLKRAADHALNVRVCIRERHRIRGFVEGVVDAFDKHFNLVLSNAVVKDHDCKPRSVNQLFIRGENVVHVS 171          
BLAST of Ggra6768.t1 vs. uniprot
Match: A0A5J4YU44 (Small nuclear ribonucleoprotein Sm D-like protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YU44_PORPP)

HSP 1 Score: 64.7 bits (156), Expect = 2.630e-8
Identity = 44/149 (29.53%), Postives = 68/149 (45.64%), Query Frame = 0
Query:  383 VDNVAACVHLEHAPYRILKPNPITVNLSTQSKKRPRAGSQRAANSERRVSVLQAIHQKAAKGPLELLGRAVANKFL--------------VRIRLRERHRIRGFVEGVVVAFDRHMNIVVRNAVIQDYGLD-ARQAGQLLIRGENIVLI 516
            +DNVA C  ++  PYR+L   P   + + +      A    A   E         H  A +  +E LG  V  KF               V + +R  H +RG++ G +VAFD+H N+V++ AV        +R  G +L+RGE++V I
Sbjct:   49 LDNVAMCASVQQKPYRLLVRAPKPPSATAEEPSAASASGYAATTPETHR------HDAAKRSTIEHLGAKVTAKFPPHQLLSVSVETQEPVEVLVRHTHALRGYIHGRLVAFDKHFNLVIQQAVETSMNRQQSRLLGHVLLRGEHVVRI 191          
BLAST of Ggra6768.t1 vs. uniprot
Match: SMDL (Small nuclear ribonucleoprotein Sm D-like protein n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=SMDL_DICDI)

HSP 1 Score: 59.7 bits (143), Expect = 2.650e-6
Identity = 34/101 (33.66%), Postives = 56/101 (55.45%), Query Frame = 0
Query:  433 VLQAIHQKAAKGPLELLGRAVANKFLVRIRLRERHRIRGFVEGVVVAFDRHMNIVVRNAVIQDYGL-----------------DARQAGQLLIRGENIVLI 516
            +L+ I  K   GPL LL RA+ +K  +++ +R  + IRG+  G ++AFD+HMNI++R+ V ++Y L                   R  GQL I+G+ +V +
Sbjct:  154 ILKNISNKFTDGPLSLLKRALESKSKIKVMIRGTNCIRGYCRGYIIAFDKHMNIILRD-VEEEYDLLKSLPSTRNQNQPIQPKIKRYYGQLFIKGDTVVSV 253          
The following BLAST results are available for this feature:
BLAST of Ggra6768.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IX432.290e-3451.45Small nuclear ribonucleoprotein Sm D-like protein ... [more]
A0A5J4YU442.630e-829.53Small nuclear ribonucleoprotein Sm D-like protein ... [more]
SMDL2.650e-633.66Small nuclear ribonucleoprotein Sm D-like protein ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002110Ankyrin repeatPRINTSPR01415ANKYRINcoord: 36..51
score: 45.52
coord: 117..131
score: 43.66
IPR002110Ankyrin repeatSMARTSM00248ANK_2acoord: 204..233
e-value: 3.6E-4
score: 29.9
coord: 101..130
e-value: 2.8E-4
score: 30.2
coord: 170..199
e-value: 4.8E-4
score: 29.4
coord: 238..267
e-value: 0.22
score: 20.6
coord: 2..31
e-value: 1200.0
score: 4.4
coord: 68..97
e-value: 9.7E-6
score: 35.1
coord: 271..300
e-value: 0.028
score: 23.6
coord: 35..64
e-value: 2.3E-4
score: 30.5
IPR002110Ankyrin repeatPFAMPF13637Ank_4coord: 249..291
e-value: 5.8E-5
score: 23.6
IPR002110Ankyrin repeatPFAMPF12796Ank_2coord: 163..235
e-value: 3.0E-11
score: 43.7
coord: 10..98
e-value: 2.3E-17
score: 63.3
IPR002110Ankyrin repeatPFAMPF00023Ankcoord: 102..131
e-value: 1.9E-5
score: 24.9
IPR002110Ankyrin repeatPROSITEPS50088ANK_REPEATcoord: 238..270
score: 9.91158
IPR002110Ankyrin repeatPROSITEPS50088ANK_REPEATcoord: 204..236
score: 13.73111
IPR002110Ankyrin repeatPROSITEPS50088ANK_REPEATcoord: 170..202
score: 11.78128
IPR002110Ankyrin repeatPROSITEPS50088ANK_REPEATcoord: 35..67
score: 14.82622
IPR002110Ankyrin repeatPROSITEPS50088ANK_REPEATcoord: 271..303
score: 10.55262
IPR002110Ankyrin repeatPROSITEPS50088ANK_REPEATcoord: 101..133
score: 13.11678
IPR002110Ankyrin repeatPROSITEPS50088ANK_REPEATcoord: 68..100
score: 14.47899
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 447..518
e-value: 5.4E-6
score: 35.9
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 473..517
e-value: 3.5E-9
score: 36.2
IPR036770Ankyrin repeat-containing domain superfamilyGENE3D1.25.40.20coord: 202..326
e-value: 2.9E-30
score: 106.9
IPR036770Ankyrin repeat-containing domain superfamilyGENE3D1.25.40.20coord: 150..201
e-value: 1.9E-9
score: 39.5
IPR036770Ankyrin repeat-containing domain superfamilyGENE3D1.25.40.20coord: 6..69
e-value: 7.6E-20
score: 73.1
IPR036770Ankyrin repeat-containing domain superfamilyGENE3D1.25.40.20coord: 70..149
e-value: 5.0E-23
score: 83.1
IPR036770Ankyrin repeat-containing domain superfamilySUPERFAMILY48403Ankyrin repeatcoord: 7..311
NoneNo IPR availableGENE3D2.30.30.100coord: 419..519
e-value: 1.9E-15
score: 58.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 302..386
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 329..365
NoneNo IPR availablePANTHERPTHR24193:SF119ADA2A-CONTAINING COMPLEX COMPONENT 3, ISOFORM Dcoord: 205..311
NoneNo IPR availablePANTHERPTHR24193:SF119ADA2A-CONTAINING COMPLEX COMPONENT 3, ISOFORM Dcoord: 155..235
coord: 6..133
NoneNo IPR availablePANTHERPTHR24193ANKYRIN REPEAT PROTEINcoord: 155..235
coord: 205..311
NoneNo IPR availablePANTHERPTHR24193ANKYRIN REPEAT PROTEINcoord: 74..196
NoneNo IPR availablePANTHERPTHR24193:SF119ADA2A-CONTAINING COMPLEX COMPONENT 3, ISOFORM Dcoord: 74..196
NoneNo IPR availablePANTHERPTHR24193ANKYRIN REPEAT PROTEINcoord: 6..133
NoneNo IPR availablePROSITEPS50297ANK_REP_REGIONcoord: 68..99
score: 13.097776
NoneNo IPR availablePROSITEPS50297ANK_REP_REGIONcoord: 101..131
score: 12.009989
NoneNo IPR availablePROSITEPS50297ANK_REP_REGIONcoord: 170..198
score: 10.922203
NoneNo IPR availablePROSITEPS50297ANK_REP_REGIONcoord: 35..67
score: 13.442684
NoneNo IPR availablePROSITEPS50297ANK_REP_REGIONcoord: 238..266
score: 8.613973
NoneNo IPR availablePROSITEPS50297ANK_REP_REGIONcoord: 271..297
score: 9.648697
NoneNo IPR availablePROSITEPS50297ANK_REP_REGIONcoord: 204..236
score: 12.354897
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 444..518

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:460626..463216 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6768.t1Ggra6768.t1Gracilaria gracilis GNS1m malemRNAtig00000056_pilon 460626..463216 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6768.t1 ID=Ggra6768.t1|Name=Ggra6768.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=521bp
MCFAQQLRSAASRANLTFVIELLACGADVNATDPLGQTALHLAAENGHQQ
VVAALLAAGAHVNAKDKDGQTAFHHAVENGHQQVVAALLERGADIQAVDS
LGRTALHVAAYHGHKCVVETLLLHGADVHAKAQIGWMAAYDESDADNDEL
QDQVEGVLNHTAGVNATSPYGVTALHLAAAEGHRDVVDMLLWHDANLHCR
ADFAGITALHVAAASGYEQVVVALLARGADLHARDDLNRFNAFHFTTHEG
HERVVAVLLERGANVHSKHQFGDTALHLAAAKRHERVADMLWSAGADPFA
DNHKGESPLQLLPRTSPLADRMRHKRPSPPPSVAQPSPPPSVTHLSPPPS
VTHLSSPPSVTHLSPPPTAAPQQQEGHPPAQPVDNVAACVHLEHAPYRIL
KPNPITVNLSTQSKKRPRAGSQRAANSERRVSVLQAIHQKAAKGPLELLG
RAVANKFLVRIRLRERHRIRGFVEGVVVAFDRHMNIVVRNAVIQDYGLDA
RQAGQLLIRGENIVLITIAT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002110Ankyrin_rpt
IPR001163LSM_dom_euk/arc
IPR036770Ankyrin_rpt-contain_sf
IPR010920LSM_dom_sf