Ggra6768.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6768.t1
Unique NameGgra6768.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length521
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:460626..463216 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog44689.DDB0233195
PFAMsLSM
Max annot lvl554915|Amoebozoa
GOsGO:0000375,GO:0000377,GO:0000398,GO:0000932,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005688,GO:0005737,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0032991,GO:0033962,GO:0034622,GO:0034641,GO:0035770,GO:0036464,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046540,GO:0065003,GO:0070925,GO:0071011,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0097525,GO:0097526,GO:0120114,GO:1901360,GO:1901363,GO:1902494,GO:1990726,GO:1990904
Evalue1.95e-06
EggNOG OGs2CMUN@1|root,2QS1B@2759|Eukaryota,3XH37@554915|Amoebozoa
DescriptionsnRNP Sm proteins
COG categoryA
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6768Ggra6768Gracilaria gracilis GNS1m malegenetig00000056_pilon 460626..463216 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6768.t1Ggra6768.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 460626..463216 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6768.t1.start1Ggra6768.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 460626..460628 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6768.t1.CDS1Ggra6768.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 460626..461761 +
Ggra6768.t1.CDS2Ggra6768.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000056_pilon 462790..463216 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6768.t1.exon1Ggra6768.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 460626..461761 +
Ggra6768.t1.exon2Ggra6768.t1.exon2Gracilaria gracilis GNS1m maleexontig00000056_pilon 462790..463216 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6768.t1.intron1Ggra6768.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000056_pilon 461762..462789 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6768.t1.stop1Ggra6768.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 463214..463216 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6768.t1 ID=Ggra6768.t1|Name=Ggra6768.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=521bp
MCFAQQLRSAASRANLTFVIELLACGADVNATDPLGQTALHLAAENGHQQ
VVAALLAAGAHVNAKDKDGQTAFHHAVENGHQQVVAALLERGADIQAVDS
LGRTALHVAAYHGHKCVVETLLLHGADVHAKAQIGWMAAYDESDADNDEL
QDQVEGVLNHTAGVNATSPYGVTALHLAAAEGHRDVVDMLLWHDANLHCR
ADFAGITALHVAAASGYEQVVVALLARGADLHARDDLNRFNAFHFTTHEG
HERVVAVLLERGANVHSKHQFGDTALHLAAAKRHERVADMLWSAGADPFA
DNHKGESPLQLLPRTSPLADRMRHKRPSPPPSVAQPSPPPSVTHLSPPPS
VTHLSSPPSVTHLSPPPTAAPQQQEGHPPAQPVDNVAACVHLEHAPYRIL
KPNPITVNLSTQSKKRPRAGSQRAANSERRVSVLQAIHQKAAKGPLELLG
RAVANKFLVRIRLRERHRIRGFVEGVVVAFDRHMNIVVRNAVIQDYGLDA
RQAGQLLIRGENIVLITIAT*
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spliced messenger RNA

>Ggra6768.t1 ID=Ggra6768.t1|Name=Ggra6768.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1563bp|location=Sequence derived from alignment at tig00000056_pilon:460626..463216+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCTTCGCACAGCAGTTGCGCTCAGCTGCCAGTCGAGCCAATCTCAC
CTTCGTCATCGAGCTGCTTGCGTGCGGCGCTGACGTGAACGCCACCGACC
CACTTGGCCAAACTGCTTTGCACCTCGCTGCCGAAAACGGCCACCAGCAA
GTCGTGGCCGCGCTGCTGGCCGCCGGCGCTCATGTCAACGCCAAAGACAA
AGATGGCCAAACTGCTTTCCACCACGCCGTCGAAAACGGCCACCAGCAAG
TGGTGGCCGCGCTGTTGGAGCGCGGCGCTGATATCCAAGCCGTCGACAGC
CTGGGAAGGACCGCTTTGCACGTCGCCGCTTACCATGGGCACAAGTGCGT
TGTGGAGACGCTGCTGTTGCACGGCGCGGACGTACACGCCAAAGCGCAGA
TAGGCTGGATGGCTGCGTACGACGAAAGCGACGCCGACAACGACGAATTA
CAAGATCAAGTAGAGGGGGTCCTGAACCACACTGCTGGCGTGAACGCCAC
CAGCCCATATGGCGTCACTGCTTTGCATCTTGCCGCTGCGGAAGGGCACC
GAGACGTGGTGGACATGCTGCTGTGGCACGACGCCAACTTGCACTGCAGA
GCCGACTTTGCTGGAATCACCGCTCTGCACGTAGCCGCTGCGAGCGGATA
CGAGCAAGTGGTGGTGGCGCTGTTGGCGCGCGGCGCCGACTTGCACGCCA
GGGATGACTTGAACCGCTTCAACGCTTTCCACTTTACCACTCACGAAGGA
CACGAGCGCGTGGTGGCGGTGCTGCTAGAGCGCGGCGCCAACGTGCACAG
CAAGCATCAATTTGGCGACACCGCTTTGCACTTGGCCGCGGCTAAGCGAC
ACGAGCGCGTAGCGGACATGTTGTGGAGCGCCGGTGCGGACCCATTCGCG
GACAACCACAAAGGCGAGTCGCCATTGCAGCTGCTGCCGCGCACGAGCCC
ACTCGCGGACAGGATGCGTCATAAACGACCATCACCGCCACCGTCGGTCG
CCCAACCATCACCGCCACCATCCGTTACCCATCTCTCACCGCCACCATCC
GTTACCCATCTCTCGTCGCCACCATCCGTTACCCATCTCTCACCGCCACC
AACAGCCGCCCCACAGCAGCAAGAGGGGCACCCGCCAGCCCAGCCAGTTG
ATAATGTGGCCGCCTGCGTGCACTTGGAACACGCCCCGTACCGAATCCTC
AAGCCGAACCCAATCACCGTCAATCTAAGCACTCAGTCAAAGAAACGTCC
GCGAGCAGGATCTCAGCGTGCTGCGAACAGTGAACGTCGCGTAAGCGTGC
TACAGGCAATCCACCAGAAGGCGGCAAAGGGTCCGCTTGAACTTCTTGGC
CGCGCTGTGGCTAACAAATTCCTTGTGCGCATTCGACTTCGGGAGCGTCA
TCGAATCAGAGGATTTGTGGAAGGCGTTGTGGTGGCTTTTGACCGACATA
TGAACATTGTCGTCAGGAATGCTGTGATTCAAGACTATGGACTTGATGCT
CGACAAGCAGGCCAGCTTCTAATTAGAGGGGAAAACATTGTACTCATCAC
TATTGCAACGTAA
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protein sequence of Ggra6768.t1

>Ggra6768.t1 ID=Ggra6768.t1|Name=Ggra6768.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=521bp
MCFAQQLRSAASRANLTFVIELLACGADVNATDPLGQTALHLAAENGHQQ
VVAALLAAGAHVNAKDKDGQTAFHHAVENGHQQVVAALLERGADIQAVDS
LGRTALHVAAYHGHKCVVETLLLHGADVHAKAQIGWMAAYDESDADNDEL
QDQVEGVLNHTAGVNATSPYGVTALHLAAAEGHRDVVDMLLWHDANLHCR
ADFAGITALHVAAASGYEQVVVALLARGADLHARDDLNRFNAFHFTTHEG
HERVVAVLLERGANVHSKHQFGDTALHLAAAKRHERVADMLWSAGADPFA
DNHKGESPLQLLPRTSPLADRMRHKRPSPPPSVAQPSPPPSVTHLSPPPS
VTHLSSPPSVTHLSPPPTAAPQQQEGHPPAQPVDNVAACVHLEHAPYRIL
KPNPITVNLSTQSKKRPRAGSQRAANSERRVSVLQAIHQKAAKGPLELLG
RAVANKFLVRIRLRERHRIRGFVEGVVVAFDRHMNIVVRNAVIQDYGLDA
RQAGQLLIRGENIVLITIAT*
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mRNA from alignment at tig00000056_pilon:460626..463216+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6768.t1 ID=Ggra6768.t1|Name=Ggra6768.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2591bp|location=Sequence derived from alignment at tig00000056_pilon:460626..463216+ (Gracilaria gracilis GNS1m male)
ATGTGCTTCGCACAGCAGTTGCGCTCAGCTGCCAGTCGAGCCAATCTCAC
CTTCGTCATCGAGCTGCTTGCGTGCGGCGCTGACGTGAACGCCACCGACC
CACTTGGCCAAACTGCTTTGCACCTCGCTGCCGAAAACGGCCACCAGCAA
GTCGTGGCCGCGCTGCTGGCCGCCGGCGCTCATGTCAACGCCAAAGACAA
AGATGGCCAAACTGCTTTCCACCACGCCGTCGAAAACGGCCACCAGCAAG
TGGTGGCCGCGCTGTTGGAGCGCGGCGCTGATATCCAAGCCGTCGACAGC
CTGGGAAGGACCGCTTTGCACGTCGCCGCTTACCATGGGCACAAGTGCGT
TGTGGAGACGCTGCTGTTGCACGGCGCGGACGTACACGCCAAAGCGCAGA
TAGGCTGGATGGCTGCGTACGACGAAAGCGACGCCGACAACGACGAATTA
CAAGATCAAGTAGAGGGGGTCCTGAACCACACTGCTGGCGTGAACGCCAC
CAGCCCATATGGCGTCACTGCTTTGCATCTTGCCGCTGCGGAAGGGCACC
GAGACGTGGTGGACATGCTGCTGTGGCACGACGCCAACTTGCACTGCAGA
GCCGACTTTGCTGGAATCACCGCTCTGCACGTAGCCGCTGCGAGCGGATA
CGAGCAAGTGGTGGTGGCGCTGTTGGCGCGCGGCGCCGACTTGCACGCCA
GGGATGACTTGAACCGCTTCAACGCTTTCCACTTTACCACTCACGAAGGA
CACGAGCGCGTGGTGGCGGTGCTGCTAGAGCGCGGCGCCAACGTGCACAG
CAAGCATCAATTTGGCGACACCGCTTTGCACTTGGCCGCGGCTAAGCGAC
ACGAGCGCGTAGCGGACATGTTGTGGAGCGCCGGTGCGGACCCATTCGCG
GACAACCACAAAGGCGAGTCGCCATTGCAGCTGCTGCCGCGCACGAGCCC
ACTCGCGGACAGGATGCGTCATAAACGACCATCACCGCCACCGTCGGTCG
CCCAACCATCACCGCCACCATCCGTTACCCATCTCTCACCGCCACCATCC
GTTACCCATCTCTCGTCGCCACCATCCGTTACCCATCTCTCACCGCCACC
AACAGCCGCCCCACAGCAGCAAGAGGGGCACCCGCCGTACCGcatcttcc
tcagccatgccggtgaagacaagcagaccatcgcgcagccgctgtacaac
ggcctgcggcaacgcggtttcacagtgttcttcgaggtgcagtcgtttcg
cctcgacgacgacagcccacacgtgatgaactatgtcatgaacaccgcgc
ccgttggcgtgttcatcatgagtcccgaattcatcgccaaaaagtggtgc
atgcgcgagctcatcacgttcgtgcgccgccacgacaccgccgtggctgc
caagaacacgccgccgttgatcatctcggtgatgtaccgattgtccacgc
gcgagtgtcacaacccggttacggtcgccagggcgcacgaactgttcacc
tgtatcagcgtgcgtttgatggctcggtgccgcttcacaaggtttcgcac
gcgctgcacaaggccgctacgttgtggagcatcgagaacgactttggcgc
gtcgaacctcgaccgcccggacatgcagtccacgcgaaaagcgttcatcg
aAAGCGTGCTGCAGCGCATTGTGCAACGCATTGAGCGGGAGCGGTAGCGC
GCGGGAGATGTAGCAAATTGGCGCCAGCTCCACAACCCGTGCTCTTGGAG
CGGGTCTCGTGGTGCTCGGCGACACACTGCCGTTCAGTTGTAACAGATTT
TGTCAGGTTTTTCGTACCCTTGTGCTCTATTGTATCTAACAAGGGTATGA
AGGTACACTATGTGCTGTACAGGTAGAGTCAAGAATCTATTGTAGACGTG
ACAACGATAACAACCCCTCCACTGGAGACATCGACGAGCAGAACTGCAGA
AGTCATGAAACGAATAACTTTACCCACCTTCGTGCATGGCTTTCGGAATG
GCCGGTGAGGAAGCCAACGAATCGCCCAGCCCTTCTTCTGCAGCCACAGC
TGCCCGCTTAAACCCCTTTTCGGATCAATTCGACCCAGAATTTGTCCTGC
GACAACCGCTTTCAGCCTTTCGCGACGCATTGCCCACAGCGCGAGATCGA
GCTATATTCGACAGAGCCCAGCCAGTTGATAATGTGGCCGCCTGCGTGCA
CTTGGAACACGCCCCGTACCGAATCCTCAAGCCGAACCCAATCACCGTCA
ATCTAAGCACTCAGTCAAAGAAACGTCCGCGAGCAGGATCTCAGCGTGCT
GCGAACAGTGAACGTCGCGTAAGCGTGCTACAGGCAATCCACCAGAAGGC
GGCAAAGGGTCCGCTTGAACTTCTTGGCCGCGCTGTGGCTAACAAATTCC
TTGTGCGCATTCGACTTCGGGAGCGTCATCGAATCAGAGGATTTGTGGAA
GGCGTTGTGGTGGCTTTTGACCGACATATGAACATTGTCGTCAGGAATGC
TGTGATTCAAGACTATGGACTTGATGCTCGACAAGCAGGCCAGCTTCTAA
TTAGAGGGGAAAACATTGTACTCATCACTATTGCAACGTAA
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Coding sequence (CDS) from alignment at tig00000056_pilon:460626..463216+

>Ggra6768.t1 ID=Ggra6768.t1|Name=Ggra6768.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1563bp|location=Sequence derived from alignment at tig00000056_pilon:460626..463216+ (Gracilaria gracilis GNS1m male)
ATGTGCTTCGCACAGCAGTTGCGCTCAGCTGCCAGTCGAGCCAATCTCAC
CTTCGTCATCGAGCTGCTTGCGTGCGGCGCTGACGTGAACGCCACCGACC
CACTTGGCCAAACTGCTTTGCACCTCGCTGCCGAAAACGGCCACCAGCAA
GTCGTGGCCGCGCTGCTGGCCGCCGGCGCTCATGTCAACGCCAAAGACAA
AGATGGCCAAACTGCTTTCCACCACGCCGTCGAAAACGGCCACCAGCAAG
TGGTGGCCGCGCTGTTGGAGCGCGGCGCTGATATCCAAGCCGTCGACAGC
CTGGGAAGGACCGCTTTGCACGTCGCCGCTTACCATGGGCACAAGTGCGT
TGTGGAGACGCTGCTGTTGCACGGCGCGGACGTACACGCCAAAGCGCAGA
TAGGCTGGATGGCTGCGTACGACGAAAGCGACGCCGACAACGACGAATTA
CAAGATCAAGTAGAGGGGGTCCTGAACCACACTGCTGGCGTGAACGCCAC
CAGCCCATATGGCGTCACTGCTTTGCATCTTGCCGCTGCGGAAGGGCACC
GAGACGTGGTGGACATGCTGCTGTGGCACGACGCCAACTTGCACTGCAGA
GCCGACTTTGCTGGAATCACCGCTCTGCACGTAGCCGCTGCGAGCGGATA
CGAGCAAGTGGTGGTGGCGCTGTTGGCGCGCGGCGCCGACTTGCACGCCA
GGGATGACTTGAACCGCTTCAACGCTTTCCACTTTACCACTCACGAAGGA
CACGAGCGCGTGGTGGCGGTGCTGCTAGAGCGCGGCGCCAACGTGCACAG
CAAGCATCAATTTGGCGACACCGCTTTGCACTTGGCCGCGGCTAAGCGAC
ACGAGCGCGTAGCGGACATGTTGTGGAGCGCCGGTGCGGACCCATTCGCG
GACAACCACAAAGGCGAGTCGCCATTGCAGCTGCTGCCGCGCACGAGCCC
ACTCGCGGACAGGATGCGTCATAAACGACCATCACCGCCACCGTCGGTCG
CCCAACCATCACCGCCACCATCCGTTACCCATCTCTCACCGCCACCATCC
GTTACCCATCTCTCGTCGCCACCATCCGTTACCCATCTCTCACCGCCACC
AACAGCCGCCCCACAGCAGCAAGAGGGGCACCCGCCAGCCCAGCCAGTTG
ATAATGTGGCCGCCTGCGTGCACTTGGAACACGCCCCGTACCGAATCCTC
AAGCCGAACCCAATCACCGTCAATCTAAGCACTCAGTCAAAGAAACGTCC
GCGAGCAGGATCTCAGCGTGCTGCGAACAGTGAACGTCGCGTAAGCGTGC
TACAGGCAATCCACCAGAAGGCGGCAAAGGGTCCGCTTGAACTTCTTGGC
CGCGCTGTGGCTAACAAATTCCTTGTGCGCATTCGACTTCGGGAGCGTCA
TCGAATCAGAGGATTTGTGGAAGGCGTTGTGGTGGCTTTTGACCGACATA
TGAACATTGTCGTCAGGAATGCTGTGATTCAAGACTATGGACTTGATGCT
CGACAAGCAGGCCAGCTTCTAATTAGAGGGGAAAACATTGTACTCATCAC
TATTGCAACGTAA
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