Ggra6689.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6689.t1
Unique NameGgra6689.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length257
Homology
BLAST of Ggra6689.t1 vs. uniprot
Match: A0A2V3ICY3 (Pyridoxal 5'-phosphate synthase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ICY3_9FLOR)

HSP 1 Score: 367 bits (942), Expect = 2.940e-126
Identity = 177/256 (69.14%), Postives = 208/256 (81.25%), Query Frame = 0
Query:    1 MTNQCICSLQSVHKSVSTAATTTTATLSAADLRVNYSQQPLEETSLPEDPVQLFETWFQQAQQAKELEPNAMCLSTADGTGRPSARMVLLKAFNHTGFVWYTNYQSRKASQLEQNPFASLTFWWPSMERSVRIEGEVVRVPPEESDAYFNSRPPSSRLGAVASDQSKPLDSRQTMERRWDELQSAHLNDNGELVRPIHRPSHWGGYRLVPDHIEFWKGRSARLHDRIVFERALPRVQEASVDKLATFEWERQRLQP 256
            MTN C+C+LQS  K       +T+A L+ A LRVNYS Q L+ET L  DP+ LF TWF QA+ A+E EPNAMCLSTAD +GRPSARMVLLKAF+  GFVWYTNYQSRKAS L +NPFASLTFWWP+MERSVRIEG VVRVP EESDAYF+SRPPSSRLGA+ SDQSK + +RQ +E RW ELQ AHL+D+G+L RPI RPSHWGGYRL+PD IEFWKGRSARLHDRIV++R LP + + ++D+LA  +W  +RLQP
Sbjct:    1 MTNPCVCALQSASK------LSTSANLTVASLRVNYSNQGLDETQLTPDPIALFSTWFDQARSAQEHEPNAMCLSTADESGRPSARMVLLKAFDQRGFVWYTNYQSRKASNLSRNPFASLTFWWPTMERSVRIEGPVVRVPVEESDAYFHSRPPSSRLGAIVSDQSKEIKNRQLLELRWQELQDAHLDDDGQLTRPIERPSHWGGYRLIPDRIEFWKGRSARLHDRIVYQRDLPELSDHNLDQLAKLQWATKRLQP 250          
BLAST of Ggra6689.t1 vs. uniprot
Match: R7QMD8 (Pyridoxal 5'-phosphate synthase n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QMD8_CHOCR)

HSP 1 Score: 282 bits (722), Expect = 1.960e-92
Identity = 139/230 (60.43%), Postives = 167/230 (72.61%), Query Frame = 0
Query:   28 SAADLRVNYSQQP-LEETSLPEDPVQLFETWFQQAQQAKELEPNAMCLSTADGTGRPSARMVLLKAFNHTGFVWYTNYQSRKASQLEQNPFASLTFWWPSMERSVRIEGEVVRVPPEESDAYFNSRPPSSRLGAVASDQSKPLDSRQTMERRWDELQSAHLNDNGELVRPIHRPSHWGGYRLVPDHIEFWKGRSARLHDRIVFERALPRVQEASVDKLATFEWERQRLQP 256
            S + LRV+YS+ P L+E  LP  P  LF  WF+QA+ + + EPNAMCL+TA    RPSARMVLLKAF+  GFVWYTNY SRKA+QL  NPFA+LTFWWPS+ERSVRIEG+V RVP EESDAYF SRPP+SRLGA ASDQSKP+  R  +E RW+ L   HL++ G L + + RP  WGG+RLVPD +EFWKGR ARLHDRIV+E         S +   +  W + RLQP
Sbjct:   47 SVSSLRVSYSRAPALDEAMLPPAPFALFAAWFEQAKASGDPEPNAMCLATASPDARPSARMVLLKAFDDNGFVWYTNYGSRKAAQLADNPFAALTFWWPSLERSVRIEGKVDRVPTEESDAYFKSRPPASRLGAWASDQSKPVGERHVVEERWNGLVDDHLDEKGGLKKEVERPPQWGGFRLVPDRVEFWKGREARLHDRIVYELGENEDWTPSEELKGSSRWTKTRLQP 276          
BLAST of Ggra6689.t1 vs. uniprot
Match: A0A0G4EI35 (Pyridoxal 5'-phosphate synthase n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EI35_VITBC)

HSP 1 Score: 254 bits (648), Expect = 2.670e-81
Identity = 124/225 (55.11%), Postives = 158/225 (70.22%), Query Frame = 0
Query:   32 LRVNYSQQPLEETSLPEDPVQLFETWFQQAQQAKELEPNAMCLSTADGTGRPSARMVLLKAFNHTGFVWYTNYQSRKASQLEQNPFASLTFWWPSMERSVRIEGEVVRVPPEESDAYFNSRPPSSRLGAVASDQSKPLDSRQTMERRWDELQSAHLNDNGELVRPIHRPSHWGGYRLVPDHIEFWKGRSARLHDRIVFERALPRVQEASVDKLATFEWERQRLQP 256
            LR  YS + L+E S+P DP+ LF  WF+ A+    +EPNAMCLSTA   GRPSAR VLLK ++  GFV+YTNY+SRK  +L +NPFASLTFWW ++ERS+RIEG V +VPPEESDAYF SRP +SRLGA+ASDQS+P+ SR+ +E +W EL+  +     E    + RP HWGG+RLVP  IEFWKGR +RLHDR+V+ R     +          EW  +R+QP
Sbjct:   59 LRKEYSMKGLDEASMPADPLTLFGEWFEDAKTVS-VEPNAMCLSTASKEGRPSARFVLLKGYDERGFVFYTNYESRKGKELTENPFASLTFWWEALERSIRIEGRVQQVPPEESDAYFTSRPKASRLGAIASDQSRPIASREALEAKWSELEGRY-----EGTAEVPRPLHWGGFRLVPSRIEFWKGRESRLHDRLVYTRGEGEGEGGG-------EWRIERMQP 270          
BLAST of Ggra6689.t1 vs. uniprot
Match: A0A5J4Z515 (Pyridoxal 5'-phosphate synthase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z515_PORPP)

HSP 1 Score: 233 bits (595), Expect = 2.180e-73
Identity = 115/205 (56.10%), Postives = 144/205 (70.24%), Query Frame = 0
Query:   30 ADLRVNYSQQPLEETSL-----PEDPVQLFETWFQQAQQAKELEPNAMCLSTADGTGRPSARMVLLKAFNHTGFVWYTNYQSRKASQLEQNPFASLTFWWPSMERSVRIEGEVVRVPPEESDAYFNSRPPSSRLGAVASDQSKPLDSRQTMERRWDELQSAHLNDNGELVRPIHRPSHWGGYRLVPDHIEFWKGRSARLHDRIVF 229
            A LR  YS Q +E+  +      +DP  LF  WFQQA  A+  EPNAMCL+TA   G PSAR VLLK F+  GF WYTNY SRKA++LE+NP A+L FWW  MERSVRIEG V RV P ES  YF+SRP S+RLGA+ASDQS+P++SR  ++++++ L    L++NG     I RP+ WGG+RL P   EFWKGR +R+HDRIVF
Sbjct:   44 ATLRKEYSAQGIEDEDVGLHGDAQDPFALFRLWFQQAVDAQVHEPNAMCLATATKNGVPSARYVLLKGFDERGFCWYTNYGSRKAAELEENPHAALCFWWGEMERSVRIEGRVARVDPAESQQYFDSRPASARLGAIASDQSRPIESRAALDQKFENLTRTFLDENGAEKVKIERPALWGGFRLEPRVFEFWKGRESRVHDRIVF 248          
BLAST of Ggra6689.t1 vs. uniprot
Match: A0A7S3CLY1 (Pyridoxal 5'-phosphate synthase n=1 Tax=Strombidium rassoulzadegani TaxID=1082188 RepID=A0A7S3CLY1_9SPIT)

HSP 1 Score: 231 bits (589), Expect = 4.870e-73
Identity = 114/226 (50.44%), Postives = 156/226 (69.03%), Query Frame = 0
Query:   31 DLRVNYSQQPLEETSLPEDPVQLFETWFQQAQQAKELEPNAMCLSTADGTGRPSARMVLLKAFNHTGFVWYTNYQSRKASQLEQNPFASLTFWWPSMERSVRIEGEVVRVPPEESDAYFNSRPPSSRLGAVASDQSKPLDSRQTMERRWDELQSAHLNDNGELVRPIHRPSHWGGYRLVPDHIEFWKGRSARLHDRIVFERALPRVQEASVDKLATFEWERQRLQP 256
            DLR  YS Q L E     +P  LF+TWF +A +A  LEPNAMC+S+     +PS+R VLLK F+  GFV+YTNY+SRK+ QL +NP A+ TFWW ++ER +RIEG+V +V  +ESD YFNSR   S++GA  SDQS+P+++R  +E++ DEL+  +     E +  + RP HWGG+R++P +IEFWKGR +RLHDRIVFER     +EAS +      W ++RLQP
Sbjct:   12 DLRKEYSSQQLNEEDAGANPFDLFKTWFDEAVKADVLEPNAMCVSSCGKDLKPSSRFVLLKGFDERGFVFYTNYESRKSQQLTENPNAAATFWWGALERQIRIEGQVEKVSSDESDQYFNSRGKGSQIGAWTSDQSRPIENRAELEKKEDELKKKY-----EAMEKVERPPHWGGWRIIPSYIEFWKGRQSRLHDRIVFER-----EEASQNL-----WSKKRLQP 222          
BLAST of Ggra6689.t1 vs. uniprot
Match: M2XQZ4 (Pyridoxal 5'-phosphate synthase n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XQZ4_GALSU)

HSP 1 Score: 243 bits (620), Expect = 9.650e-72
Identity = 124/228 (54.39%), Postives = 155/228 (67.98%), Query Frame = 0
Query:   30 ADLRVNYSQQPLEETSLPEDPVQLFETWFQQAQQAKELEPNAMCLSTADGTGRPSARMVLLKAFNHTGFVWYTNYQSRKASQLEQNPFASLTFWWPSMERSVRIEGEVVRVPPEESDAYFNSRPPSSRLGAVASDQSKPLDSRQTMERRWDELQSAH-LNDNGELVRPIHRPSHWGGYRLVPDHIEFWKGRSARLHDRIVFERALPRVQEASVDKLATFEWERQRLQP 256
            A LR  YS   L+E++L EDP  LF  W ++A  A+  EPNAMCL+T D +GRPS R VLLK F++ GFVWYTNY SRKA  LE NPFA+LTFWW  +ERSVR+EG+V +V   ESD+YF SRP  SRL A+ S+QSKP+ SR  +E+++ +L   + L  +G     I RP  WGGYRLVPD IEFWKG   RLHDRI + R    V  +S ++L    W+R RLQP
Sbjct:  556 ASLREEYSSTGLDESTLTEDPFTLFRQWLEEAVAAQVREPNAMCLATVDQSGRPSNRYVLLKGFDNRGFVWYTNYTSRKAQHLESNPFAALTFWWGDLERSVRVEGKVFKVSSSESDSYFVSRPVKSRLAAIVSEQSKPVSSRSELEKKFQDLALYYGLQTDGTCSESIPRPETWGGYRLVPDSIEFWKGMRDRLHDRIKYVRE---VDWSSDNELKNSLWQRYRLQP 780          
BLAST of Ggra6689.t1 vs. uniprot
Match: A0A0Q8R3Z3 (Pyridoxine/pyridoxamine 5'-phosphate oxidase n=1 Tax=Noviherbaspirillum sp. Root189 TaxID=1736487 RepID=A0A0Q8R3Z3_9BURK)

HSP 1 Score: 226 bits (577), Expect = 2.240e-71
Identity = 118/230 (51.30%), Postives = 160/230 (69.57%), Query Frame = 0
Query:   27 LSAADLRVNYSQQPLEETSLPEDPVQLFETWFQQAQQAKELEPNAMCLSTADGTGRPSARMVLLKAFNHTGFVWYTNYQSRKASQLEQNPFASLTFWWPSMERSVRIEGEVVRVPPEESDAYFNSRPPSSRLGAVASDQSKPLDSRQTMERRWDELQSAHLNDNGELVRPIHRPSHWGGYRLVPDHIEFWKGRSARLHDRIVFERALPRVQEASVDKLATFEWERQRLQP 256
            +S ADLR++YS+  L E  +  DP+Q F TWF +A  A+  E NAM +ST    GRPS+R++L+K  +  GF ++TNY SRK ++LEQN +A+L F+W  +ER VRIEG V R+   ESDAYF SRP  SRLGA+AS QS+P+DSR+ ME+R+ +++ A+    GE  +P+ RP+HWGGYRLVPD+IEFW+GR +R HDRI +     R+Q       A   W+RQRLQP
Sbjct:    1 MSIADLRIDYSRASLTEQDVHPDPIQQFSTWFGEAIAAQVREANAMSVSTVGANGRPSSRILLIKDIDARGFTFFTNYDSRKGNELEQNKYAALLFYWIELERQVRIEGRVERISATESDAYFQSRPLKSRLGAIASSQSQPIDSREAMEQRFTQVEQAY----GE--QPV-RPAHWGGYRLVPDYIEFWQGRPSRFHDRIAY-----RLQ-------ADGTWQRQRLQP 211          
BLAST of Ggra6689.t1 vs. uniprot
Match: A0A7Y0DJ67 (Pyridoxine/pyridoxamine 5'-phosphate oxidase n=2 Tax=Glaciimonas sp. TaxID=2021635 RepID=A0A7Y0DJ67_9BURK)

HSP 1 Score: 226 bits (575), Expect = 4.490e-71
Identity = 116/230 (50.43%), Postives = 151/230 (65.65%), Query Frame = 0
Query:   27 LSAADLRVNYSQQPLEETSLPEDPVQLFETWFQQAQQAKELEPNAMCLSTADGTGRPSARMVLLKAFNHTGFVWYTNYQSRKASQLEQNPFASLTFWWPSMERSVRIEGEVVRVPPEESDAYFNSRPPSSRLGAVASDQSKPLDSRQTMERRWDELQSAHLNDNGELVRPIHRPSHWGGYRLVPDHIEFWKGRSARLHDRIVFERALPRVQEASVDKLATFEWERQRLQP 256
            +S ADLR +YSQ  L E     DP+  F+ WF +A +A   E NAM L+T    GRPS+R+VL+K F+H GF+W+TNYQSRK  +L QNP+A+L F W  +ER VRIEG V  +  EE+DAYF SRP  SR+GA+AS QS+P+ SRQ +E R+ + ++ H         P  RP++WGGYRLVPD+IEFW+GRS+RLHDRI F+              A   W+R RLQP
Sbjct:    1 MSIADLRKDYSQASLSEADTAADPMAQFKKWFDEALKANVPEANAMSLATVAANGRPSSRIVLIKEFDHRGFIWFTNYQSRKGHELHQNPYAALLFHWIELERQVRIEGRVESISAEENDAYFQSRPLGSRIGAIASSQSEPVASRQVLETRYADAEAKHG------AHPP-RPAYWGGYRLVPDYIEFWQGRSSRLHDRIAFKLN------------ANGSWDRVRLQP 211          
BLAST of Ggra6689.t1 vs. uniprot
Match: A0A0E3UYR4 (Pyridoxine/pyridoxamine 5'-phosphate oxidase n=1 Tax=Pontibacter korlensis TaxID=400092 RepID=A0A0E3UYR4_9BACT)

HSP 1 Score: 225 bits (574), Expect = 7.500e-71
Identity = 113/229 (49.34%), Postives = 156/229 (68.12%), Query Frame = 0
Query:   30 ADLRVNYSQQPLEETSLPEDPVQLFETWFQQAQQAKELEPNAMCLSTADGTGRPSARMVLLKAFNHTGFVWYTNYQSRKASQLEQNPFASLTFWWPSMERSVRIEGEVVRVPPEESDAYFNSRPPSSRLGAVASDQSKPLDSRQTMERRWDEL--QSAHLNDNGELVRPIHRPSHWGGYRLVPDHIEFWKGRSARLHDRIVFERALPRVQEASVDKLATFEWERQRLQP 256
            AD+R NY++Q L E S+ +DPVQ F+ W ++A Q++  EP A+ LST    G+PSAR+VLLK FN  GF +YTNYQSRK  +L +NP+ASLTF+WP++ER VR+EG+V +  PE+SD YF+SRP  S++GA AS QS+ +D R+ +E+R  +   Q +H++        + RP HWGGY LVP +IEFW+GR +RLHDRI FE             L T +W+ +RL P
Sbjct:    8 ADIRTNYTKQALTEDSVAKDPVQQFKAWLEEAIQSEVDEPTALVLSTVSAAGKPSARVVLLKGFNEQGFKFYTNYQSRKGQELAENPYASLTFFWPALERQVRVEGKVEKASPEDSDVYFHSRPKGSQIGAWASPQSQVIDKREVLEQREKQYTEQFSHVDQ-------VPRPQHWGGYVLVPHYIEFWQGRPSRLHDRIAFE-------------LETNDWKIKRLAP 216          
BLAST of Ggra6689.t1 vs. uniprot
Match: A0A399SC51 (Pyridoxine/pyridoxamine 5'-phosphate oxidase n=1 Tax=Pontibacter oryzae TaxID=2304593 RepID=A0A399SC51_9BACT)

HSP 1 Score: 225 bits (574), Expect = 7.500e-71
Identity = 105/200 (52.50%), Postives = 144/200 (72.00%), Query Frame = 0
Query:   30 ADLRVNYSQQPLEETSLPEDPVQLFETWFQQAQQAKELEPNAMCLSTADGTGRPSARMVLLKAFNHTGFVWYTNYQSRKASQLEQNPFASLTFWWPSMERSVRIEGEVVRVPPEESDAYFNSRPPSSRLGAVASDQSKPLDSRQTMERRWDELQSAHLNDNGELVRPIHRPSHWGGYRLVPDHIEFWKGRSARLHDRIVF 229
            AD+R+NYS+Q L E S+ ++P Q F+ W Q+A  A+  EP AM LST  GTG+PSAR+VLLK  +  G+ ++TNY SRK   LE+NP+ASLTF+WP++ER VRIEG++V+V   ESD YF SRP  S++GA AS QS+ +++R+ +E+R  E      N N      + RP+HWGGYRL PD +EFW+GR +RLHDRI++
Sbjct:    8 ADIRINYSRQELTEASVSQNPTQQFQQWLQEALDAEVDEPTAMVLSTVSGTGKPSARVVLLKGLDEQGYTFFTNYDSRKGHDLEENPYASLTFFWPALERQVRIEGKIVKVAAAESDTYFQSRPKGSQIGAWASPQSQVIEAREVLEQREQEFSEKFANQN-----VVPRPAHWGGYRLQPDRLEFWQGRPSRLHDRIMY 202          
The following BLAST results are available for this feature:
BLAST of Ggra6689.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3ICY32.940e-12669.14Pyridoxal 5'-phosphate synthase n=1 Tax=Gracilario... [more]
R7QMD81.960e-9260.43Pyridoxal 5'-phosphate synthase n=1 Tax=Chondrus c... [more]
A0A0G4EI352.670e-8155.11Pyridoxal 5'-phosphate synthase n=2 Tax=Vitrella b... [more]
A0A5J4Z5152.180e-7356.10Pyridoxal 5'-phosphate synthase n=1 Tax=Porphyridi... [more]
A0A7S3CLY14.870e-7350.44Pyridoxal 5'-phosphate synthase n=1 Tax=Strombidiu... [more]
M2XQZ49.650e-7254.39Pyridoxal 5'-phosphate synthase n=1 Tax=Galdieria ... [more]
A0A0Q8R3Z32.240e-7151.30Pyridoxine/pyridoxamine 5'-phosphate oxidase n=1 T... [more]
A0A7Y0DJ674.490e-7150.43Pyridoxine/pyridoxamine 5'-phosphate oxidase n=2 T... [more]
A0A0E3UYR47.500e-7149.34Pyridoxine/pyridoxamine 5'-phosphate oxidase n=1 T... [more]
A0A399SC517.500e-7152.50Pyridoxine/pyridoxamine 5'-phosphate oxidase n=1 T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019576Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminalPFAMPF10590PNP_phzG_Ccoord: 203..256
e-value: 1.9E-17
score: 62.9
IPR012349FMN-binding split barrelGENE3D2.30.110.10coord: 22..256
e-value: 3.0E-79
score: 267.3
IPR000659Pyridoxamine 5'-phosphate oxidasePIRSFPIRSF000190Pyd_amn-ph_oxdcoord: 19..256
e-value: 9.2E-77
score: 254.0
IPR000659Pyridoxamine 5'-phosphate oxidaseTIGRFAMTIGR00558TIGR00558coord: 24..232
e-value: 1.3E-78
score: 261.5
IPR000659Pyridoxamine 5'-phosphate oxidasePANTHERPTHR10851PYRIDOXINE-5-PHOSPHATE OXIDASEcoord: 16..256
IPR000659Pyridoxamine 5'-phosphate oxidaseHAMAPMF_01629PdxHcoord: 35..256
score: 36.302498
IPR011576Pyridoxamine 5'-phosphate oxidase, putativePFAMPF01243Putative_PNPOxcoord: 68..144
e-value: 5.0E-24
score: 84.3
NoneNo IPR availablePIRSRPIRSR000190-2PIRSR000190-2coord: 27..233
e-value: 1.6E-76
score: 253.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 149..169
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 144..169
NoneNo IPR availablePANTHERPTHR10851:SF0PYRIDOXINE-5'-PHOSPHATE OXIDASEcoord: 16..256
NoneNo IPR availableSUPERFAMILY50475FMN-binding split barrelcoord: 40..256

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:199419..200189 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6689.t1Ggra6689.t1Gracilaria gracilis GNS1m malemRNAtig00000056_pilon 199419..200189 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6689.t1 ID=Ggra6689.t1|Name=Ggra6689.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=257bp
MTNQCICSLQSVHKSVSTAATTTTATLSAADLRVNYSQQPLEETSLPEDP
VQLFETWFQQAQQAKELEPNAMCLSTADGTGRPSARMVLLKAFNHTGFVW
YTNYQSRKASQLEQNPFASLTFWWPSMERSVRIEGEVVRVPPEESDAYFN
SRPPSSRLGAVASDQSKPLDSRQTMERRWDELQSAHLNDNGELVRPIHRP
SHWGGYRLVPDHIEFWKGRSARLHDRIVFERALPRVQEASVDKLATFEWE
RQRLQP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019576Pyridoxamine_oxidase_dimer_C
IPR012349Split_barrel_FMN-bd
IPR000659Pyridox_Oxase
IPR011576Pyridox_Oxase_put