Ggra6689.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6689.t1
Unique NameGgra6689.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length257
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:199419..200189 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005709191.1
Preferred namePDX3
PFAMsPNP_phzG_C,Putative_PNPOx
Max annot lvl2759|Eukaryota
KEGG rclassRC00048,RC00116
KEGG koko:K00275
KEGG ReactionR00277,R00278,R01710,R01711
KEGG Pathwayko00750,ko01100,ko01120,map00750,map01100,map01120
KEGG ModuleM00124
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004733,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005758,GO:0006081,GO:0006725,GO:0006732,GO:0006766,GO:0006767,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009110,GO:0009443,GO:0009987,GO:0010181,GO:0016491,GO:0016638,GO:0016641,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0032553,GO:0034641,GO:0036094,GO:0042364,GO:0042816,GO:0042818,GO:0042819,GO:0042822,GO:0042823,GO:0043094,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046184,GO:0046483,GO:0048037,GO:0050662,GO:0051186,GO:0051188,GO:0055114,GO:0070013,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:0097159,GO:0097164,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617
Evalue4.71e-71
EggNOG OGsCOG0259@1|root,KOG2586@2759|Eukaryota
EC1.4.3.5
Descriptionpyridoxamine-phosphate oxidase activity
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6689Ggra6689Gracilaria gracilis GNS1m malegenetig00000056_pilon 199419..200189 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6689.t1.start1Ggra6689.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 199419..199421 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6689.t1.CDS1Ggra6689.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 199419..200189 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6689.t1.exon1Ggra6689.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 199419..200189 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6689.t1.stop1Ggra6689.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 200187..200189 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6689.t1Ggra6689.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 199419..200189 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6689.t1 ID=Ggra6689.t1|Name=Ggra6689.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=257bp
MTNQCICSLQSVHKSVSTAATTTTATLSAADLRVNYSQQPLEETSLPEDP
VQLFETWFQQAQQAKELEPNAMCLSTADGTGRPSARMVLLKAFNHTGFVW
YTNYQSRKASQLEQNPFASLTFWWPSMERSVRIEGEVVRVPPEESDAYFN
SRPPSSRLGAVASDQSKPLDSRQTMERRWDELQSAHLNDNGELVRPIHRP
SHWGGYRLVPDHIEFWKGRSARLHDRIVFERALPRVQEASVDKLATFEWE
RQRLQP*
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spliced messenger RNA

>Ggra6689.t1 ID=Ggra6689.t1|Name=Ggra6689.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=771bp|location=Sequence derived from alignment at tig00000056_pilon:199419..200189+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCAATCAGTGCATTTGTTCGTTGCAGAGTGTGCACAAGTCTGTTTC
CACTGCTGCTACAACTACAACCGCTACGCTCTCCGCGGCAGACCTCAGAG
TCAACTACTCTCAACAACCTCTGGAGGAAACCTCGCTCCCAGAAGACCCG
GTTCAACTCTTCGAAACCTGGTTCCAACAAGCACAGCAGGCAAAAGAGCT
GGAACCCAATGCCATGTGTCTCTCCACCGCTGATGGGACCGGCAGACCTT
CCGCTCGAATGGTGCTGCTCAAAGCCTTTAACCACACTGGTTTCGTGTGG
TATACCAACTATCAAAGCCGGAAAGCTTCCCAACTAGAGCAGAACCCCTT
CGCCTCTCTTACGTTTTGGTGGCCATCCATGGAACGTTCCGTGCGCATTG
AAGGTGAGGTGGTGCGCGTACCGCCCGAGGAGTCTGATGCGTACTTCAAC
AGTCGGCCCCCAAGCAGTCGTCTCGGTGCCGTTGCCAGTGATCAGAGCAA
ACCTCTGGACAGTCGCCAAACTATGGAAAGGCGCTGGGATGAGCTTCAGT
CCGCTCACCTCAACGACAACGGTGAATTAGTCCGTCCCATTCACCGACCG
TCGCATTGGGGAGGTTACCGGCTCGTGCCAGATCATATTGAGTTTTGGAA
GGGGCGCTCCGCCCGATTGCATGACAGAATCGTTTTCGAGCGCGCTTTAC
CGCGTGTTCAGGAAGCCTCCGTCGACAAGCTGGCCACTTTCGAGTGGGAG
AGACAGCGATTACAACCATAA
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protein sequence of Ggra6689.t1

>Ggra6689.t1 ID=Ggra6689.t1|Name=Ggra6689.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=257bp
MTNQCICSLQSVHKSVSTAATTTTATLSAADLRVNYSQQPLEETSLPEDP
VQLFETWFQQAQQAKELEPNAMCLSTADGTGRPSARMVLLKAFNHTGFVW
YTNYQSRKASQLEQNPFASLTFWWPSMERSVRIEGEVVRVPPEESDAYFN
SRPPSSRLGAVASDQSKPLDSRQTMERRWDELQSAHLNDNGELVRPIHRP
SHWGGYRLVPDHIEFWKGRSARLHDRIVFERALPRVQEASVDKLATFEWE
RQRLQP*
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mRNA from alignment at tig00000056_pilon:199419..200189+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6689.t1 ID=Ggra6689.t1|Name=Ggra6689.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=771bp|location=Sequence derived from alignment at tig00000056_pilon:199419..200189+ (Gracilaria gracilis GNS1m male)
ATGACCAATCAGTGCATTTGTTCGTTGCAGAGTGTGCACAAGTCTGTTTC
CACTGCTGCTACAACTACAACCGCTACGCTCTCCGCGGCAGACCTCAGAG
TCAACTACTCTCAACAACCTCTGGAGGAAACCTCGCTCCCAGAAGACCCG
GTTCAACTCTTCGAAACCTGGTTCCAACAAGCACAGCAGGCAAAAGAGCT
GGAACCCAATGCCATGTGTCTCTCCACCGCTGATGGGACCGGCAGACCTT
CCGCTCGAATGGTGCTGCTCAAAGCCTTTAACCACACTGGTTTCGTGTGG
TATACCAACTATCAAAGCCGGAAAGCTTCCCAACTAGAGCAGAACCCCTT
CGCCTCTCTTACGTTTTGGTGGCCATCCATGGAACGTTCCGTGCGCATTG
AAGGTGAGGTGGTGCGCGTACCGCCCGAGGAGTCTGATGCGTACTTCAAC
AGTCGGCCCCCAAGCAGTCGTCTCGGTGCCGTTGCCAGTGATCAGAGCAA
ACCTCTGGACAGTCGCCAAACTATGGAAAGGCGCTGGGATGAGCTTCAGT
CCGCTCACCTCAACGACAACGGTGAATTAGTCCGTCCCATTCACCGACCG
TCGCATTGGGGAGGTTACCGGCTCGTGCCAGATCATATTGAGTTTTGGAA
GGGGCGCTCCGCCCGATTGCATGACAGAATCGTTTTCGAGCGCGCTTTAC
CGCGTGTTCAGGAAGCCTCCGTCGACAAGCTGGCCACTTTCGAGTGGGAG
AGACAGCGATTACAACCATAA
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Coding sequence (CDS) from alignment at tig00000056_pilon:199419..200189+

>Ggra6689.t1 ID=Ggra6689.t1|Name=Ggra6689.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=771bp|location=Sequence derived from alignment at tig00000056_pilon:199419..200189+ (Gracilaria gracilis GNS1m male)
ATGACCAATCAGTGCATTTGTTCGTTGCAGAGTGTGCACAAGTCTGTTTC
CACTGCTGCTACAACTACAACCGCTACGCTCTCCGCGGCAGACCTCAGAG
TCAACTACTCTCAACAACCTCTGGAGGAAACCTCGCTCCCAGAAGACCCG
GTTCAACTCTTCGAAACCTGGTTCCAACAAGCACAGCAGGCAAAAGAGCT
GGAACCCAATGCCATGTGTCTCTCCACCGCTGATGGGACCGGCAGACCTT
CCGCTCGAATGGTGCTGCTCAAAGCCTTTAACCACACTGGTTTCGTGTGG
TATACCAACTATCAAAGCCGGAAAGCTTCCCAACTAGAGCAGAACCCCTT
CGCCTCTCTTACGTTTTGGTGGCCATCCATGGAACGTTCCGTGCGCATTG
AAGGTGAGGTGGTGCGCGTACCGCCCGAGGAGTCTGATGCGTACTTCAAC
AGTCGGCCCCCAAGCAGTCGTCTCGGTGCCGTTGCCAGTGATCAGAGCAA
ACCTCTGGACAGTCGCCAAACTATGGAAAGGCGCTGGGATGAGCTTCAGT
CCGCTCACCTCAACGACAACGGTGAATTAGTCCGTCCCATTCACCGACCG
TCGCATTGGGGAGGTTACCGGCTCGTGCCAGATCATATTGAGTTTTGGAA
GGGGCGCTCCGCCCGATTGCATGACAGAATCGTTTTCGAGCGCGCTTTAC
CGCGTGTTCAGGAAGCCTCCGTCGACAAGCTGGCCACTTTCGAGTGGGAG
AGACAGCGATTACAACCATAA
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