Ggra6475.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6475.t1
Unique NameGgra6475.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length334
Homology
BLAST of Ggra6475.t1 vs. uniprot
Match: A0A2V3III4 (DUF4203 domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3III4_9FLOR)

HSP 1 Score: 423 bits (1088), Expect = 6.640e-146
Identity = 228/336 (67.86%), Postives = 278/336 (82.74%), Query Frame = 0
Query:    1 MAVVDSVSDSADAIFSNFNEYVASHQDGIVALLLFVGVIVTFAGRVLLTPTVFLLGFIPSSTAITAFAFAFIADRKPSHPRVLGGVSMVAAVATGTLIGIIVLRLLFGIATFLLCAGFGAVIVLVVHLFLLEPSVGPNALIILYSIVIIAALLSGLFSVSYPEPAIILGTSFDGAALAVFSLARFLGHRPKLLAEVPEGSQIPVMWAIGYATATLLLGIFGAMNQWQVALADRIVAAAAQKANPSNVGESKDNDTIGYSVQGDQNQLLLP--SEPPRTPTYEREPLHSPIGTSTYGAIEQED-QYTVLHNIGAGPLPDNLEMLKNAKDTKMSHTPL 333
            MA+VDS+SDSAD+I SNFN Y ASH+DGI+ALLLFVGV+V+F+GRVLLTPTVFLLGFIPSST ITA A A+I D+KP++PR++G ++M+ AVA G L+G+I+LRLLF IATFLLCAGFGAVIVL+VHLFLLEPSVGPNALIILYSIVI+AALL+GLFSVSYP+ AIILGTSFDGAALAVFSLARFLGHRPKLL +VP+G+QIP +WAIGYA+ATLLLGIFGAM Q QVA+AD I+AAAA+K + +      +   +  S+   + Q L+P  +EPP            PIG STYGA++Q+D QY+V+HNIGA PLP +L+++KNAKD K +  PL
Sbjct:    1 MAIVDSLSDSADSILSNFNTYAASHEDGIIALLLFVGVVVSFSGRVLLTPTVFLLGFIPSSTTITALALAYIQDKKPANPRIIGALAMLCAVAVGVLVGVIMLRLLFRIATFLLCAGFGAVIVLIVHLFLLEPSVGPNALIILYSIVILAALLAGLFSVSYPDTAIILGTSFDGAALAVFSLARFLGHRPKLLIQVPQGAQIPALWAIGYASATLLLGIFGAMTQRQVAVADAIIAAAAEKRDSTR---EHNESELPESLPTTEQQHLIPFHAEPPHXXXXXXXXXXXPIGNSTYGAVDQDDSQYSVVHNIGAEPLPVSLDIIKNAKDAKGAQLPL 333          
BLAST of Ggra6475.t1 vs. uniprot
Match: R7QEI9 (DUF4203 domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QEI9_CHOCR)

HSP 1 Score: 296 bits (759), Expect = 5.720e-96
Identity = 178/333 (53.45%), Postives = 230/333 (69.07%), Query Frame = 0
Query:    1 MAVVDSVSDSADAIFSNFNEYVASHQDGIVALLLFVGVIVTFAGRVLLTPTVFLLGFIPSSTAITAFAFAFIADRKPSHPR--VLGGVSMVAAVATGTLIGIIVLRLLFGIATFLLCAGFGAVIVLVVHLFLLEPSVGPNALIILYSIVIIAALLSGLFSVSYPEPAIILGTSFDGAALAVFSLARFLGHRPKLLA-EVPEGSQIPV---MWAIGYATATLLLGIFGAMNQWQVALADRIVAAAAQ-KANPSNVGESKDNDTIGYSVQGDQ-NQLLLPSEPPRTPTYEREPLHSPIGTSTYGAIEQED-QYTVLHNIGAGPLPDNLEMLKNAK 324
            M VVDSVS SA+++F+  N Y ASH DG+VAL LF GVIV F+GR +L PTVFL+GF P++  ITA   A IA+  P   R  +L  V +  A   G L+G+++LRLLFGIATF+LCAGFGAV+V V+HLFL+EP+ G N  I+LY I I A+LL GLFSVSYPE  IILGT+FDGAAL+V+SLARFLGHRP + A ++P  +        WAIGYA AT++LG+FG M+Q +VALAD I+    Q K NPS     ++ + I Y    D+ + LL  +EPPRTP Y +  + SP   S YGA+EQ++ QY+V+ N+GAGPL  + E    AK
Sbjct:    1 MTVVDSVSGSANSLFTAVNAYAASHHDGLVALALFAGVIVAFSGRTILKPTVFLIGFAPTAVIITALGLALIAEEHPGTDRQSLLEAVVVALATLAGILVGVVMLRLLFGIATFMLCAGFGAVMVFVLHLFLMEPATGKNGQIVLYVIAIFASLLVGLFSVSYPETGIILGTAFDGAALSVYSLARFLGHRPNIFAADIPTATDAEPDSPWWAIGYAIATIVLGVFGGMSQRRVALADAIITRQRQIKDNPSEPTYDEEAN-IPYGSNLDEIDPLLAVAEPPRTPPYMKSSVSSP--GSRYGALEQDNNQYSVVRNLGAGPLGQSEEDFPPAK 330          
The following BLAST results are available for this feature:
BLAST of Ggra6475.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3III46.640e-14667.86DUF4203 domain-containing protein n=1 Tax=Gracilar... [more]
R7QEI95.720e-9653.45DUF4203 domain-containing protein n=1 Tax=Chondrus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025256Domain of unknown function DUF4203PFAMPF13886DUF4203coord: 30..226
e-value: 1.1E-13
score: 51.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 245..272
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 245..278
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 49..53
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 165..183
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 184..203
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 204..223
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..28
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 109..131
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 160..164
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 104..108
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 54..73
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 74..81
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 29..48
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 132..137
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 82..103
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 138..159
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 224..333
NoneNo IPR availableTMHMMTMhelixcoord: 139..158
NoneNo IPR availableTMHMMTMhelixcoord: 202..224
NoneNo IPR availableTMHMMTMhelixcoord: 165..187
NoneNo IPR availableTMHMMTMhelixcoord: 51..73
NoneNo IPR availableTMHMMTMhelixcoord: 107..129
NoneNo IPR availableTMHMMTMhelixcoord: 83..105
NoneNo IPR availableTMHMMTMhelixcoord: 22..44
IPR040236Transmembrane protein 198PANTHERPTHR31247TRANSMEMBRANE PROTEIN 198 FAMILY MEMBERcoord: 6..236

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000074_piloncontigtig00000074_pilon:225557..226558 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6475.t1Ggra6475.t1Gracilaria gracilis GNS1m malemRNAtig00000074_pilon 225557..226558 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6475.t1 ID=Ggra6475.t1|Name=Ggra6475.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=334bp
MAVVDSVSDSADAIFSNFNEYVASHQDGIVALLLFVGVIVTFAGRVLLTP
TVFLLGFIPSSTAITAFAFAFIADRKPSHPRVLGGVSMVAAVATGTLIGI
IVLRLLFGIATFLLCAGFGAVIVLVVHLFLLEPSVGPNALIILYSIVIIA
ALLSGLFSVSYPEPAIILGTSFDGAALAVFSLARFLGHRPKLLAEVPEGS
QIPVMWAIGYATATLLLGIFGAMNQWQVALADRIVAAAAQKANPSNVGES
KDNDTIGYSVQGDQNQLLLPSEPPRTPTYEREPLHSPIGTSTYGAIEQED
QYTVLHNIGAGPLPDNLEMLKNAKDTKMSHTPL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR025256DUF4203
IPR040236TMEM198