Ggra6475.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6475.t1
Unique NameGgra6475.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length334
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000074_piloncontigtig00000074_pilon:225557..226558 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog65071.PYU1_T002536
PFAMsDUF4203
Max annot lvl121069|Pythiales
Evalue0.000121
EggNOG OGs2F35U@1|root,2T44T@2759|Eukaryota,1MGTP@121069|Pythiales
Descriptionfunction. Source PGD
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6475Ggra6475Gracilaria gracilis GNS1m malegenetig00000074_pilon 225557..226558 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6475.t1.stop1Ggra6475.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000074_pilon 225557..225559 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6475.t1.CDS1Ggra6475.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000074_pilon 225557..226558 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6475.t1.exon1Ggra6475.t1.exon1Gracilaria gracilis GNS1m maleexontig00000074_pilon 225557..226558 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6475.t1.start1Ggra6475.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000074_pilon 226556..226558 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6475.t1Ggra6475.t1Gracilaria gracilis GNS1m malepolypeptidetig00000074_pilon 225557..226558 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6475.t1 ID=Ggra6475.t1|Name=Ggra6475.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=334bp
MAVVDSVSDSADAIFSNFNEYVASHQDGIVALLLFVGVIVTFAGRVLLTP
TVFLLGFIPSSTAITAFAFAFIADRKPSHPRVLGGVSMVAAVATGTLIGI
IVLRLLFGIATFLLCAGFGAVIVLVVHLFLLEPSVGPNALIILYSIVIIA
ALLSGLFSVSYPEPAIILGTSFDGAALAVFSLARFLGHRPKLLAEVPEGS
QIPVMWAIGYATATLLLGIFGAMNQWQVALADRIVAAAAQKANPSNVGES
KDNDTIGYSVQGDQNQLLLPSEPPRTPTYEREPLHSPIGTSTYGAIEQED
QYTVLHNIGAGPLPDNLEMLKNAKDTKMSHTPL*
back to top

spliced messenger RNA

>Ggra6475.t1 ID=Ggra6475.t1|Name=Ggra6475.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1002bp|location=Sequence derived from alignment at tig00000074_pilon:225557..226558- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGTAGTTGACTCCGTTTCAGACTCGGCTGATGCCATCTTTTCTAA
CTTCAACGAATACGTGGCATCTCATCAGGATGGGATCGTCGCCTTGCTTC
TCTTTGTTGGAGTGATTGTAACTTTTGCTGGTCGTGTTCTATTAACCCCA
ACCGTTTTCCTCTTGGGATTCATTCCGTCTTCCACAGCCATTACCGCCTT
CGCATTTGCTTTCATTGCAGATCGTAAACCCAGTCACCCACGAGTCCTTG
GTGGAGTTTCTATGGTCGCTGCCGTTGCCACTGGGACACTTATAGGCATC
ATAGTACTTCGGCTTCTCTTTGGAATAGCGACCTTCTTGCTATGCGCCGG
TTTCGGTGCTGTGATAGTACTGGTTGTTCACCTCTTCCTACTGGAACCAT
CTGTTGGTCCGAATGCGCTCATTATTTTGTACTCGATTGTGATAATTGCC
GCGCTGCTTTCCGGGCTCTTCTCGGTGAGTTACCCGGAGCCAGCGATCAT
CCTCGGCACTTCGTTTGATGGTGCCGCTTTAGCCGTCTTTTCGTTGGCGC
GATTTCTTGGACACCGTCCAAAGTTGCTTGCGGAAGTCCCCGAAGGCTCC
CAAATACCAGTCATGTGGGCAATTGGATACGCGACAGCGACGTTGCTCCT
TGGCATATTTGGCGCCATGAATCAATGGCAAGTTGCTTTAGCTGACCGAA
TAGTCGCTGCCGCAGCTCAAAAAGCAAATCCCTCAAACGTTGGAGAGAGC
AAAGATAATGATACAATCGGGTACAGCGTGCAAGGGGATCAAAACCAATT
ATTACTGCCTTCCGAACCTCCTCGTACACCCACATACGAAAGAGAGCCTT
TACATAGTCCTATTGGTACGAGCACGTATGGGGCTATAGAGCAAGAAGAT
CAGTACACTGTGCTCCATAATATCGGTGCCGGGCCGCTTCCCGACAACCT
TGAGATGCTCAAAAACGCAAAGGACACGAAGATGTCACACACACCTCTAT
GA
back to top

protein sequence of Ggra6475.t1

>Ggra6475.t1 ID=Ggra6475.t1|Name=Ggra6475.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=334bp
MAVVDSVSDSADAIFSNFNEYVASHQDGIVALLLFVGVIVTFAGRVLLTP
TVFLLGFIPSSTAITAFAFAFIADRKPSHPRVLGGVSMVAAVATGTLIGI
IVLRLLFGIATFLLCAGFGAVIVLVVHLFLLEPSVGPNALIILYSIVIIA
ALLSGLFSVSYPEPAIILGTSFDGAALAVFSLARFLGHRPKLLAEVPEGS
QIPVMWAIGYATATLLLGIFGAMNQWQVALADRIVAAAAQKANPSNVGES
KDNDTIGYSVQGDQNQLLLPSEPPRTPTYEREPLHSPIGTSTYGAIEQED
QYTVLHNIGAGPLPDNLEMLKNAKDTKMSHTPL*
back to top

mRNA from alignment at tig00000074_pilon:225557..226558-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6475.t1 ID=Ggra6475.t1|Name=Ggra6475.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1002bp|location=Sequence derived from alignment at tig00000074_pilon:225557..226558- (Gracilaria gracilis GNS1m male)
ATGGCGGTAGTTGACTCCGTTTCAGACTCGGCTGATGCCATCTTTTCTAA
CTTCAACGAATACGTGGCATCTCATCAGGATGGGATCGTCGCCTTGCTTC
TCTTTGTTGGAGTGATTGTAACTTTTGCTGGTCGTGTTCTATTAACCCCA
ACCGTTTTCCTCTTGGGATTCATTCCGTCTTCCACAGCCATTACCGCCTT
CGCATTTGCTTTCATTGCAGATCGTAAACCCAGTCACCCACGAGTCCTTG
GTGGAGTTTCTATGGTCGCTGCCGTTGCCACTGGGACACTTATAGGCATC
ATAGTACTTCGGCTTCTCTTTGGAATAGCGACCTTCTTGCTATGCGCCGG
TTTCGGTGCTGTGATAGTACTGGTTGTTCACCTCTTCCTACTGGAACCAT
CTGTTGGTCCGAATGCGCTCATTATTTTGTACTCGATTGTGATAATTGCC
GCGCTGCTTTCCGGGCTCTTCTCGGTGAGTTACCCGGAGCCAGCGATCAT
CCTCGGCACTTCGTTTGATGGTGCCGCTTTAGCCGTCTTTTCGTTGGCGC
GATTTCTTGGACACCGTCCAAAGTTGCTTGCGGAAGTCCCCGAAGGCTCC
CAAATACCAGTCATGTGGGCAATTGGATACGCGACAGCGACGTTGCTCCT
TGGCATATTTGGCGCCATGAATCAATGGCAAGTTGCTTTAGCTGACCGAA
TAGTCGCTGCCGCAGCTCAAAAAGCAAATCCCTCAAACGTTGGAGAGAGC
AAAGATAATGATACAATCGGGTACAGCGTGCAAGGGGATCAAAACCAATT
ATTACTGCCTTCCGAACCTCCTCGTACACCCACATACGAAAGAGAGCCTT
TACATAGTCCTATTGGTACGAGCACGTATGGGGCTATAGAGCAAGAAGAT
CAGTACACTGTGCTCCATAATATCGGTGCCGGGCCGCTTCCCGACAACCT
TGAGATGCTCAAAAACGCAAAGGACACGAAGATGTCACACACACCTCTAT
GA
back to top

Coding sequence (CDS) from alignment at tig00000074_pilon:225557..226558-

>Ggra6475.t1 ID=Ggra6475.t1|Name=Ggra6475.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1002bp|location=Sequence derived from alignment at tig00000074_pilon:225557..226558- (Gracilaria gracilis GNS1m male)
ATGGCGGTAGTTGACTCCGTTTCAGACTCGGCTGATGCCATCTTTTCTAA
CTTCAACGAATACGTGGCATCTCATCAGGATGGGATCGTCGCCTTGCTTC
TCTTTGTTGGAGTGATTGTAACTTTTGCTGGTCGTGTTCTATTAACCCCA
ACCGTTTTCCTCTTGGGATTCATTCCGTCTTCCACAGCCATTACCGCCTT
CGCATTTGCTTTCATTGCAGATCGTAAACCCAGTCACCCACGAGTCCTTG
GTGGAGTTTCTATGGTCGCTGCCGTTGCCACTGGGACACTTATAGGCATC
ATAGTACTTCGGCTTCTCTTTGGAATAGCGACCTTCTTGCTATGCGCCGG
TTTCGGTGCTGTGATAGTACTGGTTGTTCACCTCTTCCTACTGGAACCAT
CTGTTGGTCCGAATGCGCTCATTATTTTGTACTCGATTGTGATAATTGCC
GCGCTGCTTTCCGGGCTCTTCTCGGTGAGTTACCCGGAGCCAGCGATCAT
CCTCGGCACTTCGTTTGATGGTGCCGCTTTAGCCGTCTTTTCGTTGGCGC
GATTTCTTGGACACCGTCCAAAGTTGCTTGCGGAAGTCCCCGAAGGCTCC
CAAATACCAGTCATGTGGGCAATTGGATACGCGACAGCGACGTTGCTCCT
TGGCATATTTGGCGCCATGAATCAATGGCAAGTTGCTTTAGCTGACCGAA
TAGTCGCTGCCGCAGCTCAAAAAGCAAATCCCTCAAACGTTGGAGAGAGC
AAAGATAATGATACAATCGGGTACAGCGTGCAAGGGGATCAAAACCAATT
ATTACTGCCTTCCGAACCTCCTCGTACACCCACATACGAAAGAGAGCCTT
TACATAGTCCTATTGGTACGAGCACGTATGGGGCTATAGAGCAAGAAGAT
CAGTACACTGTGCTCCATAATATCGGTGCCGGGCCGCTTCCCGACAACCT
TGAGATGCTCAAAAACGCAAAGGACACGAAGATGTCACACACACCTCTAT
GA
back to top