Ggra6272.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6272.t1
Unique NameGgra6272.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length108
Homology
BLAST of Ggra6272.t1 vs. uniprot
Match: A0A2V3IMC8 (PHD finger-like domain-containing protein 5B n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IMC8_9FLOR)

HSP 1 Score: 223 bits (569), Expect = 3.820e-74
Identity = 100/107 (93.46%), Postives = 106/107 (99.07%), Query Frame = 0
Query:    1 MSKHHPDLVMCRKQPGVITGKVCERCEGKCVICDSLVSQTTPARICDECNYGSFQGKCIVCGNQGVSDAYYCAECTILEKDRDGCPKIVNVGTAKIDLVYEKKKYKR 107
            MS+HHPDLVMCRKQPG++TG++CERCEGKCVICDSLVSQTTPARICDECNYGSFQGKCIVCGNQGV+DAYYC ECTILEKDRDGCPKIVNVGTAKIDLVYEKKKYKR
Sbjct:    1 MSRHHPDLVMCRKQPGIVTGRLCERCEGKCVICDSLVSQTTPARICDECNYGSFQGKCIVCGNQGVADAYYCIECTILEKDRDGCPKIVNVGTAKIDLVYEKKKYKR 107          
BLAST of Ggra6272.t1 vs. uniprot
Match: LOW QUALITY PROTEIN: PHD finger-like domain-containing protein 5A n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D32FA (LOW QUALITY PROTEIN: PHD finger-like domain-containing protein 5A n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D32FA)

HSP 1 Score: 192 bits (488), Expect = 8.980e-62
Identity = 82/105 (78.10%), Postives = 94/105 (89.52%), Query Frame = 0
Query:    1 MSKHHPDLVMCRKQPGVITGKVCERCEGKCVICDSLVSQTTPARICDECNYGSFQGKCIVCGNQGVSDAYYCAECTILEKDRDGCPKIVNVGTAKIDLVYEKKKY 105
            MSKHHPDL+MCRKQPG   G++CE+CEGKCV+CDSLV QTT ARIC+ECNYGSFQGKC+VCG +GV DAYYC ECT+LEKDRDGCPKI N+GT+K DL YE+KKY
Sbjct:    1 MSKHHPDLIMCRKQPGTTVGRLCEKCEGKCVMCDSLVRQTTLARICEECNYGSFQGKCVVCGGKGVGDAYYCYECTVLEKDRDGCPKITNLGTSKTDLFYERKKY 105          
BLAST of Ggra6272.t1 vs. uniprot
Match: M2XJS6 (PHD finger-like domain-containing protein 5A n=2 Tax=Rhodophyta TaxID=2763 RepID=M2XJS6_GALSU)

HSP 1 Score: 190 bits (483), Expect = 5.540e-61
Identity = 80/105 (76.19%), Postives = 93/105 (88.57%), Query Frame = 0
Query:    1 MSKHHPDLVMCRKQPGVITGKVCERCEGKCVICDSLVSQTTPARICDECNYGSFQGKCIVCGNQGVSDAYYCAECTILEKDRDGCPKIVNVGTAKIDLVYEKKKY 105
            M+KHHPDL+MCRKQPGV  G++CE+C+GKCVICDS V   TP RICDECNYGSFQG+C++CG  GVSDAYYC ECTILEKDRDGCPKI+N+G+AK DL YE+KKY
Sbjct:    1 MAKHHPDLIMCRKQPGVAVGRLCEKCDGKCVICDSYVRPCTPVRICDECNYGSFQGRCVICGGVGVSDAYYCRECTILEKDRDGCPKIINLGSAKADLFYERKKY 105          
BLAST of Ggra6272.t1 vs. uniprot
Match: A0A6P5ZGH4 (PHD finger-like domain-containing protein 5B n=1 Tax=Durio zibethinus TaxID=66656 RepID=A0A6P5ZGH4_DURZI)

HSP 1 Score: 187 bits (476), Expect = 6.470e-60
Identity = 78/105 (74.29%), Postives = 93/105 (88.57%), Query Frame = 0
Query:    1 MSKHHPDLVMCRKQPGVITGKVCERCEGKCVICDSLVSQTTPARICDECNYGSFQGKCIVCGNQGVSDAYYCAECTILEKDRDGCPKIVNVGTAKIDLVYEKKKY 105
            M+KHHPDL+MCRKQPG+  G++CE+C+GKCVICDSLV   T  R+CDECNYGSFQG+C++CG  G+SDAYYC ECT+LEKDRDGCPKIVNVG+AK DL YE+KKY
Sbjct:    1 MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSLVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTLLEKDRDGCPKIVNVGSAKTDLFYERKKY 105          
BLAST of Ggra6272.t1 vs. uniprot
Match: A0A7S3GD77 (Hypothetical protein n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3GD77_9EUKA)

HSP 1 Score: 185 bits (470), Expect = 5.320e-59
Identity = 77/105 (73.33%), Postives = 92/105 (87.62%), Query Frame = 0
Query:    1 MSKHHPDLVMCRKQPGVITGKVCERCEGKCVICDSLVSQTTPARICDECNYGSFQGKCIVCGNQGVSDAYYCAECTILEKDRDGCPKIVNVGTAKIDLVYEKKKY 105
            M+KHHPDL+MCRKQPG+  G++CE+C+GKCVICDS V  +T  RICDECNYGSFQG+C++CG  G+SDAYYC EC I+EKDRDGCPKIVN+GTAK DL YE+KKY
Sbjct:    1 MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPSTLVRICDECNYGSFQGRCVICGGPGISDAYYCKECCIMEKDRDGCPKIVNLGTAKTDLFYERKKY 105          
BLAST of Ggra6272.t1 vs. uniprot
Match: A0A061FAN6 (PHF5-like protein n=14 Tax=Eukaryota TaxID=2759 RepID=A0A061FAN6_THECC)

HSP 1 Score: 185 bits (469), Expect = 7.560e-59
Identity = 78/105 (74.29%), Postives = 92/105 (87.62%), Query Frame = 0
Query:    1 MSKHHPDLVMCRKQPGVITGKVCERCEGKCVICDSLVSQTTPARICDECNYGSFQGKCIVCGNQGVSDAYYCAECTILEKDRDGCPKIVNVGTAKIDLVYEKKKY 105
            M+KHHPDL+MCRKQPG+  G++CE+C+GKCVICDSLV   T  R+CDECNYGSFQG+C+VCG  G+SDAYYC ECT LEKDRDGCPKIVN+G+AK DL YE+KKY
Sbjct:    1 MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSLVRPCTLVRVCDECNYGSFQGRCVVCGGLGISDAYYCKECTQLEKDRDGCPKIVNLGSAKTDLFYERKKY 105          
BLAST of Ggra6272.t1 vs. uniprot
Match: A0A4P9XNP4 (PHD-finger 5A n=1 Tax=Thamnocephalis sphaerospora TaxID=78915 RepID=A0A4P9XNP4_9FUNG)

HSP 1 Score: 185 bits (469), Expect = 9.450e-59
Identity = 77/105 (73.33%), Postives = 93/105 (88.57%), Query Frame = 0
Query:    1 MSKHHPDLVMCRKQPGVITGKVCERCEGKCVICDSLVSQTTPARICDECNYGSFQGKCIVCGNQGVSDAYYCAECTILEKDRDGCPKIVNVGTAKIDLVYEKKKY 105
            M+KHHPDL+MCRKQPG+  G++CERC+GKCVICDS V   T  RICDECNYG+FQG+C++CG+ G+SDAYYC ECTILEKDRDGCPKIVN+GT++ DL YE+KKY
Sbjct:    1 MAKHHPDLIMCRKQPGIAIGRLCERCDGKCVICDSYVRPCTLVRICDECNYGTFQGRCVICGSVGISDAYYCKECTILEKDRDGCPKIVNLGTSQTDLFYERKKY 105          
BLAST of Ggra6272.t1 vs. uniprot
Match: A0A0G4IUT8 (Uncharacterized protein n=3 Tax=Eukaryota TaxID=2759 RepID=A0A0G4IUT8_PLABS)

HSP 1 Score: 184 bits (468), Expect = 1.070e-58
Identity = 76/105 (72.38%), Postives = 91/105 (86.67%), Query Frame = 0
Query:    1 MSKHHPDLVMCRKQPGVITGKVCERCEGKCVICDSLVSQTTPARICDECNYGSFQGKCIVCGNQGVSDAYYCAECTILEKDRDGCPKIVNVGTAKIDLVYEKKKY 105
            M+KHHPDL+MCRKQPG+  G++C +C+GKCVICDS V   T  RICDECNYGSFQG+C++CG QG+SDAYYC ECT+ EKDRDGCPKIVN+G+AK DL YE+KKY
Sbjct:    1 MAKHHPDLIMCRKQPGIAIGRLCSKCDGKCVICDSYVKPNTLVRICDECNYGSFQGRCVICGGQGISDAYYCTECTLQEKDRDGCPKIVNLGSAKTDLFYERKKY 105          
BLAST of Ggra6272.t1 vs. uniprot
Match: PHD finger-like domain-containing protein 5B isoform X1 n=1 Tax=Theobroma cacao TaxID=3641 RepID=UPI0008483B87 (PHD finger-like domain-containing protein 5B isoform X1 n=1 Tax=Theobroma cacao TaxID=3641 RepID=UPI0008483B87)

HSP 1 Score: 185 bits (469), Expect = 1.260e-58
Identity = 78/105 (74.29%), Postives = 92/105 (87.62%), Query Frame = 0
Query:    1 MSKHHPDLVMCRKQPGVITGKVCERCEGKCVICDSLVSQTTPARICDECNYGSFQGKCIVCGNQGVSDAYYCAECTILEKDRDGCPKIVNVGTAKIDLVYEKKKY 105
            M+KHHPDL+MCRKQPG+  G++CE+C+GKCVICDSLV   T  R+CDECNYGSFQG+C+VCG  G+SDAYYC ECT LEKDRDGCPKIVN+G+AK DL YE+KKY
Sbjct:    1 MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSLVRPCTLVRVCDECNYGSFQGRCVVCGGLGISDAYYCKECTQLEKDRDGCPKIVNLGSAKTDLFYERKKY 105          
BLAST of Ggra6272.t1 vs. uniprot
Match: A0A177BA20 (PHD finger-like domain-containing protein 5A n=1 Tax=Intoshia linei TaxID=1819745 RepID=A0A177BA20_9BILA)

HSP 1 Score: 184 bits (467), Expect = 1.530e-58
Identity = 77/105 (73.33%), Postives = 91/105 (86.67%), Query Frame = 0
Query:    1 MSKHHPDLVMCRKQPGVITGKVCERCEGKCVICDSLVSQTTPARICDECNYGSFQGKCIVCGNQGVSDAYYCAECTILEKDRDGCPKIVNVGTAKIDLVYEKKKY 105
            M+KHHPDL+ CRKQPGV  G++CE+C+GKCVICDS V  +T  RICDECNYGS+QGKC++CG  G+SDAYYC ECT+ EKDRDGCPKIVNVG+AK DL YE+KKY
Sbjct:    1 MAKHHPDLIFCRKQPGVAIGRLCEKCDGKCVICDSYVRPSTLVRICDECNYGSYQGKCVICGGSGISDAYYCHECTVTEKDRDGCPKIVNVGSAKTDLFYERKKY 105          
The following BLAST results are available for this feature:
BLAST of Ggra6272.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IMC83.820e-7493.46PHD finger-like domain-containing protein 5B n=1 T... [more]
LOW QUALITY PROTEIN: PHD finger-like domain-containing protein 5A n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D32FA8.980e-6278.10LOW QUALITY PROTEIN: PHD finger-like domain-contai... [more]
M2XJS65.540e-6176.19PHD finger-like domain-containing protein 5A n=2 T... [more]
A0A6P5ZGH46.470e-6074.29PHD finger-like domain-containing protein 5B n=1 T... [more]
A0A7S3GD775.320e-5973.33Hypothetical protein n=1 Tax=Palpitomonas bilix Ta... [more]
A0A061FAN67.560e-5974.29PHF5-like protein n=14 Tax=Eukaryota TaxID=2759 Re... [more]
A0A4P9XNP49.450e-5973.33PHD-finger 5A n=1 Tax=Thamnocephalis sphaerospora ... [more]
A0A0G4IUT81.070e-5872.38Uncharacterized protein n=3 Tax=Eukaryota TaxID=27... [more]
PHD finger-like domain-containing protein 5B isoform X1 n=1 Tax=Theobroma cacao TaxID=3641 RepID=UPI0008483B871.260e-5874.29PHD finger-like domain-containing protein 5B isofo... [more]
A0A177BA201.530e-5873.33PHD finger-like domain-containing protein 5A n=1 T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005345PHF5-likePFAMPF03660PHF5coord: 1..104
e-value: 4.6E-47
score: 158.5
IPR005345PHF5-likePIRSFPIRSF016468RDS3pcoord: 1..107
e-value: 2.7E-47
score: 157.4
IPR005345PHF5-likePANTHERPTHR13120PHD FINGER-LIKE DOMAIN-CONTAINING PROTEIN 5Acoord: 1..105
NoneNo IPR availablePANTHERPTHR13120:SF5BNAC03G71910D PROTEINcoord: 1..105

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000879_piloncontigtig00000879_pilon:381938..382370 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6272.t1Ggra6272.t1Gracilaria gracilis GNS1m malemRNAtig00000879_pilon 381938..382370 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6272.t1 ID=Ggra6272.t1|Name=Ggra6272.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=108bp
MSKHHPDLVMCRKQPGVITGKVCERCEGKCVICDSLVSQTTPARICDECN
YGSFQGKCIVCGNQGVSDAYYCAECTILEKDRDGCPKIVNVGTAKIDLVY
EKKKYKR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005345PHF5