Ggra6272.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6272.t1
Unique NameGgra6272.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length108
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000879_piloncontigtig00000879_pilon:381938..382370 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706882.1
Preferred namePHF5A
PFAMsPHF5
Max annot lvl2759|Eukaryota
KEGG koko:K12834
KEGG Pathwayko03040,map03040
KEGG ModuleM00352
GOsGO:0000245,GO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003700,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005686,GO:0005689,GO:0005737,GO:0006139,GO:0006355,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009410,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0016070,GO:0016071,GO:0016363,GO:0016604,GO:0016607,GO:0019219,GO:0019222,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032991,GO:0034399,GO:0034622,GO:0034641,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045292,GO:0045893,GO:0045935,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0071011,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097525,GO:0120114,GO:0140110,GO:1901360,GO:1901363,GO:1902494,GO:1902680,GO:1903506,GO:1903508,GO:1990904,GO:2000112,GO:2001141
Evalue9.68e-62
EggNOG OGsKOG1705@1|root,KOG1705@2759|Eukaryota
DescriptionmRNA splicing, via spliceosome
COG categoryJ
BRITEko00000,ko00001,ko00002,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6272Ggra6272Gracilaria gracilis GNS1m malegenetig00000879_pilon 381938..382370 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6272.t1Ggra6272.t1Gracilaria gracilis GNS1m malepolypeptidetig00000879_pilon 381938..382370 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6272.t1.start1Ggra6272.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000879_pilon 381938..381940 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6272.t1.CDS1Ggra6272.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000879_pilon 381938..382102 +
Ggra6272.t1.CDS2Ggra6272.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000879_pilon 382212..382370 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6272.t1.exon1Ggra6272.t1.exon1Gracilaria gracilis GNS1m maleexontig00000879_pilon 381938..382102 +
Ggra6272.t1.exon2Ggra6272.t1.exon2Gracilaria gracilis GNS1m maleexontig00000879_pilon 382212..382370 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6272.t1.intron1Ggra6272.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000879_pilon 382103..382211 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6272.t1.stop1Ggra6272.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000879_pilon 382368..382370 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6272.t1 ID=Ggra6272.t1|Name=Ggra6272.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=108bp
MSKHHPDLVMCRKQPGVITGKVCERCEGKCVICDSLVSQTTPARICDECN
YGSFQGKCIVCGNQGVSDAYYCAECTILEKDRDGCPKIVNVGTAKIDLVY
EKKKYKR*
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spliced messenger RNA

>Ggra6272.t1 ID=Ggra6272.t1|Name=Ggra6272.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=324bp|location=Sequence derived from alignment at tig00000879_pilon:381938..382370+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAAAACATCATCCAGATCTTGTGATGTGTCGCAAGCAACCAGGTGT
GATAACCGGCAAAGTTTGTGAACGATGTGAAGGAAAATGTGTGATATGTG
ATTCTCTCGTCTCCCAGACGACACCAGCACGTATTTGTGATGAATGTAAC
TACGGGTCATTTCAAGGGAAATGCATAGTCTGTGGGAATCAAGGCGTATC
TGACGCGTATTATTGTGCCGAATGTACAATTTTGGAGAAAGACAGAGATG
GATGTCCAAAGATTGTAAACGTTGGAACCGCAAAGATAGACTTGGTGTAC
GAGAAGAAGAAGTACAAGAGGTAA
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protein sequence of Ggra6272.t1

>Ggra6272.t1 ID=Ggra6272.t1|Name=Ggra6272.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=108bp
MSKHHPDLVMCRKQPGVITGKVCERCEGKCVICDSLVSQTTPARICDECN
YGSFQGKCIVCGNQGVSDAYYCAECTILEKDRDGCPKIVNVGTAKIDLVY
EKKKYKR*
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mRNA from alignment at tig00000879_pilon:381938..382370+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6272.t1 ID=Ggra6272.t1|Name=Ggra6272.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=433bp|location=Sequence derived from alignment at tig00000879_pilon:381938..382370+ (Gracilaria gracilis GNS1m male)
ATGTCAAAACATCATCCAGATCTTGTGATGTGTCGCAAGCAACCAGGTGT
GATAACCGGCAAAGTTTGTGAACGATGTGAAGGAAAATGTGTGATATGTG
ATTCTCTCGTCTCCCAGACGACACCAGCACGTATTTGTGATGAATGTAAC
TACGGGTCATTTCAAGTAAGTTATTCGTTGTGCAATTTGAGATCCGATTT
CCTTCGGTTTTCATCTTTAGTTCTATTTTGAAAGGCATACTAACGAGCTC
TCGTGCTTTTCTCGGGAATCGCAGGGGAAATGCATAGTCTGTGGGAATCA
AGGCGTATCTGACGCGTATTATTGTGCCGAATGTACAATTTTGGAGAAAG
ACAGAGATGGATGTCCAAAGATTGTAAACGTTGGAACCGCAAAGATAGAC
TTGGTGTACGAGAAGAAGAAGTACAAGAGGTAA
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Coding sequence (CDS) from alignment at tig00000879_pilon:381938..382370+

>Ggra6272.t1 ID=Ggra6272.t1|Name=Ggra6272.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=324bp|location=Sequence derived from alignment at tig00000879_pilon:381938..382370+ (Gracilaria gracilis GNS1m male)
ATGTCAAAACATCATCCAGATCTTGTGATGTGTCGCAAGCAACCAGGTGT
GATAACCGGCAAAGTTTGTGAACGATGTGAAGGAAAATGTGTGATATGTG
ATTCTCTCGTCTCCCAGACGACACCAGCACGTATTTGTGATGAATGTAAC
TACGGGTCATTTCAAGGGAAATGCATAGTCTGTGGGAATCAAGGCGTATC
TGACGCGTATTATTGTGCCGAATGTACAATTTTGGAGAAAGACAGAGATG
GATGTCCAAAGATTGTAAACGTTGGAACCGCAAAGATAGACTTGGTGTAC
GAGAAGAAGAAGTACAAGAGGTAA
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