Ggra6025.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6025.t1
Unique NameGgra6025.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length97
Homology
BLAST of Ggra6025.t1 vs. uniprot
Match: A0A2V3IHH5 (1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamideisomerase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IHH5_9FLOR)

HSP 1 Score: 106 bits (264), Expect = 3.560e-26
Identity = 50/62 (80.65%), Postives = 58/62 (93.55%), Query Frame = 0
Query:    3 GIDVKLIRSLAAWATVPVTYAGGVRTLIDLELAKSEGRSLVDVTIGSALDIFGGQVKYKDAL 64
            GID++L+R L++WATVPVTYAGGVRTL DLELAKSEGR LVDVTIGSALDIFGGQ+KY +A+
Sbjct:  187 GIDLELVRKLSSWATVPVTYAGGVRTLHDLELAKSEGRGLVDVTIGSALDIFGGQLKYDEAV 248          
BLAST of Ggra6025.t1 vs. uniprot
Match: D8SNH5 (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic (Fragment) n=4 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8SNH5_SELML)

HSP 1 Score: 85.1 bits (209), Expect = 5.040e-18
Identity = 38/62 (61.29%), Postives = 48/62 (77.42%), Query Frame = 0
Query:    3 GIDVKLIRSLAAWATVPVTYAGGVRTLIDLELAKSEGRSLVDVTIGSALDIFGGQVKYKDAL 64
            GID +L++ L  W+ +PVTYAGGV +L DL+L K+ GR +VDVT+GSALDIFGG V Y D L
Sbjct:  192 GIDEELVKILGQWSPIPVTYAGGVTSLEDLDLIKNAGRGVVDVTVGSALDIFGGNVSYSDVL 253          
BLAST of Ggra6025.t1 vs. uniprot
Match: Q015Z9 (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=Q015Z9_OSTTA)

HSP 1 Score: 84.0 bits (206), Expect = 1.780e-17
Identity = 37/62 (59.68%), Postives = 48/62 (77.42%), Query Frame = 0
Query:    3 GIDVKLIRSLAAWATVPVTYAGGVRTLIDLELAKSEGRSLVDVTIGSALDIFGGQVKYKDAL 64
            GID+KL+  L A+  +PVTYAGG R+L DLEL K+ GR +VD+T+GSALD FGG +KY D +
Sbjct:  203 GIDLKLVELLGAFCPIPVTYAGGARSLEDLELVKASGRGVVDITVGSALDCFGGALKYDDVV 264          
BLAST of Ggra6025.t1 vs. uniprot
Match: D8UDZ0 (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8UDZ0_VOLCA)

HSP 1 Score: 83.2 bits (204), Expect = 4.830e-17
Identity = 37/74 (50.00%), Postives = 52/74 (70.27%), Query Frame = 0
Query:    3 GIDVKLIRSLAAWATVPVTYAGGVRTLIDLELAKSEGRSLVDVTIGSALDIFGGQVKYKDALPRKETSRKRKTH 76
            GID +L+  L  W+ +PVTYAGG RTL DLE  +  GR  VD+T+GSALDIFGG++KY D +   +  ++++ H
Sbjct:  227 GIDEQLVALLGEWSPLPVTYAGGARTLEDLERVRVAGRGRVDITVGSALDIFGGKLKYNDVVAWHKRQQEQQDH 300          
BLAST of Ggra6025.t1 vs. uniprot
Match: A0A5C4T448 (5-proFAR isomerase n=1 Tax=Paenibacillus hemerocallicola TaxID=1172614 RepID=A0A5C4T448_9BACL)

HSP 1 Score: 81.6 bits (200), Expect = 8.970e-17
Identity = 36/65 (55.38%), Postives = 45/65 (69.23%), Query Frame = 0
Query:    3 GIDVKLIRSLAAWATVPVTYAGGVRTLIDLELAKSEGRSLVDVTIGSALDIFGGQVKYKDALPRK 67
            GI+ KL+  L AW T+P TYAGGV  L DL+L    GR  +D+TIGSALDIFGG + Y+D +  K
Sbjct:  186 GIETKLVEKLGAWVTIPTTYAGGVSRLSDLQLVNELGRGKIDLTIGSALDIFGGSIAYEDVVKWK 250          
BLAST of Ggra6025.t1 vs. uniprot
Match: A0A388JUI6 (Uncharacterized protein n=2 Tax=Chara braunii TaxID=69332 RepID=A0A388JUI6_CHABU)

HSP 1 Score: 83.6 bits (205), Expect = 1.030e-16
Identity = 37/62 (59.68%), Postives = 45/62 (72.58%), Query Frame = 0
Query:    3 GIDVKLIRSLAAWATVPVTYAGGVRTLIDLELAKSEGRSLVDVTIGSALDIFGGQVKYKDAL 64
            GID +L+R L  W+ +PVTYAGG RTL DLE  K  G   VD+T+GSALDIFGGQ+ Y D +
Sbjct:  252 GIDEELVRQLGLWSPIPVTYAGGARTLSDLERVKEAGDGTVDITVGSALDIFGGQLPYTDVV 313          
BLAST of Ggra6025.t1 vs. uniprot
Match: A4RZJ6 (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4RZJ6_OSTLU)

HSP 1 Score: 82.0 bits (201), Expect = 1.040e-16
Identity = 36/62 (58.06%), Postives = 47/62 (75.81%), Query Frame = 0
Query:    3 GIDVKLIRSLAAWATVPVTYAGGVRTLIDLELAKSEGRSLVDVTIGSALDIFGGQVKYKDAL 64
            GID+KL+  L  +  +PVTYAGG R+L DLEL K+ GR +VD+T+GSALD FGG +KY D +
Sbjct:  213 GIDLKLVELLGEFCPIPVTYAGGARSLDDLELVKAAGRGMVDITVGSALDCFGGALKYDDVV 274          
BLAST of Ggra6025.t1 vs. uniprot
Match: A0A1D6M3Q5 (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase chloroplastic n=1 Tax=Zea mays TaxID=4577 RepID=A0A1D6M3Q5_MAIZE)

HSP 1 Score: 78.6 bits (192), Expect = 1.490e-16
Identity = 37/62 (59.68%), Postives = 46/62 (74.19%), Query Frame = 0
Query:    3 GIDVKLIRSLAAWATVPVTYAGGVRTLIDLELAKSEGRSLVDVTIGSALDIFGGQVKYKDAL 64
            GID +L+  L  ++ +PVTYAGGV T+ DLE  K  G+S VDVTIGSALDIFGG + YKD +
Sbjct:   67 GIDEELVELLGHYSPIPVTYAGGVSTMDDLERIKKAGKSRVDVTIGSALDIFGGDLPYKDVV 128          
BLAST of Ggra6025.t1 vs. uniprot
Match: A0A8J4CM99 (Uncharacterized protein n=2 Tax=Volvox TaxID=3066 RepID=A0A8J4CM99_9CHLO)

HSP 1 Score: 81.6 bits (200), Expect = 1.800e-16
Identity = 37/73 (50.68%), Postives = 52/73 (71.23%), Query Frame = 0
Query:    3 GIDVKLIRSLAAWATVPVTYAGGVRTLIDLELAKSEGRSLVDVTIGSALDIFGGQVKYKDALPRKETSRKRKT 75
            GID +L+  L AW+ +PVTYAGG RTL DLE  +  GR  VD+T+GSALDIFGG++ Y+D +   +  + R++
Sbjct:  227 GIDEQLVALLGAWSPLPVTYAGGARTLEDLERVRVAGRGRVDITVGSALDIFGGKLAYEDVVAWHKRQQHRQS 299          
BLAST of Ggra6025.t1 vs. uniprot
Match: A0A0E0L2A8 (Uncharacterized protein n=2 Tax=Oryza TaxID=4527 RepID=A0A0E0L2A8_ORYPU)

HSP 1 Score: 81.3 bits (199), Expect = 2.150e-16
Identity = 41/75 (54.67%), Postives = 51/75 (68.00%), Query Frame = 0
Query:    3 GIDVKLIRSLAAWATVPVTYAGGVRTLIDLELAKSEGRSLVDVTIGSALDIFGGQVKYKDA-LPRKETSRKRKTH 76
            GID +L+  L  ++ +PVTYAGGV T+ DLE  K  G+S VDVT+GSALDIFGG + YKD  L  KE    R+ H
Sbjct:  196 GIDEELVELLGRYSPIPVTYAGGVSTMDDLERIKRAGKSRVDVTVGSALDIFGGDLPYKDVVLWHKEQDMTRQVH 270          
The following BLAST results are available for this feature:
BLAST of Ggra6025.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IHH53.560e-2680.651-(5-phosphoribosyl)-5-((5-phosphoribosylamino)met... [more]
D8SNH55.040e-1861.291-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met... [more]
Q015Z91.780e-1759.681-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met... [more]
D8UDZ04.830e-1750.001-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met... [more]
A0A5C4T4488.970e-1755.385-proFAR isomerase n=1 Tax=Paenibacillus hemerocal... [more]
A0A388JUI61.030e-1659.68Uncharacterized protein n=2 Tax=Chara braunii TaxI... [more]
A4RZJ61.040e-1658.061-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met... [more]
A0A1D6M3Q51.490e-1659.681-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met... [more]
A0A8J4CM991.800e-1650.68Uncharacterized protein n=2 Tax=Volvox TaxID=3066 ... [more]
A0A0E0L2A82.150e-1654.67Uncharacterized protein n=2 Tax=Oryza TaxID=4527 R... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006062Histidine biosynthesis proteinPFAMPF00977His_biosynthcoord: 1..51
e-value: 3.0E-7
score: 30.2
IPR013785Aldolase-type TIM barrelGENE3D3.20.20.70Aldolase class Icoord: 1..71
e-value: 3.2E-18
score: 67.9
IPR044524Histidine biosynthesis, HisA-likePANTHERPTHR430901-(5-PHOSPHORIBOSYL)-5-[(5-PHOSPHORIBOSYLAMINO)METHYLIDENEAMINO] IMIDAZOLE-4-CARBOXAMIDE ISOMERASEcoord: 2..64
IPR011060Ribulose-phosphate binding barrelSUPERFAMILY51366Ribulose-phoshate binding barrelcoord: 1..63

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000045_piloncontigtig00000045_pilon:162009..162390 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6025.t1Ggra6025.t1Gracilaria gracilis GNS1m malemRNAtig00000045_pilon 162009..162390 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6025.t1 ID=Ggra6025.t1|Name=Ggra6025.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=97bp
MSGIDVKLIRSLAAWATVPVTYAGGVRTLIDLELAKSEGRSLVDVTIGSA
LDIFGGQVKYKDALPRKETSRKRKTHNVIMNRNVRIDLNVSWLSND*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006062His_biosynth
IPR013785Aldolase_TIM
IPR044524Isoase_HisA-like
IPR011060RibuloseP-bd_barrel