Ggra6025.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6025.t1
Unique NameGgra6025.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length97
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000045_piloncontigtig00000045_pilon:162009..162390 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog88036.EFJ14169
PFAMsHis_biosynth
Max annot lvl35493|Streptophyta
KEGG rclassRC00945
KEGG koko:K01814
KEGG ReactionR04640
KEGG Pathwayko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230
KEGG ModuleM00026
GOsGO:0000105,GO:0000162,GO:0003674,GO:0003824,GO:0003949,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006547,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0016053,GO:0016853,GO:0016860,GO:0016861,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
Evalue1.72e-18
EggNOG OGsCOG0106@1|root,KOG3055@2759|Eukaryota,37JVT@33090|Viridiplantae,3GCV3@35493|Streptophyta
EC5.3.1.16
DescriptionPhosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6025Ggra6025Gracilaria gracilis GNS1m malegenetig00000045_pilon 162009..163062 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6025.t1Ggra6025.t1Gracilaria gracilis GNS1m malepolypeptidetig00000045_pilon 162009..162390 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6025.t1.stop1Ggra6025.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000045_pilon 162009..162011 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6025.t1.CDS1Ggra6025.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000045_pilon 162009..162110 -
Ggra6025.t1.CDS2Ggra6025.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000045_pilon 162202..162390 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6025.t1.exon1Ggra6025.t1.exon1Gracilaria gracilis GNS1m maleexontig00000045_pilon 162009..162110 -
Ggra6025.t1.exon2Ggra6025.t1.exon2Gracilaria gracilis GNS1m maleexontig00000045_pilon 162202..162390 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6025.t1.intron1Ggra6025.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000045_pilon 162111..162201 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6025.t1.start1Ggra6025.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000045_pilon 162388..162390 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6025.t1 ID=Ggra6025.t1|Name=Ggra6025.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=97bp
MSGIDVKLIRSLAAWATVPVTYAGGVRTLIDLELAKSEGRSLVDVTIGSA
LDIFGGQVKYKDALPRKETSRKRKTHNVIMNRNVRIDLNVSWLSND*
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spliced messenger RNA

>Ggra6025.t1 ID=Ggra6025.t1|Name=Ggra6025.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=291bp|location=Sequence derived from alignment at tig00000045_pilon:162009..162390- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGGCATTGATGTGAAACTGATCCGCTCGCTTGCGGCGTGGGCAAC
TGTACCGGTTACCTATGCCGGTGGAGTTCGAACATTGATCGATTTGGAAC
TGGCCAAATCAGAAGGCCGAAGTCTTGTGGATGTCACAATTGGGTCTGCG
CTAGACATCTTCGGTGGTCAAGTGAAATACAAGGATGCGTTGCCCCGAAA
AGAAACCTCGAGAAAGAGAAAGACGCACAACGTTATAATGAACAGGAATG
TGCGGATTGATCTCAATGTGTCTTGGCTCAGCAATGACTAA
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protein sequence of Ggra6025.t1

>Ggra6025.t1 ID=Ggra6025.t1|Name=Ggra6025.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=97bp
MSGIDVKLIRSLAAWATVPVTYAGGVRTLIDLELAKSEGRSLVDVTIGSA
LDIFGGQVKYKDALPRKETSRKRKTHNVIMNRNVRIDLNVSWLSND*
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mRNA from alignment at tig00000045_pilon:162009..162390-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6025.t1 ID=Ggra6025.t1|Name=Ggra6025.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=382bp|location=Sequence derived from alignment at tig00000045_pilon:162009..162390- (Gracilaria gracilis GNS1m male)
ATGTCCGGCATTGATGTGAAACTGATCCGCTCGCTTGCGGCGTGGGCAAC
TGTACCGGTTACCTATGCCGGTGGAGTTCGAACATTGATCGATTTGGAAC
TGGCCAAATCAGAAGGCCGAAGTCTTGTGGATGTCACAATTGGGTCTGCG
CTAGACATCTTCGGTGGTCAAGTGAAATACAAGGATGCGGTGCGATGGCA
GCGCGAGCAGGAGACAACATGTGTCTGAAGAACATACTATTTACGTACAT
GACTCTATTGCTGTGGAAACCATGCGGCAGTTGCCCCGAAAAGAAACCTC
GAGAAAGAGAAAGACGCACAACGTTATAATGAACAGGAATGTGCGGATTG
ATCTCAATGTGTCTTGGCTCAGCAATGACTAA
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Coding sequence (CDS) from alignment at tig00000045_pilon:162009..162390-

>Ggra6025.t1 ID=Ggra6025.t1|Name=Ggra6025.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=291bp|location=Sequence derived from alignment at tig00000045_pilon:162009..162390- (Gracilaria gracilis GNS1m male)
ATGTCCGGCATTGATGTGAAACTGATCCGCTCGCTTGCGGCGTGGGCAAC
TGTACCGGTTACCTATGCCGGTGGAGTTCGAACATTGATCGATTTGGAAC
TGGCCAAATCAGAAGGCCGAAGTCTTGTGGATGTCACAATTGGGTCTGCG
CTAGACATCTTCGGTGGTCAAGTGAAATACAAGGATGCGTTGCCCCGAAA
AGAAACCTCGAGAAAGAGAAAGACGCACAACGTTATAATGAACAGGAATG
TGCGGATTGATCTCAATGTGTCTTGGCTCAGCAATGACTAA
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